HHsearch alignment for GI: 254780456 and conserved domain: cd05684
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=99.67 E-value=1.3e-16 Score=118.04 Aligned_cols=73 Identities=40% Similarity=0.803 Sum_probs=47.8
Q ss_pred CCEEEEEEEEEECCCCEEEEC----CCEEEEEEEECCCC-CCCCCCEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 330246788753147177744----83157886420244-4443311332697258999987476527998521555432
Q gi|254780456|r 198 GQVIEGTVKNITDYGVFVDLS----GVDGLLHVTDIAWH-RILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKNP 272 (576)
Q Consensus 198 G~~v~g~V~~i~~~g~~V~~~----g~~g~i~~~~ls~~-~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~l~~dp 272 (576)
T Consensus 1 G~i~~G~V~~i~~fGaFV~l~~~~~~~~GLvHiSeis~~~~~~~~~~~~~~G~~V~vkVi~id~--~ki~LS~K~~~~~~ 78 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQN--GKISLSMKDVDQDT 78 (79)
T ss_pred CCEEEEEEEEEEEEEEEEEEECCCCCCEEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEEEEEC--CEEEEEEEECCCCC
T ss_conf 9999999989975339999967889806789956815755558988936799999999999869--98887226134679