HHsearch alignment for GI: 254780456 and conserved domain: smart00316
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=99.27 E-value=1.8e-11 Score=86.74 Aligned_cols=71 Identities=42% Similarity=0.705 Sum_probs=40.9
Q ss_pred CCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEEEE
Q ss_conf 896658999981596699985142000000111101113557421003784579999986215504787520
Q gi|254780456|r 282 EGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLK 353 (576)
Q Consensus 282 ~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~k 353 (576)
T Consensus 2 ~G~iv~g~V~~v~~~g~~v~i~~~~~g~l~~~~l~~~-~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~k 72 (72)
T smart00316 2 VGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDK-RVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCC-CCCCHHHEECCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf 9989999999997873999976998999980750555-5478468363898999999999999999999859