HHsearch alignment for GI: 254780456 and conserved domain: cd05697
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.71 E-value=6.5e-17 Score=119.76 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=53.9
Q ss_pred CCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 98799999997089089996177984999997471821210420110689879999999705768699870
Q gi|254780456|r 459 NDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSI 529 (576)
Q Consensus 459 G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~ 529 (576)
T Consensus 1 G~iv~G~V~~i~~fG~fV~l~--~~i~Glv~~s~lsd~~v~~p~~~fk~G~~Vk~rVl~vD~~~~ri~LSl 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLS--DHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEECCCEEEEEEC--CCEEEEEEHHHHCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEC
T ss_conf 999999999973842799957--990699878990865206988908999999999999948879988659