HHsearch alignment for GI: 254780457 and conserved domain: TIGR00235

>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=98.53  E-value=6e-07  Score=62.40  Aligned_cols=193  Identities=19%  Similarity=0.243  Sum_probs=103.6

Q ss_pred             CCCC--CCCCEEEEEECCCCCCH----HHHHHHHHHHHCCCE-----EECCHHHHHH--HHHHH--HCCCCHHH-----H
Q ss_conf             9765--55881898666877896----789999999817835-----6202899999--85232--10111014-----6
Q gi|254780457|r    1 MGRL--ESQSIIIAIDGTAAAGK----GVLSRFIALEYGFHY-----LDTGLIYRAV--AKNIL--DAGISLDD-----E   60 (217)
Q Consensus         1 m~~~--~~k~~iIaIDGpagsGK----sT~ak~lA~~l~~~~-----ldtG~~YR~~--a~~~~--~~~~~~~~-----~   60 (217)
T Consensus         1 M~~iP~~~~c~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~   80 (220)
T TIGR00235         1 MDKIPPKGTCIIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDN   80 (220)
T ss_pred             CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCH
T ss_conf             98888988617997017661015678999999999983140014577503244588988731246431258898003037


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH-HHHHHH-HCCC-EEEECCCH--HHHHHCCCCEEE
Q ss_conf             553333210111244444432012100111122057899998878-888763-0388-46206412--556630388689
Q gi|254780457|r   61 KMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDI-QRSFAQ-NKLG-VILDGRDI--GTIIFPDARIKF  135 (217)
Q Consensus        61 ~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~-Qr~~~~-~~~g-~V~EGRDi--gTvVfPdA~~Ki  135 (217)
T Consensus        81 ~Ll~~Hl~nLk~g~~~~~P~Yd--------yv~---------HtRv~~eT~~~~P~~VvIlEGi~~l~D~Rl~~L~dlki  143 (220)
T TIGR00235        81 DLLYEHLKNLKNGSAIDVPVYD--------YVN---------HTRVKKETVHVEPKDVVILEGILLLTDERLRDLMDLKI  143 (220)
T ss_pred             HHHHHHHHHHHCCCEECCCCCC--------CCC---------EECCCCCCEEECCEEEEEEECCHHHHHHHHHHHHCCEE
T ss_conf             9999999998468802245425--------410---------02025562687350689970618888799988718236


Q ss_pred             EEECCHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9844888899998667765-211135699999999985610236757853799739997789898999999999999874
Q gi|254780457|r  136 YVTASLDIRARRRYNEMVS-RGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL  214 (217)
Q Consensus       136 fL~As~e~RA~RR~~el~~-~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl  214 (217)
T Consensus       144 fvDt~~D~rliRRl~RD~~~RGR--~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~-IiP~g~~n-~~A~~~l~~~I~~l~  219 (220)
T TIGR00235       144 FVDTPLDIRLIRRLERDIEERGR--SLDSVIDQYRKTVRPMYLQFVEPTKQYADL-IIPEGGKN-EVAINVLKTKIKSLL  219 (220)
T ss_pred             EEECCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHCCCCCCCCCCCCCCCCCE-EECCCCCC-HHHHHHHHHHHHHHC
T ss_conf             77468303256565655754289--788999999985346210145501014667-62589881-688999999999860