HHsearch alignment for GI: 254780456 and conserved domain: PRK12269
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional.
Probab=100.00 E-value=0 Score=951.80 Aligned_cols=544 Identities=35% Similarity=0.597 Sum_probs=515.9
Q ss_pred CHHHHHHHH----HHHHHCCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 106889999----8854021463898779999999819989999479603678997505664355637898799999997
Q gi|254780456|r 6 PSREDFATL----LEESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMGKGQYTPIKVGDEVEVYVERT 81 (576)
Q Consensus 6 ~~~~~f~~l----l~~~~~~~~~~~G~iv~G~V~~i~~~~v~vdig~k~~G~i~~~e~~~~~~~~~~kvGd~i~v~V~~~ 81 (576)
T Consensus 297 ~~~~~~~~~~~~~l~~~~~~~~~~~G~vi~g~Vv~i~~d~V~vdvG~KsEg~ip~~eF~-----~~~~vGD~v~V~ie~~ 371 (863)
T PRK12269 297 NQEGKGTPLVPRQLQERYSFEAPEPGSVRMGTVVQVNAGTVFVDIGGKSEGRVPVEEFE-----APPKAGDGVRVYVERV 371 (863)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCEEEEECCCCCCCCCCHHHCC-----CCCCCCCEEEEEEEEE
T ss_conf 43124135568876665300379986258999999958979996477445532699927-----7889999999999997
Q ss_pred ECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEE--EEECCCEEEEEC-CCHHHHHCCCCCCCCCCCCCCCCCCEE
Q ss_conf 47998599968787555758999998528976999999--996795599974-402000001123454333455555302
Q gi|254780456|r 82 ENSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIF--NQVKGGMTVDLN-GEVAFLPRSQIDIRPVRDVTPLMHEPQ 158 (576)
Q Consensus 82 ~~~~g~i~lS~~k~~~~~~~~~i~~a~~~g~~v~g~V~--~~~k~G~~V~i~-gi~~FlP~s~~~~~~~~d~~~~vG~~i 158 (576)
T Consensus 372 e~~~~~--LSr~kA~r~~~w~~le~a~~~~~~v~G~i~~~~~vkgG~~Vdl~~gv~AFLPgSqvd~rpv~d~~~~~g~~~ 449 (863)
T PRK12269 372 TPYGPE--LSKTKADRLGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKVDAPESLIGLTS 449 (863)
T ss_pred CCCCCE--ECHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEECCCCCEEECCHHHCCCEECCCCHHHCCCCC
T ss_conf 088975--618999878999999999756990799997446104537998588967867665647113688632158874
Q ss_pred EECCCCCCCC-----CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCC
Q ss_conf 3111335432-----33112212111222221211100011222330246788753147177744831578864202444
Q gi|254780456|r 159 LFEILKMDKR-----RGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHR 233 (576)
Q Consensus 159 ~~~Ii~~d~~-----~~~ivvS~k~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~ 233 (576)
T Consensus 450 ~f~iik~~~~~~~r~~~NiVvSRravlEe~~~~~r~~~l~~l~eG~vv~G~VKnitdyGaFvDLGGvDGLLHitDiSW~R 529 (863)
T PRK12269 450 KFYIERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDLGGFDGLLHVNDMSWGH 529 (863)
T ss_pred CEEEEEEEHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf 15999953133126778889976798888889999999864436877889998315640589617710146621113578
Q ss_pred CCCCCEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECC
Q ss_conf 44331133269725899998747652799852155543210000000489665899998159669998514200000011
Q gi|254780456|r 234 ILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHIS 313 (576)
Q Consensus 234 ~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~s 313 (576)
T Consensus 530 v~hPse~~~vG~~i~vkVlk~D~e~~riSLglKQl~~dPW~~i~~ky~vg~~v~gkVtnitdyGaFVEle~GiEGLvHvS 609 (863)
T PRK12269 530 VARPREFVKKGQTIELKVIRLDQAEKRINLSLKHFQPDPWLEFENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHIS 609 (863)
T ss_pred CCCHHHHHCCCCEEEEEEEEECCCCCEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEH
T ss_conf 89989971279779999985256545143113217789767888638899989999999744656999638925788702
Q ss_pred CCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCC
Q ss_conf 11011135574210037845799999862155047875203454321000001222221369999985016999706884
Q gi|254780456|r 314 QISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHL 393 (576)
Q Consensus 314 els~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i 393 (576)
T Consensus 610 EmsWtkk~~~P~k~v~~GdeVev~VLeID~ekrRISLg~Kq~~~NPW~~~~~ky~vG~~v~g~I~nitdFGiFv~le~gI 689 (863)
T PRK12269 610 EFSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGI 689 (863)
T ss_pred HHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEECEEEEEECCCCC
T ss_conf 50202367997980768977999999880322678544101668849999976899898999999853308999747993
Q ss_pred EEEEEHHHHHCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCE
Q ss_conf 13540055300122001234211123422688521565455320113221011100001100478987999999970890
Q gi|254780456|r 394 DGMIHLSDLDWNRPGEKVIAEYAKGDIVKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGG 473 (576)
Q Consensus 394 ~g~i~~~dls~~~~~~~~~~~~k~G~~i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G 473 (576)
T Consensus 690 DGlvH~sDlSW~~~~~~~~~~~kkGd~ve~kVL~Id~ekeRIsLGiKQL~~DP~~~f~--~~~~~G~iVtg~V~~v~d~G 767 (863)
T PRK12269 690 DGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA--NAYGVGSTVEGEVSSVTDFG 767 (863)
T ss_pred EEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCHHHHH--HHCCCCCEEEEEEEEEECCC
T ss_conf 6789821067678772656625789879999999747657777401006578789998--63899898999999995694
Q ss_pred EEEEECCCCCEEEEEEHHHCCHHHHCCCHH---HCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCC--
Q ss_conf 899961779849999974718212104201---106898799999997057686998703655777799999840344--
Q gi|254780456|r 474 IEVSLIDHKGINSFIRRSDLSRDRVDQDPG---RFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGAVAQFGSSD-- 548 (576)
Q Consensus 474 ~~V~l~~~~gv~G~i~~s~is~~~~~~~~~---~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~~~~~~~~~~~~~~~-- 548 (576)
T Consensus 768 ~~V~l~--~gieg~I~~s~ls~~r~e~~~~~~~rFavGd~vdA~I~~iD~k~RkI~LSIK~le~~~ekEa~~kY~s~~sg 845 (863)
T PRK12269 768 IFVRVP--GGVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVRDYQRKVQRDELSRYMSAPRG 845 (863)
T ss_pred EEEEEC--CCEEEEEEHHHHHHHHHHCHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 799908--991699898981120331846664235899879999998846667799877897767789999986076666
Q ss_pred ---CCCCHHHHHHHH
Q ss_conf ---577799999999
Q gi|254780456|r 549 ---SGASLGDILGMA 560 (576)
Q Consensus 549 ---~~~tlg~~~~~~ 560 (576)
T Consensus 846 ~~~~t~~LG~llke~ 860 (863)
T PRK12269 846 EDEGSFTLGDLMRQT 860 (863)
T ss_pred CCCCCCCHHHHHHHH
T ss_conf 676777589998876