HHsearch alignment for GI: 254780457 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.30 E-value=0.0024 Score=40.88 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 668778967899999998178356
Q gi|254780457|r 14 DGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 14 DGpagsGKsT~ak~lA~~l~~~~l 37 (217)
T Consensus 533 ~GPTGVGKTElak~LA~~LGv~l~ 556 (774)
T TIGR02639 533 VGPTGVGKTELAKQLAEELGVHLL 556 (774)
T ss_pred ECCCCCCHHHHHHHHHHHHCCHHC
T ss_conf 479896257889999997082001