RPSBLAST alignment for GI: 254780456 and conserved domain: cd05708

>gnl|CDD|88463 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.. Length = 77
 Score = 71.1 bits (174), Expect = 7e-13
 Identities = 31/73 (42%), Positives = 52/73 (71%), Gaps = 2/73 (2%)

Query: 196 EEGQVIEGTVKNITDYGVFVDLSGVD--GLLHVTDIAWHRILHPSKVLSIGQQVKVKIIR 253
           + GQ I+GTV+ + DYGVF+D+ G +  GL H ++I+ +R+   SK+  +G +V+ K+++
Sbjct: 1   KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLK 60

Query: 254 INQETHRISLGMK 266
           I+ E  RISLG+K
Sbjct: 61  IDAEKKRISLGLK 73