HHsearch alignment for GI: 254780457 and conserved domain: PRK07261

>PRK07261 topology modulation protein; Provisional.
Probab=98.52  E-value=7.3e-07  Score=61.90  Aligned_cols=96  Identities=22%  Similarity=0.236  Sum_probs=62.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf             18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r    9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV   88 (217)
Q Consensus         9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~   88 (217)
T Consensus         1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w-------~p~w~~~------------------------------   43 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHF-------SSNWQER------------------------------   43 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEE-------CCCCEEC------------------------------
T ss_conf             989998899986899999999987979797022788-------8999888------------------------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH---HHHHCCCCEEEEEECCHHHH---HHHHHHH
Q ss_conf             111220578999988788887630388462064125---56630388689984488889---9998667
Q gi|254780457|r   89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIG---TIIFPDARIKFYVTASLDIR---ARRRYNE  151 (217)
Q Consensus        89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDig---TvVfPdA~~KifL~As~e~R---A~RR~~e  151 (217)
T Consensus        44 -----~~~----e~~~~~~~~~~~-~~WIiDGny~~~~~~~rl~~aD~iI~Ld~p~~~~l~rvikR~l~  102 (171)
T PRK07261         44 -----DDD----DMIADISNFLLK-QDWIIEGNYSNCLYEERMAEADQIIFLNFSRFNCLYRAFKRYLK  102 (171)
T ss_pred             -----CHH----HHHHHHHHHHHC-CCEEEECCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             -----899----999999999848-98799478512477767977999999858499999999999999