HHsearch alignment for GI: 254780457 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.12 E-value=0.0045 Score=39.29 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
T Consensus 28 G~~vaivG~sGsGKSTll~ll~gl~ 52 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999999985999999996776