HHsearch alignment for GI: 254780457 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.48 E-value=0.013 Score=36.52 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
T Consensus 22 ~~itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8889999899999999999986304