HHsearch alignment for GI: 254780456 and conserved domain: smart00316

>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=99.27  E-value=1.8e-11  Score=86.74  Aligned_cols=71  Identities=42%  Similarity=0.705  Sum_probs=40.9

Q ss_pred             CCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEEEE
Q ss_conf             896658999981596699985142000000111101113557421003784579999986215504787520
Q gi|254780456|r  282 EGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLK  353 (576)
Q Consensus       282 ~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~k  353 (576)
T Consensus         2 ~G~iv~g~V~~v~~~g~~v~i~~~~~g~l~~~~l~~~-~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~k   72 (72)
T smart00316        2 VGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDK-RVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK   72 (72)
T ss_pred             CCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCC-CCCCHHHEECCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf             9989999999997873999976998999980750555-5478468363898999999999999999999859