HHsearch alignment for GI: 254780457 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.23 E-value=0.37 Score=27.80 Aligned_cols=131 Identities=15% Similarity=0.272 Sum_probs=61.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-----CCCEEECC----HHHHHHHHHHH----HC-----CCCHHHHHHHHHHHH-
Q ss_conf 8189866687789678999999981-----78356202----89999985232----10-----111014655333321-
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY-----GFHYLDTG----LIYRAVAKNIL----DA-----GISLDDEKMAIKIAQ- 68 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l-----~~~~ldtG----~~YR~~a~~~~----~~-----~~~~~~~~~~~~~~~- 68 (217)
T Consensus 19 G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~i~v~~~~~~~~~~~~i~~~~~ 98 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETET 98 (218)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 87999989999849999999999986369869999665567699999987536665305146267876889999999997
Q ss_pred ----HCCCCCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEC-----------CCHHHHHHCC-
Q ss_conf ----011124444-4432012100111122057899998878888763038-846206-----------4125566303-
Q gi|254780457|r 69 ----NIVLSNLDK-AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKL-GVILDG-----------RDIGTIIFPD- 130 (217)
Q Consensus 69 ----~i~~~~~~~-~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~-g~V~EG-----------RDigTvVfPd- 130 (217)
T Consensus 99 ~~~~~~~lvViDSi~tl~~~e~~~~~~~~~~~r~l~~~~~~L~-~~Ak~~~~~vil~nqVt~~~~~~~~~p~GG~~LeH~ 177 (218)
T cd01394 99 FADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLL-WLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHW 177 (218)
T ss_pred HHHCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHCCCEEEEEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 6414772999914045545540689647999999999999999-998766988999921588457775655672041411
Q ss_pred CCEEEEEEC
Q ss_conf 886899844
Q gi|254780457|r 131 ARIKFYVTA 139 (217)
Q Consensus 131 A~~KifL~A 139 (217)
T Consensus 178 vd~vl~~e~ 186 (218)
T cd01394 178 SKVILRLEK 186 (218)
T ss_pred CCEEEEEEC
T ss_conf 028999984