HHsearch alignment for GI: 254780457 and conserved domain: TIGR00017

>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=100.00  E-value=0  Score=489.75  Aligned_cols=203  Identities=35%  Similarity=0.668  Sum_probs=192.0

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHH---HHCCCCHHHHHHHHHHHH-------------HC
Q ss_conf             88189866687789678999999981783562028999998523---210111014655333321-------------01
Q gi|254780457|r    7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNI---LDAGISLDDEKMAIKIAQ-------------NI   70 (217)
Q Consensus         7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~---~~~~~~~~~~~~~~~~~~-------------~i   70 (217)
T Consensus         1 ~~~~IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qrsL~~~~d~~~E~~L~~L~~~~di~f~~~~~~~~v   80 (223)
T TIGR00017         1 MKMIIAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQRSLQNRVDLTDEDALLELISQLDIRFIPTAGEVKV   80 (223)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCEEE
T ss_conf             98637623776465578999999862950214432899999999988740688568488999986326044215775068


Q ss_pred             CCCCCCCC-CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf             11244444-4320121001111220578999988788887630-388462064125566303886899844888899998
Q gi|254780457|r   71 VLSNLDKA-QLSSNAIANVASQVASIDSVRDALIDIQRSFAQN-KLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRR  148 (217)
Q Consensus        71 ~~~~~~~~-~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR  148 (217)
T Consensus        81 ~~nG~DV~~~I~t~~v~~~aS~~A~~~~vR~~~~~~Qq~~~~~sd~g~v~dGRDiGTvVfPnA~~KiFLdAsve~RA~RR  160 (223)
T TIGR00017        81 FLNGEDVSEAIRTQEVANLASKVAAFPKVREILLKRQQKLAKNSDDGIVADGRDIGTVVFPNAELKIFLDASVEERAKRR  160 (223)
T ss_pred             EECCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCCCCCEEECCCHHHHHHHH
T ss_conf             87077713220683589999987237779999999999987515897588455237446788751324317878998876


Q ss_pred             HHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             66776521-11356999999999856102367578537997399977898989999999999
Q gi|254780457|r  149 YNEMVSRG-EKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGL  209 (217)
Q Consensus       149 ~~el~~~g-~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~  209 (217)
T Consensus       161 ~~~~~~~g~~~~~~~~L~~eik~RD~~D~~R~~~PL~~A~DA~~ldt~~lsi~~V~~~~l~~  222 (223)
T TIGR00017       161 YKDLQIKGDNEVNLEELIAEIKRRDDVDSSREVAPLKKAKDALYLDTSNLSIDEVVEKILEK  222 (223)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             99988741501479999999975140133234355545565168854753488999999860