HHsearch alignment for GI: 254780457 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.09 E-value=0.046 Score=33.24 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=15.9
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8818986668778967899
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLS 25 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~a 25 (217)
T Consensus 20 ~Ge~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 20 RNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CCCEEEEECCCCCHHHHHH
T ss_conf 9989999878996098983