HHsearch alignment for GI: 254780457 and conserved domain: cd03270

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.09  E-value=0.046  Score=33.24  Aligned_cols=19  Identities=26%  Similarity=0.595  Sum_probs=15.9

Q ss_pred             CCEEEEEECCCCCCHHHHH
Q ss_conf             8818986668778967899
Q gi|254780457|r    7 QSIIIAIDGTAAAGKGVLS   25 (217)
Q Consensus         7 k~~iIaIDGpagsGKsT~a   25 (217)
T Consensus        20 ~Ge~~aIvG~nGsGKSTL~   38 (226)
T cd03270          20 RNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             CCCEEEEECCCCCHHHHHH
T ss_conf             9989999878996098983