HHsearch alignment for GI: 254780456 and conserved domain: TIGR02063
>TIGR02063 RNase_R ribonuclease R; InterPro: IPR011805 This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in Escherichia coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Not included in this entry are shorter, divergent forms from the Chlamydiae and the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans , .; GO: 0003723 RNA binding, 0004518 nuclease activity.
Probab=99.26 E-value=2.2e-11 Score=86.29 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=63.6
Q ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHH-HHCC----------CHHHCCCCCEEEEEEEEECCCCCE
Q ss_conf 47898799999997089089996177984999997471821-2104----------201106898799999997057686
Q gi|254780456|r 456 LRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRD-RVDQ----------DPGRFSKGQIVDACVVNVSKKDGK 524 (576)
Q Consensus 456 ~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~-~~~~----------~~~~~~vG~~v~~~Vi~id~~~~r 524 (576)
T Consensus 670 ~~iG~~f~G~Is~VT~FG~FVeL~~-~~ieGLVhI~~L~dDYY~Fd~~~~~L~G~R~gk~frLGD~v~V~V~~ad~~~~~ 748 (755)
T TIGR02063 670 EKIGEEFEGVISGVTSFGLFVELEN-NTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDTGK 748 (755)
T ss_pred HCCCCEEEEEEEEEEEEEEEEEECC-CEEEEEEECCCCCCCCCEECCCCCEEEEECCCCEEECCCEEEEEEEEECCCCCE
T ss_conf 5079688779975662013897367-411102632789885630752207886432687372487489999996103366
Q ss_pred EEEEE
Q ss_conf 99870
Q gi|254780456|r 525 VSLSI 529 (576)
Q Consensus 525 i~LS~ 529 (576)
T Consensus 749 idF~L 753 (755)
T TIGR02063 749 IDFEL 753 (755)
T ss_pred EEEEE
T ss_conf 98997