HHsearch alignment for GI: 254780456 and conserved domain: cd05686
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.57 E-value=8.4e-15 Score=106.98 Aligned_cols=71 Identities=25% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 7898799999997089089996177984999997471821210420110689879999999705768699870
Q gi|254780456|r 457 RKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSI 529 (576)
Q Consensus 457 ~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~ 529 (576)
T Consensus 2 evg~i~~G~V~~i~~fGAFV~i~-g~~~~GLvHiSeis~~rv~~~~dvv~vGd~V~Vkvi~id-~~~ki~LSl 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIP-GCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGRE-MKDKMKLSL 72 (73)
T ss_pred CCCCEEEEEEEEEEECCEEEEEC-CCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEEEEEEEC-CCCCEEEEC
T ss_conf 78869999998997532399908-988435599560541202899995579999999999886-899889841