RPSBLAST alignment for GI: 254780456 and conserved domain: TIGR00448
>gnl|CDD|129540 TIGR00448, rpoE, DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE. Length = 179
Score = 39.4 bits (92), Expect = 0.003
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 191 IVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSK----------- 239
+V K E G+++EG V I ++G FV L DGL HV+ + + K
Sbjct: 75 LVFKPELGEIVEGEVIEIVEFGAFVSLGPFDGLFHVSQVTDDYCYYDPKESALIGKETKK 134
Query: 240 VLSIGQQVKVKIIRIN-----QETHRISLGMKQ 267
VL G +V+ +I+ ++ E +I L M+Q
Sbjct: 135 VLDEGDKVRARIVALSLKDRRPEGSKIGLTMRQ 167