Query gi|254780457|ref|YP_003064870.1| cytidylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 217
No_of_seqs 119 out of 2772
Neff 5.6
Searched_HMMs 39220
Date Sun May 29 18:44:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780457.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00023 cmk cytidylate kinase 100.0 0 0 509.1 19.6 210 5-215 1-224 (225)
2 PRK13477 bifunctional pantoate 100.0 0 0 503.6 19.7 211 4-215 280-506 (512)
3 PRK11860 bifunctional 3-phosph 100.0 0 0 501.9 19.1 208 7-215 440-658 (662)
4 COG0283 Cmk Cytidylate kinase 100.0 0 0 496.5 19.4 209 7-215 3-222 (222)
5 TIGR00017 cmk cytidylate kinas 100.0 0 0 489.8 15.9 203 7-209 1-222 (223)
6 PRK12269 bifunctional cytidyla 100.0 0 0 481.2 18.9 202 7-212 33-285 (863)
7 PRK09518 bifunctional cytidyla 100.0 0 0 468.4 18.9 203 7-214 3-229 (714)
8 cd02020 CMPK Cytidine monophos 100.0 0 0 376.6 13.9 147 10-195 1-147 (147)
9 pfam02224 Cytidylate_kin Cytid 100.0 0 0 322.8 10.0 140 68-208 18-158 (158)
10 PRK04182 cytidylate kinase; Pr 100.0 2.6E-37 6.6E-42 243.8 18.1 171 9-216 1-176 (178)
11 COG1102 Cmk Cytidylate kinase 100.0 1.2E-31 3E-36 210.0 16.7 166 9-213 1-173 (179)
12 TIGR02173 cyt_kin_arch cytidyl 100.0 3E-32 7.6E-37 213.6 12.7 163 9-211 1-173 (173)
13 PRK00131 aroK shikimate kinase 99.6 2.7E-14 7E-19 106.3 16.9 164 7-215 3-174 (175)
14 PRK05480 uridine kinase; Provi 99.6 4.5E-14 1.1E-18 105.0 14.1 194 4-216 2-208 (209)
15 PRK03839 putative kinase; Prov 99.6 8.3E-14 2.1E-18 103.4 13.7 151 9-215 1-156 (180)
16 PRK08233 hypothetical protein; 99.5 6.9E-13 1.8E-17 97.9 15.0 170 6-213 1-178 (182)
17 PRK07429 phosphoribulokinase; 99.5 7.8E-13 2E-17 97.6 10.9 168 1-190 1-182 (331)
18 COG0572 Udk Uridine kinase [Nu 99.4 4.1E-12 1E-16 93.3 11.3 174 6-198 6-193 (218)
19 PTZ00301 uridine kinase; Provi 99.4 9E-12 2.3E-16 91.2 11.3 189 6-216 1-209 (210)
20 cd02023 UMPK Uridine monophosp 99.4 7.4E-12 1.9E-16 91.7 10.4 181 10-212 1-197 (198)
21 COG1936 Predicted nucleotide k 99.4 8.1E-11 2.1E-15 85.5 15.5 149 9-212 1-156 (180)
22 PRK13946 shikimate kinase; Pro 99.3 4.1E-10 1.1E-14 81.3 18.2 162 4-215 18-189 (195)
23 PRK05541 adenylylsulfate kinas 99.3 6.4E-11 1.6E-15 86.1 13.2 167 3-214 2-174 (176)
24 PRK00889 adenylylsulfate kinas 99.3 1.2E-10 2.9E-15 84.6 13.4 165 5-213 1-171 (175)
25 PRK13948 shikimate kinase; Pro 99.3 3.7E-10 9.6E-15 81.6 15.8 167 1-216 1-179 (182)
26 PRK00279 adk adenylate kinase; 99.3 5.6E-11 1.4E-15 86.5 11.4 170 9-212 1-214 (215)
27 PRK03846 adenylylsulfate kinas 99.3 2.5E-10 6.4E-15 82.6 13.9 167 4-213 20-193 (198)
28 PRK08154 anaerobic benzoate ca 99.3 8.8E-10 2.2E-14 79.4 16.5 161 7-214 132-303 (304)
29 PRK05057 aroK shikimate kinase 99.3 1.2E-09 3.1E-14 78.5 17.2 155 10-212 6-171 (172)
30 PRK13808 adenylate kinase; Pro 99.2 3.7E-10 9.5E-15 81.6 13.3 174 9-210 1-191 (297)
31 PRK01184 hypothetical protein; 99.2 9.5E-10 2.4E-14 79.2 15.1 174 9-217 2-182 (183)
32 PRK13949 shikimate kinase; Pro 99.2 1.3E-09 3.3E-14 78.4 15.6 154 11-209 4-168 (169)
33 KOG3354 consensus 99.2 1.9E-09 4.9E-14 77.3 15.6 169 9-214 13-190 (191)
34 PRK13947 shikimate kinase; Pro 99.2 1.5E-09 3.7E-14 78.0 15.0 157 11-216 4-170 (171)
35 PRK00081 coaE dephospho-CoA ki 99.2 1.8E-09 4.6E-14 77.5 15.0 189 9-216 3-198 (199)
36 PRK03731 aroL shikimate kinase 99.2 4.5E-09 1.2E-13 75.1 16.5 157 11-214 5-172 (172)
