HHsearch alignment for GI: 254780456 and conserved domain: PRK12329

>PRK12329 nusA transcription elongation factor NusA; Provisional.
Probab=97.85  E-value=0.00022  Score=43.82  Aligned_cols=64  Identities=17%  Similarity=0.233  Sum_probs=36.8

Q ss_pred             CCCCEEEEEEEEEECCCCEEEEC-C-----CEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECC-C-C-CEEEEEE
Q ss_conf             22330246788753147177744-8-----3157886420244444331133269725899998747-6-5-2799852
Q gi|254780456|r  196 EEGQVIEGTVKNITDYGVFVDLS-G-----VDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQ-E-T-HRISLGM  265 (576)
Q Consensus       196 ~~G~~v~g~V~~i~~~g~~V~~~-g-----~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~-~-~-~~i~lsl  265 (576)
T Consensus       152 k~GeIVtG~V~Rve~~~viv~l~~~lG~~~~EAiLP~~Eq------IP~E~yr~Gdrira~i~~V~~~~~kGpqIiLSR  224 (457)
T PRK12329        152 LEDPVLTARVLRFERQSVIMAVSSGFGRPEVEAELPKREQ------LPNDNYRANATFKVFLKEVSEGPRRGPQLFVSR  224 (457)
T ss_pred             HCCCEEEEEEEEEECCCEEEEECCCCCCCCEEEEECHHHC------CCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEC
T ss_conf             5596799999998169779996477776423697278886------999878999989999999764678885699954