HHsearch alignment for GI: 254780456 and conserved domain: PRK11824
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional.
Probab=99.58 E-value=9.4e-15 Score=106.69 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=73.1
Q ss_pred HHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHH
Q ss_conf 11004789879999999708908999617798499999747182121042011068987999999970576869987036
Q gi|254780456|r 452 SVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKA 531 (576)
Q Consensus 452 ~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~ 531 (576)
T Consensus 615 i~~~~evG~iy~g~V~~i~~fGafve~--~pg~~GLlHiSel~~~rv~~v~d~~~~Gd~i~Vk~~~id~-~Gri~Lsrk~ 691 (694)
T PRK11824 615 ITAEPEVGEIYEGKVVRIVDFGAFVEI--LPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-RGRIRLSRKA 691 (694)
T ss_pred HCCCCCCCCEEEEEEEEEEECEEEEEE--CCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEHHH
T ss_conf 457685897799999999844189996--7998068880024652346864511689889999998989-9986666477
Q ss_pred HH
Q ss_conf 55
Q gi|254780456|r 532 LE 533 (576)
Q Consensus 532 ~~ 533 (576)
T Consensus 692 ~l 693 (694)
T PRK11824 692 VL 693 (694)
T ss_pred HH
T ss_conf 51