37 TIGR01351 adk adenylate kinase 99.2 4E-11 1E-15 87.4 5.7 114 13-147 4-131 (232)
38 PRK09825 idnK D-gluconate kina 99.2 2.4E-09 6.2E-14 76.7 14.8 160 4-212 1-168 (176)
39 PRK08356 hypothetical protein; 99.2 2.5E-09 6.3E-14 76.7 14.8 178 4-212 1-192 (195)
40 PRK02496 adk adenylate kinase; 99.2 1.4E-09 3.5E-14 78.2 13.3 167 7-211 2-183 (185)
41 pfam00485 PRK Phosphoribulokin 99.1 6.5E-10 1.7E-14 80.1 10.2 164 10-190 1-186 (196)
42 pfam01202 SKI Shikimate kinase 99.1 1.6E-08 4E-13 71.9 15.5 150 17-211 1-158 (158)
43 PRK06696 uridine kinase; Valid 99.0 2.2E-09 5.7E-14 76.9 9.6 171 6-198 24-217 (227)
44 PRK00698 tmk thymidylate kinas 99.0 9.4E-08 2.4E-12 67.2 17.1 184 6-214 1-204 (204)
45 cd02024 NRK1 Nicotinamide ribo 99.0 5.7E-10 1.5E-14 80.5 5.7 136 10-150 1-150 (187)
46 TIGR01360 aden_kin_iso1 adenyl 99.0 3.2E-09 8.2E-14 76.0 8.8 175 10-212 5-190 (191)
47 COG0563 Adk Adenylate kinase a 99.0 3.8E-10 9.6E-15 81.6 3.7 40 9-48 1-40 (178)
48 PTZ00088 adenylate kinase 1; P 99.0 5.8E-09 1.5E-13 74.4 9.8 116 9-147 1-122 (225)
49 PRK11545 gntK gluconate kinase 99.0 4.2E-08 1.1E-12 69.3 14.1 173 1-212 1-173 (177)
50 KOG3079 consensus 99.0 4.1E-08 1.1E-12 69.3 13.9 177 6-212 6-193 (195)
51 PRK04220 2-phosphoglycerate ki 99.0 1E-07 2.6E-12 67.0 15.5 187 6-215 90-293 (306)
52 pfam00406 ADK Adenylate kinase 98.9 5.9E-09 1.5E-13 74.4 8.9 110 14-150 2-121 (186)
53 PRK09270 frcK putative fructos 98.9 1.3E-08 3.2E-13 72.4 10.3 174 5-195 31-223 (230)
54 PRK05537 bifunctional sulfate 98.9 4.8E-08 1.2E-12 68.9 13.3 169 5-213 389-563 (568)
55 cd01428 ADK Adenylate kinase ( 98.9 8.4E-09 2.1E-13 73.5 9.1 110 11-147 2-121 (194)
56 PRK07667 uridine kinase; Provi 98.9 3.5E-09 8.9E-14 75.8 7.1 32 2-33 8-39 (190)
57 pfam01583 APS_kinase Adenylyls 98.9 2.2E-08 5.5E-13 71.0 10.8 148 7-199 1-157 (157)
58 cd02021 GntK Gluconate kinase 98.9 7.2E-08 1.8E-12 67.9 13.4 50 11-60 2-51 (150)
59 cd01672 TMPK Thymidine monopho 98.9 3.3E-08 8.3E-13 70.0 11.5 25 9-33 1-25 (200)
60 COG0237 CoaE Dephospho-CoA kin 98.9 6.4E-08 1.6E-12 68.2 12.2 179 8-213 2-193 (201)
61 cd02030 NDUO42 NADH:Ubiquinone 98.9 6.3E-08 1.6E-12 68.2 12.1 29 10-38 1-29 (219)
62 PRK13975 thymidylate kinase; P 98.9 1.6E-07 4.2E-12 65.8 14.1 84 128-215 111-195 (198)
63 COG0529 CysC Adenylylsulfate k 98.9 8.7E-08 2.2E-12 67.4 12.2 160 4-212 19-191 (197)
64 PRK00625 shikimate kinase; Pro 98.9 1.1E-07 2.7E-12 66.9 12.6 153 9-209 1-170 (173)
65 pfam01121 CoaE Dephospho-CoA k 98.8 7.3E-08 1.9E-12 67.9 11.6 141 9-167 1-153 (179)
66 PRK05506 bifunctional sulfate 98.8 3.5E-08 8.8E-13 69.8 9.8 159 6-213 441-612 (613)
67 cd02026 PRK Phosphoribulokinas 98.8 4.5E-08 1.2E-12 69.1 10.1 163 10-190 1-173 (273)
68 cd02022 DPCK Dephospho-coenzym 98.8 6.7E-08 1.7E-12 68.1 10.7 141 10-167 1-153 (179)
69 PRK06547 hypothetical protein; 98.8 1.3E-08 3.3E-13 72.4 6.6 159 9-198 16-176 (184)
70 PRK06217 hypothetical protein; 98.8 3.7E-08 9.4E-13 69.7 8.8 160 9-213 2-180 (185)
71 cd00464 SK Shikimate kinase (S 98.8 2.1E-07 5.5E-12 65.1 12.2 144 11-201 2-154 (154)
72 PRK12338 hypothetical protein; 98.8 1.4E-06 3.5E-11 60.3 16.2 192 5-213 1-207 (320)
73 cd02028 UMPK_like Uridine mono 98.8 3.5E-08 8.9E-13 69.8 7.6 164 10-193 1-178 (179)
74 TIGR01359 UMP_CMP_kin_fam UMP- 98.8 4.6E-08 1.2E-12 69.1 8.1 168 13-209 4-187 (189)
