HHsearch alignment for GI: 254780456 and conserved domain: cd05698

>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.72  E-value=3.5e-17  Score=121.43  Aligned_cols=70  Identities=23%  Similarity=0.359  Sum_probs=58.3

Q ss_pred             CCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEH
Q ss_conf             987999999970890899961779849999974718212104201106898799999997057686998703
Q gi|254780456|r  459 NDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIK  530 (576)
Q Consensus       459 G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k  530 (576)
T Consensus         1 G~vv~G~V~~i~~~G~fV~~--~~~i~Glvp~seis~~~v~~p~~~f~~Gq~V~v~Vl~vd~~~~ri~LS~K   70 (70)
T cd05698           1 GLKTHGTIVKVKPNGCIVSF--YNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK   70 (70)
T ss_pred             CCEEEEEEEEEECCCEEEEE--CCCCEEEEEHHHHCCCCCCCHHHHCCCCCEEEEEEEEEECCCCEEEEECC
T ss_conf             99999999999817189994--89969998989928320289899377999999999998089999999719