HHsearch alignment for GI: 254780457 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.49 E-value=0.0021 Score=41.20 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1898666877896789999999817
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
T Consensus 41 e~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9999999999849999999964546