75 COG0703 AroK Shikimate kinase 98.7 4.7E-07 1.2E-11 63.1 12.9 157 9-213 3-169 (172)
76 cd01673 dNK Deoxyribonucleosid 98.7 4.5E-07 1.2E-11 63.1 12.8 29 10-38 1-29 (193)
77 cd02025 PanK Pantothenate kina 98.7 5.8E-08 1.5E-12 68.5 7.8 24 10-33 1-24 (220)
78 PRK13973 thymidylate kinase; P 98.7 1.1E-06 2.9E-11 60.8 14.2 75 129-217 127-211 (216)
79 PRK13974 thymidylate kinase; P 98.7 6.5E-07 1.7E-11 62.2 12.4 77 129-217 133-211 (212)
80 TIGR01313 therm_gnt_kin carboh 98.7 1.3E-06 3.4E-11 60.3 13.7 154 14-211 4-174 (175)
81 TIGR00455 apsK adenylylsulfate 98.7 8.9E-08 2.3E-12 67.4 7.4 159 3-210 14-187 (187)
82 COG3265 GntK Gluconate kinase 98.7 1.3E-06 3.2E-11 60.5 12.8 149 15-212 2-159 (161)
83 PRK05416 hypothetical protein; 98.6 6.9E-07 1.8E-11 62.0 11.2 145 10-211 8-160 (292)
84 COG2074 2-phosphoglycerate kin 98.6 6.7E-06 1.7E-10 56.1 16.2 191 4-214 85-289 (299)
85 PRK13951 bifunctional shikimat 98.6 1.2E-06 3E-11 60.7 12.0 145 9-206 1-155 (488)
86 PRK12339 2-phosphoglycerate ki 98.6 5E-06 1.3E-10 56.9 15.1 180 7-211 2-196 (197)
87 COG1428 Deoxynucleoside kinase 98.6 8.2E-07 2.1E-11 61.6 10.0 32 6-37 2-33 (216)
88 PRK08118 topology modulation p 98.6 5.3E-07 1.3E-11 62.8 8.8 91 10-147 3-95 (167)
89 TIGR00235 udk uridine kinase; 98.5 6E-07 1.5E-11 62.4 8.4 193 1-214 1-219 (220)
90 PRK07261 topology modulation p 98.5 7.3E-07 1.9E-11 61.9 8.6 96 9-151 1-102 (171)
91 pfam03668 ATP_bind_2 P-loop AT 98.5 1.5E-06 3.9E-11 60.0 10.0 149 10-211 3-155 (284)
92 cd02027 APSK Adenosine 5'-phos 98.4 2.2E-06 5.6E-11 59.0 9.2 142 10-194 1-149 (149)
93 COG0125 Tmk Thymidylate kinase 98.4 2.2E-05 5.5E-10 53.1 14.1 31 6-36 1-31 (208)
94 PRK10078 ribose 1,5-bisphospho 98.4 4.4E-06 1.1E-10 57.2 10.5 167 10-214 4-178 (184)
95 PRK12337 2-phosphoglycerate ki 98.4 4.7E-05 1.2E-09 51.1 15.2 194 5-214 259-470 (492)
96 PRK03333 coaE dephospho-CoA ki 98.3 1.6E-05 4.1E-10 53.9 11.3 175 9-214 2-194 (394)
97 cd02019 NK Nucleoside/nucleoti 98.3 5.6E-07 1.4E-11 62.6 3.1 30 10-39 1-33 (69)
98 PRK00300 gmk guanylate kinase; 98.3 1.3E-05 3.3E-10 54.4 10.1 174 3-212 2-187 (208)
99 COG1660 Predicted P-loop-conta 98.2 2.8E-05 7.2E-10 52.4 10.3 148 10-211 3-156 (286)
100 PRK13976 thymidylate kinase; P 98.1 7.8E-05 2E-09 49.8 11.1 25 9-33 1-25 (202)
101 TIGR03574 selen_PSTK L-seryl-t 98.1 0.00019 4.9E-09 47.5 12.8 147 11-214 2-171 (249)
102 TIGR03263 guanyl_kin guanylate 98.0 0.00013 3.2E-09 48.6 10.3 166 9-211 2-179 (180)
103 cd00227 CPT Chloramphenicol (C 97.9 0.00072 1.8E-08 44.0 13.5 158 9-210 3-174 (175)
104 pfam02223 Thymidylate_kin Thym 97.9 0.00031 8E-09 46.2 11.6 21 13-33 1-21 (186)
105 pfam07931 CPT Chloramphenicol 97.9 0.0019 4.9E-08 41.5 15.4 157 10-210 3-173 (174)
106 KOG3347 consensus 97.9 0.00014 3.6E-09 48.3 8.9 149 9-209 8-163 (176)
107 COG0194 Gmk Guanylate kinase [ 97.9 0.00023 5.9E-09 47.0 10.0 170 7-212 3-182 (191)
108 pfam00625 Guanylate_kin Guanyl 97.9 0.00036 9.2E-09 45.8 11.0 166 10-212 3-181 (182)
109 KOG3220 consensus 97.8 0.00089 2.3E-08 43.5 12.0 120 9-147 2-142 (225)
110 COG1072 CoaA Panthothenate kin 97.8 0.00019 4.8E-09 47.5 8.4 134 5-153 79-232 (283)
111 PRK00091 miaA tRNA delta(2)-is 97.8 0.00035 8.8E-09 45.9 9.4 42 6-47 2-45 (304)
112 COG4088 Predicted nucleotide k 97.7 0.00055 1.4E-08 44.7 10.0 149 10-196 3-158 (261)
113 PRK04040 adenylate kinase; Pro 97.7 0.00029 7.3E-09 46.4 8.1 160 9-211 3-188 (189)
