HHsearch alignment for GI: 254780456 and conserved domain: PRK12329
>PRK12329 nusA transcription elongation factor NusA; Provisional.
Probab=97.85 E-value=0.00022 Score=43.82 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=36.8
Q ss_pred CCCCEEEEEEEEEECCCCEEEEC-C-----CEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECC-C-C-CEEEEEE
Q ss_conf 22330246788753147177744-8-----3157886420244444331133269725899998747-6-5-2799852
Q gi|254780456|r 196 EEGQVIEGTVKNITDYGVFVDLS-G-----VDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQ-E-T-HRISLGM 265 (576)
Q Consensus 196 ~~G~~v~g~V~~i~~~g~~V~~~-g-----~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~-~-~-~~i~lsl 265 (576)
T Consensus 152 k~GeIVtG~V~Rve~~~viv~l~~~lG~~~~EAiLP~~Eq------IP~E~yr~Gdrira~i~~V~~~~~kGpqIiLSR 224 (457)
T PRK12329 152 LEDPVLTARVLRFERQSVIMAVSSGFGRPEVEAELPKREQ------LPNDNYRANATFKVFLKEVSEGPRRGPQLFVSR 224 (457)
T ss_pred HCCCEEEEEEEEEECCCEEEEECCCCCCCCEEEEECHHHC------CCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEC
T ss_conf 5596799999998169779996477776423697278886------999878999989999999764678885699954