HHsearch alignment for GI: 254780456 and conserved domain: PRK11824

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional.
Probab=99.58  E-value=9.4e-15  Score=106.69  Aligned_cols=79  Identities=20%  Similarity=0.355  Sum_probs=73.1

Q ss_pred             HHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHH
Q ss_conf             11004789879999999708908999617798499999747182121042011068987999999970576869987036
Q gi|254780456|r  452 SVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKA  531 (576)
Q Consensus       452 ~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~  531 (576)
T Consensus       615 i~~~~evG~iy~g~V~~i~~fGafve~--~pg~~GLlHiSel~~~rv~~v~d~~~~Gd~i~Vk~~~id~-~Gri~Lsrk~  691 (694)
T PRK11824        615 ITAEPEVGEIYEGKVVRIVDFGAFVEI--LPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-RGRIRLSRKA  691 (694)
T ss_pred             HCCCCCCCCEEEEEEEEEEECEEEEEE--CCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEHHH
T ss_conf             457685897799999999844189996--7998068880024652346864511689889999998989-9986666477


Q ss_pred             HH
Q ss_conf             55
Q gi|254780456|r  532 LE  533 (576)
Q Consensus       532 ~~  533 (576)
T Consensus       692 ~l  693 (694)
T PRK11824        692 VL  693 (694)
T ss_pred             HH
T ss_conf             51