HHsearch alignment for GI: 254780457 and conserved domain: TIGR03167

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.60  E-value=0.02  Score=35.45  Aligned_cols=131  Identities=25%  Similarity=0.286  Sum_probs=72.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf             18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r    9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV   88 (217)
Q Consensus         9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~   88 (217)
T Consensus       128 ~~~vl~G~TG~GKT~iL~~L~~~-G~qviDLE-------glAnHRGS~FG~~----------~~----~~Q---------  176 (311)
T TIGR03167       128 PLIVLGGMTGSGKTELLHALANA-GAQVLDLE-------GLANHRGSSFGAL----------GL----GPQ---------  176 (311)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC-CCCCCCHH-------HHHHCCCCCCCCC----------CC----CCC---------
T ss_conf             76998788887789999999976-99742589-------9863146534688----------88----999---------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE--CCCHHHHHHCCC-------CEEEEEECCHHHHHHHHHHHHHHHHCC-
Q ss_conf             1112205789999887888876303884620--641255663038-------868998448888999986677652111-
Q gi|254780457|r   89 ASQVASIDSVRDALIDIQRSFAQNKLGVILD--GRDIGTIIFPDA-------RIKFYVTASLDIRARRRYNEMVSRGEK-  158 (217)
Q Consensus        89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E--GRDigTvVfPdA-------~~KifL~As~e~RA~RR~~el~~~g~~-  158 (217)
T Consensus       177 ---Ps-Qk~FEn~l~~~l~~~-~~~~~i~vE~ES~~IG~~~iP~~l~~~M~~a~~i~i~~~le~Rv~~l~~~Y~~~~~~~  251 (311)
T TIGR03167       177 ---PS-QKRFENALAEALRRL-DPGRPIFVEDESRRIGRVALPDALFEAMRAAPLVELEASLEERVERLVEEYAGFEEDP  251 (311)
T ss_pred             ---CC-HHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             ---78-999999999999817-8889569960331305713899999998519989998999999999999863043369


Q ss_pred             CCHHHHHHHHHHHHHHC
Q ss_conf             35699999999985610
Q gi|254780457|r  159 VDYVKILEDLRNRDNQD  175 (217)
Q Consensus       159 ~~~~ev~~~i~~RD~~D  175 (217)
T Consensus       252 ~~l~~~l~~i~krlG~~  268 (311)
T TIGR03167       252 EFLAAALERIRKRLGGE  268 (311)
T ss_pred             HHHHHHHHHHHHHCCHH
T ss_conf             99999999999864999