RPSBLAST alignment for GI: 254780456 and conserved domain: TIGR00448

>gnl|CDD|129540 TIGR00448, rpoE, DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE. Length = 179
 Score = 39.4 bits (92), Expect = 0.003
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)

Query: 191 IVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSK----------- 239
           +V K E G+++EG V  I ++G FV L   DGL HV+ +      +  K           
Sbjct: 75  LVFKPELGEIVEGEVIEIVEFGAFVSLGPFDGLFHVSQVTDDYCYYDPKESALIGKETKK 134

Query: 240 VLSIGQQVKVKIIRIN-----QETHRISLGMKQ 267
           VL  G +V+ +I+ ++      E  +I L M+Q
Sbjct: 135 VLDEGDKVRARIVALSLKDRRPEGSKIGLTMRQ 167