HHsearch alignment for GI: 254780456 and conserved domain: cd04465
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.55 E-value=3.8e-15 Score=109.04 Aligned_cols=67 Identities=48% Similarity=0.848 Sum_probs=62.8
Q ss_pred CCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCC
Q ss_conf 9769999999967955999744020000011234543334555553023111335432331122121
Q gi|254780456|r 111 GERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRR 177 (576)
Q Consensus 111 g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~~~Ii~~d~~~~~ivvS~k 177 (576)
T Consensus 1 g~~v~g~I~~~~kGG~~v~~~gv~~FiP~Sq~~~~~~~~~~~~vG~~i~~~Ii~~d~~~~~ivvSrk 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDIEGVRAFLPASQVDLRPVEDLDEYVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCCEEEEECCEEEEEECHHCCCCCCCCHHHHCCCEEEEEEEEEECCCCEEEEECC
T ss_conf 9999999999985719999999999988025255456896897899899999999278899999879