HHsearch alignment for GI: 254780456 and conserved domain: cd05702
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.23 E-value=2.1e-11 Score=86.35 Aligned_cols=62 Identities=21% Similarity=0.457 Sum_probs=44.4
Q ss_pred CCEEEEEEEEECCCEEEEEECCCCEEEEECCCC--CCCCCCCCCCCEECCCCEEEEEEEEEECCC
Q ss_conf 966589999815966999851420000001111--011135574210037845799999862155
Q gi|254780456|r 283 GSKVSGVVTNLTDYGVFVELQSGIEGLAHISQI--SWTKKNIHPSKILSVGQQVEVVILEVNPAR 345 (576)
Q Consensus 283 G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sel--s~~~~~~~~~~~~~~G~~v~~~Vl~id~~~ 345 (576)
T Consensus 1 G~vv~g~V~sik~~~l~V~L~d~~~GrVhiSei~D~~-~~~k~P~~~~k~Gq~V~~rViG~~d~k 64 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEW-PDGKNPLSKFKIGQKIKARVIGGHDAK 64 (70)
T ss_pred CCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCC-CCCCCHHHHCCCCCEEEEEEEEEECCC
T ss_conf 9779999999946708999689957789845521355-555694685689999999999765462