RPSBLAST alignment for GI: 254780456 and conserved domain: cd05691

>gnl|CDD|88446 cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.. Length = 73
 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 198 GQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQ 256
           G ++ G V  +   G  V L  GV+G L   +++  R+   ++   +G +V+ KI  +++
Sbjct: 1   GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDR 60

Query: 257 ETHRISLGMKQLE 269
           +  +ISL +K  E
Sbjct: 61  KNRKISLSIKAKE 73