114 PRK04195 replication factor C 97.6 6.5E-05 1.7E-09 50.2 4.3 30 7-38 41-70 (403)
115 PRK06762 hypothetical protein; 97.6 0.0034 8.7E-08 40.0 13.1 148 10-212 4-164 (166)
116 PRK07933 thymidylate kinase; V 97.6 0.0064 1.6E-07 38.4 16.1 25 9-33 1-25 (213)
117 KOG3877 consensus 97.6 7.3E-05 1.9E-09 50.0 3.5 34 5-38 68-101 (393)
118 pfam03215 Rad17 Rad17 cell cyc 97.5 0.00014 3.6E-09 48.3 4.4 31 8-38 45-75 (490)
119 TIGR02868 CydC ABC transporter 97.5 8.8E-05 2.3E-09 49.5 3.1 58 9-97 388-445 (566)
120 TIGR01846 type_I_sec_HlyB type 97.5 8.3E-05 2.1E-09 49.6 2.8 26 9-35 492-517 (703)
121 KOG3327 consensus 97.4 0.0039 1E-07 39.6 10.8 177 5-215 2-198 (208)
122 TIGR01193 bacteriocin_ABC ABC- 97.4 9.3E-05 2.4E-09 49.3 2.5 28 9-36 501-530 (710)
123 KOG3308 consensus 97.4 0.00033 8.3E-09 46.1 5.2 133 6-151 2-148 (225)
124 smart00072 GuKc Guanylate kina 97.4 0.0052 1.3E-07 38.9 11.3 86 112-212 92-182 (184)
125 KOG0635 consensus 97.4 0.0037 9.6E-08 39.7 10.3 158 4-213 27-201 (207)
126 PRK13342 recombination factor 97.2 0.0003 7.7E-09 46.3 3.2 31 8-40 39-69 (417)
127 PRK05439 pantothenate kinase; 97.2 0.0014 3.6E-08 42.3 6.6 136 5-154 83-244 (312)
128 TIGR00041 DTMP_kinase thymidyl 97.2 0.0036 9.1E-08 39.9 8.4 166 8-206 2-211 (211)
129 TIGR00602 rad24 checkpoint pro 97.2 0.00028 7.3E-09 46.4 2.8 30 9-38 119-148 (670)
130 pfam05496 RuvB_N Holliday junc 97.1 0.00032 8.3E-09 46.1 3.0 28 13-40 55-82 (234)
131 PRK10790 putative multidrug tr 97.1 0.00048 1.2E-08 45.1 3.8 31 8-41 367-397 (593)
132 PRK10789 putative multidrug tr 97.1 0.00049 1.2E-08 45.0 3.8 27 8-34 341-367 (569)
133 pfam06414 Zeta_toxin Zeta toxi 97.1 0.0068 1.7E-07 38.2 9.6 122 6-157 10-147 (191)
134 KOG3078 consensus 97.1 0.00035 8.9E-09 45.9 2.8 40 7-46 14-53 (235)
135 COG0324 MiaA tRNA delta(2)-iso 97.1 0.0048 1.2E-07 39.1 8.7 41 7-47 2-44 (308)
136 TIGR00763 lon ATP-dependent pr 97.1 0.00066 1.7E-08 44.2 3.8 33 5-37 446-479 (941)
137 PRK11174 cysteine/glutathione 97.0 0.00063 1.6E-08 44.4 3.7 31 7-41 375-405 (588)
138 TIGR01842 type_I_sec_PrtD type 97.0 0.0004 1E-08 45.6 2.6 35 10-44 358-396 (556)
139 pfam00004 AAA ATPase family as 97.0 0.00058 1.5E-08 44.6 3.3 26 13-38 3-28 (131)
140 COG2019 AdkA Archaeal adenylat 97.0 0.033 8.5E-07 34.1 15.4 163 8-212 4-188 (189)
141 PRK13341 recombination factor 96.9 0.00065 1.7E-08 44.3 3.0 28 11-38 55-82 (726)
142 PRK11176 lipid transporter ATP 96.9 0.00074 1.9E-08 44.0 3.0 27 8-34 368-394 (581)
143 TIGR02640 gas_vesic_GvpN gas v 96.9 0.00068 1.7E-08 44.2 2.7 30 8-37 21-50 (265)
144 TIGR01187 potA polyamine ABC t 96.9 0.00039 1E-08 45.6 1.4 24 15-41 3-26 (331)
145 cd03297 ABC_ModC_molybdenum_tr 96.9 0.00037 9.5E-09 45.7 1.3 32 8-42 23-54 (214)
146 KOG0744 consensus 96.8 0.00093 2.4E-08 43.3 3.1 204 9-214 178-419 (423)
147 PRK11160 cysteine/glutathione 96.8 0.00087 2.2E-08 43.5 2.9 26 8-33 367-392 (575)
148 cd00009 AAA The AAA+ (ATPases 96.8 0.0013 3.4E-08 42.5 3.7 38 10-47 21-63 (151)
149 COG1618 Predicted nucleotide k 96.8 0.0015 3.8E-08 42.2 3.9 29 7-35 4-32 (179)
150 TIGR02397 dnaX_nterm DNA polym 96.8 0.00076 1.9E-08 43.9 2.4 27 13-40 41-67 (363)
151 COG1132 MdlB ABC-type multidru 96.8 0.00062 1.6E-08 44.4 1.9 28 7-34 354-381 (567)
152 cd03250 ABCC_MRP_domain1 Domai 96.8 0.00089 2.3E-08 43.5 2.7 33 8-43 31-63 (204)
