HHsearch alignment for GI: 254780456 and conserved domain: PRK11642

>PRK11642 exoribonuclease R; Provisional.
Probab=98.92  E-value=5e-09  Score=71.98  Aligned_cols=74  Identities=23%  Similarity=0.218  Sum_probs=63.3

Q ss_pred             CCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHH-HC----------CCHHHCCCCCEEEEEEEEECCCCC
Q ss_conf             0478987999999970890899961779849999974718212-10----------420110689879999999705768
Q gi|254780456|r  455 SLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDR-VD----------QDPGRFSKGQIVDACVVNVSKKDG  523 (576)
Q Consensus       455 ~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~-~~----------~~~~~~~vG~~v~~~Vi~id~~~~  523 (576)
T Consensus       640 ~~~iGe~f~G~IsgVt~fG~FVeL~~-~~vEGLVhvs~L~dD~Y~yd~~~~~LvG~rtg~~y~lGD~V~V~v~~Vd~~~~  718 (813)
T PRK11642        640 LDQVGNVFKGVIASVTGFGFFVRLDD-LFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDER  718 (813)
T ss_pred             HHHCCCEEEEEEEEEEEEEEEEEECC-CCEEEEEECCCCCCCEEEECCCCCEEEEEECCCEEECCCEEEEEEEEECHHHC
T ss_conf             97449978899960761008999548-86378888012888318983357889865079788269979999999742137


Q ss_pred             EEEEEE
Q ss_conf             699870
Q gi|254780456|r  524 KVSLSI  529 (576)
Q Consensus       524 ri~LS~  529 (576)
T Consensus       719 qIDfeL  724 (813)
T PRK11642        719 KIDFSL  724 (813)
T ss_pred             EEEEEE
T ss_conf             355898