HHsearch alignment for GI: 254780456 and conserved domain: cd04473
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=99.24 E-value=4.2e-11 Score=84.57 Aligned_cols=65 Identities=26% Similarity=0.416 Sum_probs=38.9
Q ss_pred HCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf 1004789879999999708908999617798499999747182121042011068987999999970576869987
Q gi|254780456|r 453 VSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLS 528 (576)
Q Consensus 453 ~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS 528 (576)
T Consensus 11 ~~dlevG~~y~G~V~~v~~fGaFV~l~--~~~~GLiHiS~l~~~--------~~vGD~V~VkV~~I~-~~Gki~L~ 75 (77)
T cd04473 11 MEDLEVGKLYKGKVNGVAKYGVFVDLN--DHVRGLIHRSNLLRD--------YEVGDEVIVQVTDIP-ENGNIDLI 75 (77)
T ss_pred CCCCCCCCEEEEEEEEEEECCEEEECC--CCCEEEEEEHHCCCC--------CCCCCEEEEEEEEEC-CCCCEEEE
T ss_conf 303523999999998896628899926--998796893166687--------899999999999999-99979318