153 PRK10522 multidrug transporter 96.8 0.00087 2.2E-08 43.5 2.5 29 9-40 350-378 (547)
154 pfam08433 KTI12 Chromatin asso 96.8 0.052 1.3E-06 32.9 13.6 153 11-207 2-166 (266)
155 cd03229 ABC_Class3 This class 96.7 0.00056 1.4E-08 44.7 1.4 33 8-43 26-58 (178)
156 COG2274 SunT ABC-type bacterio 96.7 0.0012 3.1E-08 42.7 3.0 24 10-33 501-524 (709)
157 TIGR02203 MsbA_lipidA lipid A 96.7 0.00084 2.1E-08 43.6 2.2 30 8-40 388-417 (603)
158 PRK11432 fbpC ferric transport 96.7 0.0005 1.3E-08 45.0 1.0 33 8-43 32-64 (351)
159 TIGR03608 L_ocin_972_ABC putat 96.7 0.00062 1.6E-08 44.4 1.4 33 7-42 23-55 (206)
160 COG2256 MGS1 ATPase related to 96.7 0.0013 3.2E-08 42.6 2.9 31 8-40 50-80 (436)
161 cd03278 ABC_SMC_barmotin Barmo 96.7 0.0018 4.6E-08 41.6 3.7 26 7-33 22-47 (197)
162 COG4619 ABC-type uncharacteriz 96.7 0.0012 3.1E-08 42.7 2.8 31 8-41 29-59 (223)
163 PRK13657 cyclic beta-1,2-gluca 96.7 0.0015 3.8E-08 42.2 3.2 26 8-33 361-386 (585)
164 cd00071 GMPK Guanosine monopho 96.7 0.0015 3.8E-08 42.1 3.2 25 10-34 1-25 (137)
165 PRK03992 proteasome-activating 96.7 0.0015 3.9E-08 42.1 3.2 29 11-39 169-197 (390)
166 TIGR00382 clpX ATP-dependent C 96.7 0.0012 3E-08 42.7 2.6 73 11-89 155-230 (452)
167 PRK13648 cbiO cobalt transport 96.7 0.0015 3.9E-08 42.1 3.1 24 8-31 35-58 (269)
168 TIGR01526 nadR_NMN_Atrans nico 96.7 0.0018 4.6E-08 41.6 3.5 38 10-47 177-215 (346)
169 PRK10247 putative ABC transpor 96.7 0.00082 2.1E-08 43.7 1.7 30 8-40 33-62 (225)
170 PRK11264 putative amino-acid A 96.7 0.0016 4E-08 42.0 3.1 32 8-42 27-58 (248)
171 cd03291 ABCC_CFTR1 The CFTR su 96.6 0.0018 4.7E-08 41.6 3.2 32 8-42 63-94 (282)
172 PHA02244 ATPase-like protein 96.6 0.0016 4E-08 42.0 2.9 47 3-49 114-160 (383)
173 TIGR03167 tRNA_sel_U_synt tRNA 96.6 0.02 5E-07 35.4 8.4 131 9-175 128-268 (311)
174 PRK10419 nikE nickel transport 96.6 0.00083 2.1E-08 43.7 1.3 31 9-42 39-69 (266)
175 COG1124 DppF ABC-type dipeptid 96.6 0.0018 4.5E-08 41.7 3.0 29 9-40 34-62 (252)
176 COG0645 Predicted kinase [Gene 96.6 0.068 1.7E-06 32.2 11.6 108 10-147 3-120 (170)
177 cd03253 ABCC_ATM1_transporter 96.6 0.0009 2.3E-08 43.4 1.5 24 9-32 28-51 (236)
178 cd03246 ABCC_Protease_Secretio 96.6 0.002 5.2E-08 41.3 3.3 32 7-41 27-58 (173)
179 KOG1970 consensus 96.6 0.0026 6.6E-08 40.7 3.8 29 10-38 112-140 (634)
180 cd03299 ABC_ModC_like Archeal 96.6 0.00082 2.1E-08 43.7 1.2 32 8-42 25-56 (235)
181 PRK08099 nicotinamide-nucleoti 96.6 0.0048 1.2E-07 39.1 5.2 34 10-43 233-267 (411)
182 KOG4203 consensus 96.6 0.0063 1.6E-07 38.4 5.6 171 6-192 42-234 (473)
183 cd03257 ABC_NikE_OppD_transpor 96.5 0.0019 4.7E-08 41.6 2.9 30 8-40 31-60 (228)
184 cd03296 ABC_CysA_sulfate_impor 96.5 0.0019 4.9E-08 41.5 2.8 30 8-40 28-57 (239)
185 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.5 0.0012 3.1E-08 42.7 1.8 25 8-32 29-53 (238)
186 cd03248 ABCC_TAP TAP, the Tran 96.5 0.0021 5.4E-08 41.2 2.9 25 9-33 41-65 (226)
187 PRK13635 cbiO cobalt transport 96.5 0.0021 5.4E-08 41.2 2.9 100 93-212 170-278 (279)
188 PRK09493 glnQ glutamine ABC tr 96.5 0.0013 3.4E-08 42.4 1.9 33 7-42 26-58 (240)
189 cd03251 ABCC_MsbA MsbA is an e 96.5 0.0011 2.9E-08 42.8 1.4 25 8-32 28-52 (234)
190 COG3842 PotA ABC-type spermidi 96.5 0.0026 6.5E-08 40.7 3.2 30 9-41 32-61 (352)
191 PRK10787 DNA-binding ATP-depen 96.5 0.0042 1.1E-07 39.4 4.3 33 5-37 346-378 (784)
