HHsearch alignment for GI: 254780456 and conserved domain: PRK11642
>PRK11642 exoribonuclease R; Provisional.
Probab=98.92 E-value=5e-09 Score=71.98 Aligned_cols=74 Identities=23% Similarity=0.218 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHH-HC----------CCHHHCCCCCEEEEEEEEECCCCC
Q ss_conf 0478987999999970890899961779849999974718212-10----------420110689879999999705768
Q gi|254780456|r 455 SLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDR-VD----------QDPGRFSKGQIVDACVVNVSKKDG 523 (576)
Q Consensus 455 ~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~-~~----------~~~~~~~vG~~v~~~Vi~id~~~~ 523 (576)
T Consensus 640 ~~~iGe~f~G~IsgVt~fG~FVeL~~-~~vEGLVhvs~L~dD~Y~yd~~~~~LvG~rtg~~y~lGD~V~V~v~~Vd~~~~ 718 (813)
T PRK11642 640 LDQVGNVFKGVIASVTGFGFFVRLDD-LFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDER 718 (813)
T ss_pred HHHCCCEEEEEEEEEEEEEEEEEECC-CCEEEEEECCCCCCCEEEECCCCCEEEEEECCCEEECCCEEEEEEEEECHHHC
T ss_conf 97449978899960761008999548-86378888012888318983357889865079788269979999999742137
Q ss_pred EEEEEE
Q ss_conf 699870
Q gi|254780456|r 524 KVSLSI 529 (576)
Q Consensus 524 ri~LS~ 529 (576)
T Consensus 719 qIDfeL 724 (813)
T PRK11642 719 KIDFSL 724 (813)
T ss_pred EEEEEE
T ss_conf 355898