HHsearch alignment for GI: 254780457 and conserved domain: TIGR00041
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=97.16 E-value=0.0036 Score=39.88 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=80.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC-C---EEEC--------CHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHCCC
Q ss_conf 818986668778967899999998178-3---5620--------28999998523210111014---6553333210111
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGF-H---YLDT--------GLIYRAVAKNILDAGISLDD---EKMAIKIAQNIVL 72 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~-~---~ldt--------G~~YR~~a~~~~~~~~~~~~---~~~~~~~~~~i~~ 72 (217)
T Consensus 2 ~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR---- 77 (211)
T TIGR00041 2 GMFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVLFTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAADR---- 77 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----
T ss_conf 7458885115875899999999997751383478871899987899999999987414666335999999999858----
Q ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE------------CCCHHHHH-------HCC---
Q ss_conf 24444443201210011112205789999887888876303884620------------64125566-------303---
Q gi|254780457|r 73 SNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILD------------GRDIGTII-------FPD--- 130 (217)
Q Consensus 73 ~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E------------GRDigTvV-------fPd--- 130 (217)
T Consensus 78 -------------------~~HL~~~~~~ik~---al~-~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~ 134 (211)
T TIGR00041 78 -------------------HDHLEHVEEKIKP---ALA-QGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMK 134 (211)
T ss_pred -------------------HHHHHHHHHHHHH---HHH-CCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf -------------------9999978987788---986-69679984112435777542256888899999775211358
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-CCCC--C----CCEEEEECCCCCHHHHH
Q ss_conf 886899844888899998667765211135699999999985610236757-8537--9----97399977898989999
Q gi|254780457|r 131 ARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYC-PLVR--D----KDAYFFDTSEMDIGTMC 203 (217)
Q Consensus 131 A~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~s-PL~~--a----~DAi~IDTs~lsi~ev~ 203 (217)
T Consensus 135 Pd~t~~Ld~d~e~al~R~~~~----g-~~~~~~-~~~~e~~d~~~~v~~~Yl~L~~~~~rkGD~~~~~~Da~~~~~~~v~ 208 (211)
T TIGR00041 135 PDLTILLDIDPEVALERLRKR----G-EDELLD-REEFEKLDFFEKVRERYLELADKFERKGDKKIVVIDATNSGVEEVE 208 (211)
T ss_pred CCEEEEEEECHHHHHHHHHCC----C-CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH
T ss_conf 666898860737798875204----7-234665-5542118999999999999999841468863799866774478898
Q ss_pred HHH
Q ss_conf 999
Q gi|254780457|r 204 KVA 206 (217)
Q Consensus 204 ~~i 206 (217)
T Consensus 209 ~~I 211 (211)
T TIGR00041 209 QDI 211 (211)
T ss_pred HHC
T ss_conf 609