192 TIGR02857 CydD ABC transporter 96.5 0.0023 5.8E-08 41.1 2.9 29 9-40 379-407 (570)
193 TIGR03375 type_I_sec_LssB type 96.4 0.002 5.1E-08 41.4 2.5 26 8-33 491-516 (694)
194 smart00382 AAA ATPases associa 96.4 0.0032 8.3E-08 40.1 3.6 28 9-36 3-30 (148)
195 TIGR02324 CP_lyasePhnL phospho 96.4 0.0022 5.5E-08 41.2 2.5 28 10-40 36-63 (224)
196 PRK11629 lolD lipoprotein tran 96.4 0.0027 6.9E-08 40.6 3.0 32 8-42 35-66 (233)
197 cd03294 ABC_Pro_Gly_Bertaine T 96.4 0.0025 6.3E-08 40.8 2.7 32 8-42 50-81 (269)
198 cd03262 ABC_HisP_GlnQ_permease 96.4 0.0027 7E-08 40.6 2.9 31 8-41 26-56 (213)
199 cd03261 ABC_Org_Solvent_Resist 96.4 0.0015 3.7E-08 42.2 1.5 31 8-41 26-56 (235)
200 CHL00195 ycf46 Ycf46; Provisio 96.4 0.0033 8.4E-08 40.1 3.3 34 11-44 262-297 (491)
201 cd03292 ABC_FtsE_transporter F 96.4 0.0029 7.4E-08 40.4 2.9 31 8-41 27-57 (214)
202 CHL00181 cbbX CbbX; Provisiona 96.3 0.0044 1.1E-07 39.3 3.8 35 8-42 59-94 (287)
203 TIGR03415 ABC_choXWV_ATP choli 96.3 0.0029 7.5E-08 40.4 2.9 24 8-31 50-73 (382)
204 PRK12402 replication factor C 96.3 0.003 7.6E-08 40.3 2.9 27 12-38 40-66 (337)
205 TIGR00958 3a01208 antigen pept 96.3 0.0032 8.3E-08 40.1 3.0 127 9-151 560-715 (770)
206 cd03260 ABC_PstB_phosphate_tra 96.3 0.0033 8.5E-08 40.1 3.0 27 8-34 26-52 (227)
207 PRK13650 cbiO cobalt transport 96.3 0.0031 7.8E-08 40.3 2.8 99 94-212 168-275 (276)
208 PRK13633 cobalt transporter AT 96.3 0.0032 8.2E-08 40.1 2.9 96 94-209 176-280 (281)
209 TIGR02639 ClpA ATP-dependent C 96.3 0.0024 6.2E-08 40.9 2.3 24 14-37 533-556 (774)
210 PRK10070 glycine betaine trans 96.3 0.0031 8E-08 40.2 2.8 25 8-32 54-78 (400)
211 PRK10619 histidine/lysine/argi 96.3 0.0035 8.8E-08 40.0 3.1 31 8-41 31-61 (257)
212 PRK11784 tRNA 2-selenouridine 96.3 0.046 1.2E-06 33.3 8.8 120 10-171 139-267 (333)
213 TIGR00968 3a0106s01 sulfate AB 96.3 0.0031 8E-08 40.2 2.8 32 8-42 26-57 (241)
214 cd03301 ABC_MalK_N The N-termi 96.3 0.0035 8.8E-08 39.9 3.0 32 8-42 26-57 (213)
215 cd03245 ABCC_bacteriocin_expor 96.3 0.0038 9.6E-08 39.7 3.2 26 7-32 29-54 (220)
216 cd03256 ABC_PhnC_transporter A 96.3 0.0034 8.7E-08 40.0 2.9 31 8-41 27-57 (241)
217 PRK10584 putative ABC transpor 96.3 0.0031 8E-08 40.2 2.7 32 8-42 36-67 (228)
218 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.3 0.0034 8.6E-08 40.0 2.9 25 9-33 31-55 (218)
219 KOG2004 consensus 96.3 0.0051 1.3E-07 39.0 3.8 38 5-42 435-474 (906)
220 cd03226 ABC_cobalt_CbiO_domain 96.3 0.0038 9.6E-08 39.7 3.1 25 8-32 26-50 (205)
221 PRK13634 cbiO cobalt transport 96.2 0.0031 7.9E-08 40.3 2.6 101 94-212 163-272 (276)
222 cd03234 ABCG_White The White s 96.2 0.0032 8.2E-08 40.1 2.7 27 8-34 33-59 (226)
223 PRK13642 cbiO cobalt transport 96.2 0.0034 8.5E-08 40.0 2.7 97 93-209 170-275 (277)
224 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.0035 8.9E-08 39.9 2.8 32 8-42 30-61 (220)
225 CHL00131 ycf16 sulfate ABC tra 96.2 0.0036 9.1E-08 39.9 2.8 23 8-30 32-54 (252)
226 COG4618 ArpD ABC-type protease 96.2 0.0036 9.1E-08 39.9 2.8 35 10-44 364-402 (580)
227 cd03244 ABCC_MRP_domain2 Domai 96.2 0.0042 1.1E-07 39.5 3.1 32 8-42 30-61 (221)
228 cd03295 ABC_OpuCA_Osmoprotecti 96.2 0.0037 9.4E-08 39.8 2.9 31 8-41 27-57 (242)
229 cd03300 ABC_PotA_N PotA is an 96.2 0.0042 1.1E-07 39.5 3.1 31 8-41 26-56 (232)
230 cd03298 ABC_ThiQ_thiamine_tran 96.2 0.0039 9.9E-08 39.7 2.9 33 7-42 23-55 (211)
