HHsearch alignment for GI: 254780456 and conserved domain: cd05694
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.65 E-value=2.6e-07 Score=61.62 Aligned_cols=68 Identities=25% Similarity=0.429 Sum_probs=38.0
Q ss_pred CCCCCEEEEEEEEEECCEEEEEECC-CEEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEHHH
Q ss_conf 3898779999999819989999479-6036789975056643556378987999999974799859996878
Q gi|254780456|r 24 LAENCVTKGIVVGLEKDTVVVDVGL-KFEGRIPRREFMGKGQYTPIKVGDEVEVYVERTENSFGEAVFSRDK 94 (576)
Q Consensus 24 ~~~G~iv~G~V~~i~~~~v~vdig~-k~~G~i~~~e~~~~~~~~~~kvGd~i~v~V~~~~~~~g~i~lS~~k 94 (576)
T Consensus 2 l~~g~~l~a~V~SvEDHGyild~Gi~~~~gFl~~k~~~~---~~~l~~G~v~~c~V~~v~~~g~vv~ls~~~ 70 (74)
T cd05694 2 LVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGN---FSKLKVGQLLLCVVEKVKDDGRVVSLSADP 70 (74)
T ss_pred CCCCCEEEEEEEEEECCEEEEECCCCCCEEEEEHHHCCC---CCCCCCCCEEEEEEEEEECCCEEEEEECCH
T ss_conf 667829999985671441899847777266730133475---563348878999999992896099996685