HHsearch alignment for GI: 254780457 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=96.68 E-value=0.0012 Score=42.75 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=44.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHCCCCCCC--CCCCCCHHHHC
Q ss_conf 9866687789678999999981783562028999998523210111014-65533332101112444--44432012100
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDD-EKMAIKIAQNIVLSNLD--KAQLSSNAIAN 87 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~--~~~lr~~~I~~ 87 (217)
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L~VPfAiA----DATt--LTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDK 228 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARILNVPFAIA----DATT--LTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDK 228 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEC----CHHH--HHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCC
T ss_conf 24546888526899999998738874211----1110--20066424228899999987414552452785089842231
Q ss_pred CC
Q ss_conf 11
Q gi|254780457|r 88 VA 89 (217)
Q Consensus 88 ~~ 89 (217)
T Consensus 229 Ia 230 (452)
T TIGR00382 229 IA 230 (452)
T ss_pred HH
T ss_conf 01