231 PRK10851 sulfate/thiosulfate t 96.2 0.0038 9.7E-08 39.7 2.8 32 8-42 28-59 (352)
232 PRK13632 cbiO cobalt transport 96.2 0.0039 9.9E-08 39.6 2.9 26 8-33 36-61 (273)
233 PRK11331 5-methylcytosine-spec 96.2 0.0035 8.8E-08 40.0 2.6 33 2-35 189-221 (459)
234 PRK13768 GTPase; Provisional 96.2 0.0057 1.4E-07 38.7 3.7 26 9-34 3-28 (253)
235 pfam03029 ATP_bind_1 Conserved 96.2 0.0032 8.2E-08 40.1 2.4 22 14-35 2-23 (234)
236 PRK13640 cbiO cobalt transport 96.2 0.0039 9.9E-08 39.7 2.8 97 94-210 175-280 (283)
237 cd03254 ABCC_Glucan_exporter_l 96.2 0.0042 1.1E-07 39.4 3.0 31 8-41 29-59 (229)
238 PRK06761 hypothetical protein; 96.2 0.0042 1.1E-07 39.4 3.0 191 10-209 4-274 (281)
239 PRK10771 thiQ thiamine transpo 96.2 0.0043 1.1E-07 39.4 3.0 30 8-40 25-54 (233)
240 cd03288 ABCC_SUR2 The SUR doma 96.2 0.0044 1.1E-07 39.3 3.0 30 9-41 48-77 (257)
241 PRK13540 cytochrome c biogenes 96.2 0.0045 1.2E-07 39.2 3.1 26 8-33 27-52 (200)
242 COG1136 SalX ABC-type antimicr 96.2 0.0046 1.2E-07 39.2 3.1 30 9-41 32-61 (226)
243 TIGR00972 3a0107s01c2 phosphat 96.2 0.0047 1.2E-07 39.2 3.1 23 7-29 26-48 (248)
244 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0024 6.2E-08 40.9 1.6 41 5-45 75-116 (361)
245 cd03236 ABC_RNaseL_inhibitor_d 96.1 0.0061 1.6E-07 38.5 3.7 34 4-40 22-55 (255)
246 TIGR02769 nickel_nikE nickel i 96.1 0.0038 9.7E-08 39.7 2.6 33 6-41 36-68 (267)
247 COG0466 Lon ATP-dependent Lon 96.1 0.0076 1.9E-07 37.9 4.1 33 5-37 347-379 (782)
248 TIGR03015 pepcterm_ATPase puta 96.1 0.0087 2.2E-07 37.6 4.4 43 7-49 42-94 (269)
249 cd03225 ABC_cobalt_CbiO_domain 96.1 0.003 7.8E-08 40.3 2.1 31 9-42 28-58 (211)
250 cd03252 ABCC_Hemolysin The ABC 96.1 0.0045 1.1E-07 39.3 2.9 25 8-32 28-52 (237)
251 PRK13631 cbiO cobalt transport 96.1 0.0049 1.2E-07 39.1 3.1 103 94-211 207-317 (320)
252 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.0061 1.6E-07 38.5 3.5 26 9-34 35-60 (207)
253 cd03258 ABC_MetN_methionine_tr 96.1 0.0041 1E-07 39.5 2.6 30 8-40 31-60 (233)
254 PRK13646 cbiO cobalt transport 96.1 0.0049 1.2E-07 39.1 3.0 101 94-211 176-284 (286)
255 cd03228 ABCC_MRP_Like The MRP 96.1 0.0055 1.4E-07 38.8 3.3 31 7-40 27-57 (171)
256 PRK13644 cbiO cobalt transport 96.1 0.0049 1.3E-07 39.0 3.0 26 7-32 27-52 (274)
257 COG1123 ATPase components of v 96.1 0.0051 1.3E-07 39.0 3.1 26 10-35 37-62 (539)
258 PRK05800 cobU adenosylcobinami 96.1 0.051 1.3E-06 33.0 8.2 36 8-43 1-38 (170)
259 COG1116 TauB ABC-type nitrate/ 96.1 0.0052 1.3E-07 38.9 3.1 31 8-41 29-59 (248)
260 cd03223 ABCD_peroxisomal_ALDP 96.1 0.0054 1.4E-07 38.8 3.1 33 8-43 27-59 (166)
261 COG3172 NadR Predicted ATPase/ 96.1 0.0056 1.4E-07 38.7 3.2 36 10-47 10-45 (187)
262 cd03231 ABC_CcmA_heme_exporter 96.0 0.0056 1.4E-07 38.7 3.1 31 8-41 26-56 (201)
263 PRK09452 potA putrescine/sperm 96.0 0.005 1.3E-07 39.0 2.9 32 8-42 43-74 (378)
264 KOG0733 consensus 96.0 0.0062 1.6E-07 38.4 3.3 50 11-67 226-275 (802)
265 PRK13637 cbiO cobalt transport 96.0 0.0044 1.1E-07 39.4 2.6 101 94-213 175-284 (287)
266 TIGR03258 PhnT 2-aminoethylpho 96.0 0.005 1.3E-07 39.0 2.9 24 9-32 32-55 (362)
267 cd03289 ABCC_CFTR2 The CFTR su 96.0 0.0061 1.6E-07 38.5 3.3 26 8-33 30-55 (275)
268 PRK11650 ugpC glycerol-3-phosp 96.0 0.005 1.3E-07 39.0 2.8 32 8-42 30-61 (358)
269 cd03290 ABCC_SUR1_N The SUR do 96.0 0.0056 1.4E-07 38.7 3.0 32 8-42 27-58 (218)
