HHsearch alignment for GI: 254780456 and conserved domain: PRK09202
>PRK09202 nusA transcription elongation factor NusA; Validated.
Probab=98.05 E-value=2e-06 Score=56.16 Aligned_cols=64 Identities=25% Similarity=0.458 Sum_probs=34.3
Q ss_pred CCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCC--EEEEEE
Q ss_conf 2233024678875314717774483157886420244444331133269725899998747652--799852
Q gi|254780456|r 196 EEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETH--RISLGM 265 (576)
Q Consensus 196 ~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~--~i~lsl 265 (576)
T Consensus 134 r~Geiv~G~V~r~~~~~i~Vdlg~~ea~Lp~~e~------ip~E~~~~Gdrik~~i~~V~~~~kg~qi~lSR 199 (428)
T PRK09202 134 RVGEIITGTVKRVERGNIIVDLGRAEAILPRDEQ------IPRENFRPGDRVRAYVYEVRKEARGPQIILSR 199 (428)
T ss_pred HCCCEEEEEEEEECCCCEEEEECCEEEECCHHHC------CCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEC
T ss_conf 3298899999997278389997882575647876------99866799987999872021258985799954