RPSBLAST alignment for GI: 254780456 and conserved domain: TIGR00717
>gnl|CDD|162009 TIGR00717, rpsA, ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned. Length = 516
Score = 202 bits (515), Expect = 2e-52
Identities = 125/425 (29%), Positives = 222/425 (52%), Gaps = 23/425 (5%)
Query: 121 QVKGGMTVDLNGEVAFL-----PRSQIDIRPVRDVTPLMHEPQLFE--ILKMDKRRGNIV 173
+ G V +N + F+ +I D + E + +++ R G V
Sbjct: 20 SIVKGTVVAINKDTVFVDVGLKSEGRIPKEEFLDAPLEIQVGDEVEVYLDRVEDRFGETV 79
Query: 174 VSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHR 233
+SR + R E ++ + EEG ++EG + G VDL+GV+ L + +
Sbjct: 80 LSRE---KAQRHELWIKLEKAYEEGSIVEGKIVGKVKGGFIVDLNGVEAFLPGSQVDVKP 136
Query: 234 ILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQL----EKNPWDDVQDKYVEGSKVSGV 289
I + IG+ +K KII+++Q+ + I + + +++ + EG V GV
Sbjct: 137 IKDLDSL--IGKTLKFKIIKLDQKRNNIVVSRRAYLEEERSQAREELLENLKEGDVVKGV 194
Query: 290 VTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRIS 349
V N+TD+G FV+L G++GL HI+ +SW K+ HPS+ + VGQ+V+V +++ + + RIS
Sbjct: 195 VKNITDFGAFVDL-GGVDGLLHITDMSW-KRVKHPSEYVKVGQEVKVKVIKFDKEKGRIS 252
Query: 350 LGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGE 409
L LKQ +PWE K P G ++ G V N TD+G+F+ ++E ++G++H+S++ W +
Sbjct: 253 LSLKQLGEDPWEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNS 312
Query: 410 KVIAEYAKGDIVKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISV 469
KGD V+ ++LDID + R+SLG+KQ + + + D V+ ++ +
Sbjct: 313 HPSKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHP--VGDRVTGKIKKI 370
Query: 470 SEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGR-FSKGQIVDACVVNVSKKDGKVSLS 528
++ G V L GI+ I SD+S D+ ++ + KG ++A V+ V K+ ++SL
Sbjct: 371 TDFGAFVELEG--GIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLG 428
Query: 529 IKALE 533
+K L
Sbjct: 429 VKQLT 433