HHsearch alignment for GI: 254780456 and conserved domain: cd00164
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=99.30 E-value=5.7e-12 Score=89.80 Aligned_cols=63 Identities=29% Similarity=0.470 Sum_probs=24.0
Q ss_pred EEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 99999970890899961779849999974718212104201106898799999997057686998
Q gi|254780456|r 463 SCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSL 527 (576)
Q Consensus 463 ~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~L 527 (576)
T Consensus 2 ~G~V~~i~~~G~fV~~~--~~~~gli~~s~~s~~~~~~~~~~~~~G~~V~~~Vi~vd~~~~~i~L 64 (65)
T cd00164 2 TGKVVSITKFGVFVELE--DGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISL 64 (65)
T ss_pred EEEEEEEECCEEEEEEC--CCEEEEEEHHHHCCCCCCCHHHEECCCCEEEEEEEEEECCCCEEEC
T ss_conf 89999997845999989--8717889888916765359510985999999999999899998976