HHsearch alignment for GI: 254780456 and conserved domain: cd05706

>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.66  E-value=1.5e-16  Score=117.56  Aligned_cols=72  Identities=21%  Similarity=0.321  Sum_probs=41.3

Q ss_pred             CCCCCEEEEEEEEEECCCCEEEEC-CCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEEC
Q ss_conf             222330246788753147177744-831578864202444443311332697258999987476527998521
Q gi|254780456|r  195 LEEGQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMK  266 (576)
Q Consensus       195 l~~G~~v~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK  266 (576)
T Consensus         1 lkvG~~l~G~Vt~V~~~g~fV~L~~~~~Glvhisel~dd~~~~~~~~~~~g~~V~v~Vl~VD~~~krI~LSlr   73 (73)
T cd05706           1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR   73 (73)
T ss_pred             CCCCCEEEEEEEEECCCEEEEEECCCCEEEEEHHHHCCCCCCCCHHHCCCCCEEEEEEEEEECCCCEEEEECC
T ss_conf             9889899999999888879999089947999989930460138175168999999999999888998988619