HHsearch alignment for GI: 254780457 and conserved domain: TIGR00017
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=100.00 E-value=0 Score=489.75 Aligned_cols=203 Identities=35% Similarity=0.668 Sum_probs=192.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHH---HHCCCCHHHHHHHHHHHH-------------HC
Q ss_conf 88189866687789678999999981783562028999998523---210111014655333321-------------01
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNI---LDAGISLDDEKMAIKIAQ-------------NI 70 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~---~~~~~~~~~~~~~~~~~~-------------~i 70 (217)
T Consensus 1 ~~~~IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qrsL~~~~d~~~E~~L~~L~~~~di~f~~~~~~~~v 80 (223)
T TIGR00017 1 MKMIIAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQRSLQNRVDLTDEDALLELISQLDIRFIPTAGEVKV 80 (223)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCEEE
T ss_conf 98637623776465578999999862950214432899999999988740688568488999986326044215775068
Q ss_pred CCCCCCCC-CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 11244444-4320121001111220578999988788887630-388462064125566303886899844888899998
Q gi|254780457|r 71 VLSNLDKA-QLSSNAIANVASQVASIDSVRDALIDIQRSFAQN-KLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRR 148 (217)
Q Consensus 71 ~~~~~~~~-~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR 148 (217)
T Consensus 81 ~~nG~DV~~~I~t~~v~~~aS~~A~~~~vR~~~~~~Qq~~~~~sd~g~v~dGRDiGTvVfPnA~~KiFLdAsve~RA~RR 160 (223)
T TIGR00017 81 FLNGEDVSEAIRTQEVANLASKVAAFPKVREILLKRQQKLAKNSDDGIVADGRDIGTVVFPNAELKIFLDASVEERAKRR 160 (223)
T ss_pred EECCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCCCCCEEECCCHHHHHHHH
T ss_conf 87077713220683589999987237779999999999987515897588455237446788751324317878998876
Q ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66776521-11356999999999856102367578537997399977898989999999999
Q gi|254780457|r 149 YNEMVSRG-EKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGL 209 (217)
Q Consensus 149 ~~el~~~g-~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~ 209 (217)
T Consensus 161 ~~~~~~~g~~~~~~~~L~~eik~RD~~D~~R~~~PL~~A~DA~~ldt~~lsi~~V~~~~l~~ 222 (223)
T TIGR00017 161 YKDLQIKGDNEVNLEELIAEIKRRDDVDSSREVAPLKKAKDALYLDTSNLSIDEVVEKILEK 222 (223)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 99988741501479999999975140133234355545565168854753488999999860