HHsearch alignment for GI: 254780457 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=98.52 E-value=7.3e-07 Score=61.90 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=62.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w-------~p~w~~~------------------------------ 43 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHF-------SSNWQER------------------------------ 43 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEE-------CCCCEEC------------------------------
T ss_conf 989998899986899999999987979797022788-------8999888------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH---HHHHCCCCEEEEEECCHHHH---HHHHHHH
Q ss_conf 111220578999988788887630388462064125---56630388689984488889---9998667
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIG---TIIFPDARIKFYVTASLDIR---ARRRYNE 151 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDig---TvVfPdA~~KifL~As~e~R---A~RR~~e 151 (217)
T Consensus 44 -----~~~----e~~~~~~~~~~~-~~WIiDGny~~~~~~~rl~~aD~iI~Ld~p~~~~l~rvikR~l~ 102 (171)
T PRK07261 44 -----DDD----DMIADISNFLLK-QDWIIEGNYSNCLYEERMAEADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred -----CHH----HHHHHHHHHHHC-CCEEEECCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf -----899----999999999848-98799478512477767977999999858499999999999999