HHsearch alignment for GI: 254780456 and conserved domain: cd05704

>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.06  E-value=7.6e-10  Score=76.96  Aligned_cols=71  Identities=31%  Similarity=0.454  Sum_probs=44.8

Q ss_pred             CCCCCEEEEEEEEEECC-EEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEH
Q ss_conf             47898799999997089-0899961779849999974718212104201106898799999997057686998703
Q gi|254780456|r  456 LRKNDVVSCEVISVSEG-GIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIK  530 (576)
Q Consensus       456 ~~~G~iv~g~V~~v~~~-G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k  530 (576)
T Consensus         1 L~~G~i~~G~V~kV~p~~Gl~Vqlp--~g~~G~V~itdl~D~y~~~Pl~~f~~~qiVrc~VLs--~~~g~~~LSlR   72 (72)
T cd05704           1 LEEGAVTLGMVTKVIPHSGLTVQLP--FGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILS--KKDGKYQLSLR   72 (72)
T ss_pred             CCCCCEEEEEEEEECCCCCEEEECC--CCCEEEEEEEEECCCCCCCCHHHCCCCCEEEEEEEE--CCCCEEEEEEC
T ss_conf             9887474039999728985699848--996668999971474544967765789789999995--36998998749