HHsearch alignment for GI: 254780457 and conserved domain: cd01882
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.85 E-value=0.01 Score=37.16 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=30.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCE---------EECCHHHH
Q ss_conf 5881898666877896789999999817835---------62028999
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHY---------LDTGLIYR 44 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~---------ldtG~~YR 44 (217)
T Consensus 37 pPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rR 84 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRR 84 (225)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEE
T ss_conf 999699998989977889999999998544375578887999468426