HHsearch alignment for GI: 254780456 and conserved domain: PTZ00162
>PTZ00162 RNA polymerase II subunit 7; Provisional.
Probab=98.41 E-value=3e-06 Score=55.16 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=15.5
Q ss_pred CCCEEEEEEEEEECCCCEEEECCCEEEEEEEECC
Q ss_conf 2330246788753147177744831578864202
Q gi|254780456|r 197 EGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIA 230 (576)
Q Consensus 197 ~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls 230 (576)
T Consensus 81 ~~EVvdg~V~~v~~~G~fv~~GPl~~fv~~s~i~ 114 (170)
T PTZ00162 81 KDEVLDAIVTDVNKLGFFAQAGPLKIFVSRTAIP 114 (170)
T ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEEHHHCC
T ss_conf 7989999999996407999912808998989999