HHsearch alignment for GI: 254780457 and conserved domain: cd03115
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.44 E-value=0.045 Score=33.32 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE----EECCHHHHHHHHH
Q ss_conf 898666877896789999999817835----6202899999852
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHY----LDTGLIYRAVAKN 49 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~----ldtG~~YR~~a~~ 49 (217)
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~e 45 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIE 45 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 99998999998899999999999976992899974887577999