HHsearch alignment for GI: 254780457 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.71 E-value=0.028 Score=34.52 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=25.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
T Consensus 48 GeivgilG~NGaGKSTLl~~i~G---l~~p~~G~I 79 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAG---IYPPDSGTV 79 (224)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCCEE
T ss_conf 98999997999819999999975---877787769