HHsearch alignment for GI: 254780456 and conserved domain: PRK09202

>PRK09202 nusA transcription elongation factor NusA; Validated.
Probab=98.05  E-value=2e-06  Score=56.16  Aligned_cols=64  Identities=25%  Similarity=0.458  Sum_probs=34.3

Q ss_pred             CCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCC--EEEEEE
Q ss_conf             2233024678875314717774483157886420244444331133269725899998747652--799852
Q gi|254780456|r  196 EEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETH--RISLGM  265 (576)
Q Consensus       196 ~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~--~i~lsl  265 (576)
T Consensus       134 r~Geiv~G~V~r~~~~~i~Vdlg~~ea~Lp~~e~------ip~E~~~~Gdrik~~i~~V~~~~kg~qi~lSR  199 (428)
T PRK09202        134 RVGEIITGTVKRVERGNIIVDLGRAEAILPRDEQ------IPRENFRPGDRVRAYVYEVRKEARGPQIILSR  199 (428)
T ss_pred             HCCCEEEEEEEEECCCCEEEEECCEEEECCHHHC------CCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEC
T ss_conf             3298899999997278389997882575647876------99866799987999872021258985799954