BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str. psy62] (576 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str. psy62] Length = 576 Score = 1155 bits (2989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/576 (100%), Positives = 576/576 (100%) Query: 1 MSFTNPSREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFM 60 MSFTNPSREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFM Sbjct: 1 MSFTNPSREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFM 60 Query: 61 GKGQYTPIKVGDEVEVYVERTENSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFN 120 GKGQYTPIKVGDEVEVYVERTENSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFN Sbjct: 61 GKGQYTPIKVGDEVEVYVERTENSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFN 120 Query: 121 QVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVL 180 QVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVL Sbjct: 121 QVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVL 180 Query: 181 EESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKV 240 EESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKV Sbjct: 181 EESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKV 240 Query: 241 LSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFV 300 LSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFV Sbjct: 241 LSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFV 300 Query: 301 ELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPW 360 ELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPW Sbjct: 301 ELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPW 360 Query: 361 EEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDI 420 EEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDI Sbjct: 361 EEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDI 420 Query: 421 VKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLID 480 VKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLID Sbjct: 421 VKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLID 480 Query: 481 HKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGA 540 HKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGA Sbjct: 481 HKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGA 540 Query: 541 VAQFGSSDSGASLGDILGMALKNRGNDAGDSNDNQG 576 VAQFGSSDSGASLGDILGMALKNRGNDAGDSNDNQG Sbjct: 541 VAQFGSSDSGASLGDILGMALKNRGNDAGDSNDNQG 576 >gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] Length = 699 Score = 44.7 bits (104), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 172 IVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGV-DGLLHVTDIA 230 I S A +E +R RS I E ++ +G V + D+G FV G DGL+H++ ++ Sbjct: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 Query: 231 WHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKN 271 R+ S V+ G V VK++ + + +I L MK +++N Sbjct: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 Score = 35.0 bits (79), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 288 GVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKR 347 G V + D+G FV +GL HISQ+S T++ S ++ G V V +L+ + R + Sbjct: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 Query: 348 ISLGLK 353 I L +K Sbjct: 683 IKLSMK 688 Score = 32.0 bits (71), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 374 EGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEK--VIAEYAKGDIVKAVVLDI-DV 430 +G+V DFG F+ DG++H+S L R + V+ E GD V +LD D Sbjct: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFDDR 680 Query: 431 GKERISLGV 439 GK ++S+ V Sbjct: 681 GKIKLSMKV 689 >gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] Length = 526 Score = 29.6 bits (65), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 18/126 (14%) Query: 140 SQIDIRPVRDVTP------LMHEPQLFEILKMDKRRGNIVVSRRAVLEESRAEQRSEIVQ 193 QI ++ RD P ++ +P + MD R + +++ ++++ R +R Sbjct: 77 CQISLKVARDRDPSIDIGGVVSDP----LPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 Query: 194 KLEE--GQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKI 251 + ++ G++I GTVK + V VDL DG++ + L P G +VK I Sbjct: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP------GDRVKSYI 186 Query: 252 IRINQE 257 + +E Sbjct: 187 YDVRRE 192 >gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 14/89 (15%) Query: 280 YVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQIS-WTKKNIHPSKILSV----GQQV 334 Y+E V + + D+ + L GI+GL+H I+ ++++ + SV Q+V Sbjct: 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKV 233 Query: 335 EVVILEVNPARKRISLGLKQALINPWEEF 363 +VV RI K L+N ++++ Sbjct: 234 DVV---------RIFESRKLFLVNAFKDY 253 >gi|254780885|ref|YP_003065298.1| hypothetical protein CLIBASIA_03910 [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 25.4 bits (54), Expect = 2.7, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 450 VDSVSSLRKNDVVSCEVISVSEGGIEVSL 478 VD+ L N SC+VI +SE G+ VS+ Sbjct: 130 VDAQLVLNDNTKHSCKVIDISESGVSVSV 158 >gi|254781039|ref|YP_003065452.1| putative glycerol-3-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 329 Score = 24.3 bits (51), Expect = 5.3, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 18/28 (64%) Query: 496 DRVDQDPGRFSKGQIVDACVVNVSKKDG 523 ++ + D + +G I +CV+N+SKK G Sbjct: 268 EKQNPDQIQLVEGAIAVSCVINISKKMG 295 >gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 24.3 bits (51), Expect = 5.7, Method: Compositional matrix adjust. Identities = 12/23 (52%), Positives = 14/23 (60%) Query: 114 IEGVIFNQVKGGMTVDLNGEVAF 136 I VIF + G T+ LNGEV F Sbjct: 116 ILMVIFRHLTGIRTIVLNGEVMF 138 >gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 23.9 bits (50), Expect = 6.6, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 16 EESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMG-KGQYTPIKVGDEV 74 EE T DL ++C T+ I L + ++ G++ +EFM +Y + + DEV Sbjct: 178 EEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEV 237 Query: 75 EVYVERTENSFG 86 RT F Sbjct: 238 MTGWGRTGKIFA 249 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.136 0.381 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 373,722 Number of Sequences: 1233 Number of extensions: 16705 Number of successful extensions: 65 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 12 length of query: 576 length of database: 328,796 effective HSP length: 79 effective length of query: 497 effective length of database: 231,389 effective search space: 115000333 effective search space used: 115000333 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 41 (20.4 bits)