HHsearch alignment for GI: 254780457 and conserved domain: cd03237

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.86  E-value=0.0068  Score=38.21  Aligned_cols=30  Identities=27%  Similarity=0.289  Sum_probs=23.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf             189866687789678999999981783562028
Q gi|254780457|r    9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL   41 (217)
Q Consensus         9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~   41 (217)
T Consensus        26 Eiv~liGpNGaGKSTLlk~l~Gll---~p~~G~   55 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVL---KPDEGD   55 (246)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCC---CCCCCE
T ss_conf             899999799976999999997787---888607