HHsearch alignment for GI: 254780456 and conserved domain: cd00164
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=99.28 E-value=1.7e-11 Score=86.90 Aligned_cols=63 Identities=41% Similarity=0.812 Sum_probs=32.5
Q ss_pred EEEEEEEECCCCEEEEC-CCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEE
Q ss_conf 46788753147177744-8315788642024444433113326972589999874765279985
Q gi|254780456|r 202 EGTVKNITDYGVFVDLS-GVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLG 264 (576)
Q Consensus 202 ~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~ls 264 (576)
T Consensus 2 ~G~V~~i~~~G~fV~~~~~~~gli~~s~~s~~~~~~~~~~~~~G~~V~~~Vi~vd~~~~~i~LS 65 (65)
T cd00164 2 TGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred EEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCHHHEECCCCEEEEEEEEEECCCCEEECC
T ss_conf 8999999784599998987178898889167653595109859999999999998999989769