HHsearch alignment for GI: 254780457 and conserved domain: TIGR00041

>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=97.16  E-value=0.0036  Score=39.88  Aligned_cols=166  Identities=16%  Similarity=0.212  Sum_probs=80.0

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCC-C---EEEC--------CHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHCCC
Q ss_conf             818986668778967899999998178-3---5620--------28999998523210111014---6553333210111
Q gi|254780457|r    8 SIIIAIDGTAAAGKGVLSRFIALEYGF-H---YLDT--------GLIYRAVAKNILDAGISLDD---EKMAIKIAQNIVL   72 (217)
Q Consensus         8 ~~iIaIDGpagsGKsT~ak~lA~~l~~-~---~ldt--------G~~YR~~a~~~~~~~~~~~~---~~~~~~~~~~i~~   72 (217)
T Consensus         2 ~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR----   77 (211)
T TIGR00041         2 GMFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVLFTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAADR----   77 (211)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----
T ss_conf             7458885115875899999999997751383478871899987899999999987414666335999999999858----


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE------------CCCHHHHH-------HCC---
Q ss_conf             24444443201210011112205789999887888876303884620------------64125566-------303---
Q gi|254780457|r   73 SNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILD------------GRDIGTII-------FPD---  130 (217)
Q Consensus        73 ~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E------------GRDigTvV-------fPd---  130 (217)
T Consensus        78 -------------------~~HL~~~~~~ik~---al~-~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~  134 (211)
T TIGR00041        78 -------------------HDHLEHVEEKIKP---ALA-QGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMK  134 (211)
T ss_pred             -------------------HHHHHHHHHHHHH---HHH-CCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf             -------------------9999978987788---986-69679984112435777542256888899999775211358


Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-CCCC--C----CCEEEEECCCCCHHHHH
Q ss_conf             886899844888899998667765211135699999999985610236757-8537--9----97399977898989999
Q gi|254780457|r  131 ARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYC-PLVR--D----KDAYFFDTSEMDIGTMC  203 (217)
Q Consensus       131 A~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~s-PL~~--a----~DAi~IDTs~lsi~ev~  203 (217)
T Consensus       135 Pd~t~~Ld~d~e~al~R~~~~----g-~~~~~~-~~~~e~~d~~~~v~~~Yl~L~~~~~rkGD~~~~~~Da~~~~~~~v~  208 (211)
T TIGR00041       135 PDLTILLDIDPEVALERLRKR----G-EDELLD-REEFEKLDFFEKVRERYLELADKFERKGDKKIVVIDATNSGVEEVE  208 (211)
T ss_pred             CCEEEEEEECHHHHHHHHHCC----C-CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH
T ss_conf             666898860737798875204----7-234665-5542118999999999999999841468863799866774478898


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780457|r  204 KVA  206 (217)
Q Consensus       204 ~~i  206 (217)
T Consensus       209 ~~I  211 (211)
T TIGR00041       209 QDI  211 (211)
T ss_pred             HHC
T ss_conf             609