270 TIGR01978 sufC FeS assembly AT 96.0 0.004 1E-07 39.6 2.2 80 8-105 26-105 (248)
271 PRK00440 rfc replication facto 96.0 0.0054 1.4E-07 38.8 2.8 25 11-35 40-64 (318)
272 cd03247 ABCC_cytochrome_bd The 96.0 0.0059 1.5E-07 38.6 3.0 32 8-42 28-59 (178)
273 PRK11831 putative ABC transpor 96.0 0.0059 1.5E-07 38.6 2.9 31 8-41 34-64 (269)
274 PRK11124 artP arginine transpo 95.9 0.0067 1.7E-07 38.2 3.1 31 8-41 28-58 (242)
275 PRK13651 cobalt transporter AT 95.9 0.0066 1.7E-07 38.3 3.1 102 94-215 192-301 (304)
276 PRK11308 dppF dipeptide transp 95.9 0.0049 1.3E-07 39.0 2.4 22 8-29 41-62 (327)
277 PRK11701 phnK phosphonates tra 95.9 0.0067 1.7E-07 38.2 3.1 31 9-42 33-63 (258)
278 PRK10744 phosphate transporter 95.9 0.0068 1.7E-07 38.2 3.1 27 7-33 35-61 (257)
279 PRK09580 sufC cysteine desulfu 95.9 0.0068 1.7E-07 38.2 3.1 32 8-40 27-58 (248)
280 COG1126 GlnQ ABC-type polar am 95.9 0.0066 1.7E-07 38.3 3.0 31 7-40 27-57 (240)
281 KOG0058 consensus 95.9 0.0082 2.1E-07 37.7 3.4 24 10-33 496-519 (716)
282 PRK11248 tauB taurine transpor 95.9 0.0063 1.6E-07 38.4 2.8 32 8-42 27-58 (255)
283 PRK10908 cell division protein 95.9 0.0062 1.6E-07 38.5 2.7 31 8-41 28-58 (222)
284 PRK13764 ATPase; Provisional 95.9 0.0071 1.8E-07 38.1 3.0 24 10-33 261-284 (605)
285 PRK13645 cbiO cobalt transport 95.9 0.0065 1.6E-07 38.3 2.8 99 95-210 182-288 (289)
286 COG4987 CydC ABC-type transpor 95.9 0.0072 1.8E-07 38.0 3.0 26 9-34 365-390 (573)
287 TIGR00630 uvra excinuclease AB 95.9 0.0043 1.1E-07 39.4 1.9 38 12-49 669-711 (956)
288 COG4240 Predicted kinase [Gene 95.9 0.0052 1.3E-07 38.9 2.3 31 6-36 48-78 (300)
289 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.0068 1.7E-07 38.2 2.9 30 9-41 26-55 (246)
290 cd01882 BMS1 Bms1. Bms1 is an 95.8 0.01 2.6E-07 37.2 3.7 39 6-44 37-84 (225)
291 PRK10575 iron-hydroxamate tran 95.8 0.0077 2E-07 37.9 3.1 31 8-41 37-67 (265)
292 PRK05563 DNA polymerase III su 95.8 0.0061 1.6E-07 38.5 2.5 29 12-40 42-70 (541)
293 TIGR03265 PhnT2 putative 2-ami 95.8 0.0071 1.8E-07 38.1 2.8 32 8-42 30-61 (353)
294 PRK11000 maltose/maltodextrin 95.8 0.0073 1.9E-07 38.0 2.8 32 8-42 29-60 (369)
295 pfam05729 NACHT NACHT domain. 95.8 0.0096 2.5E-07 37.3 3.4 23 10-32 2-24 (165)
296 pfam07728 AAA_5 AAA domain (dy 95.8 0.0085 2.2E-07 37.6 3.1 26 12-37 3-29 (139)
297 TIGR01186 proV glycine betaine 95.8 0.0076 1.9E-07 37.9 2.9 31 9-39 20-54 (372)
298 PRK11247 ssuB aliphatic sulfon 95.8 0.0073 1.9E-07 38.0 2.7 32 8-42 38-69 (257)
299 pfam07693 KAP_NTPase KAP famil 95.8 0.011 2.9E-07 36.9 3.7 28 6-33 18-45 (301)
300 PRK05201 hslU ATP-dependent pr 95.7 0.0086 2.2E-07 37.6 3.0 29 11-39 53-81 (442)
301 PRK07133 DNA polymerase III su 95.7 0.0084 2.1E-07 37.7 2.9 26 11-36 43-68 (718)
302 PRK13643 cbiO cobalt transport 95.7 0.0082 2.1E-07 37.7 2.8 100 94-211 175-282 (288)
303 PRK13695 putative NTPase; Prov 95.7 0.006 1.5E-07 38.5 2.1 27 7-33 2-28 (174)
304 pfam06068 TIP49 TIP49 C-termin 95.7 0.01 2.6E-07 37.2 3.2 39 3-43 47-89 (395)
305 COG3839 MalK ABC-type sugar tr 95.7 0.0095 2.4E-07 37.3 3.1 100 10-121 31-146 (338)
306 PRK13649 cbiO cobalt transport 95.7 0.0086 2.2E-07 37.6 2.8 25 8-32 33-57 (280)
307 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.028 7E-07 34.6 5.4 29 9-40 26-54 (157)
308 PRK13641 cbiO cobalt transport 95.7 0.0077 2E-07 37.9 2.5 99 94-211 176-282 (286)
309 pfam06309 Torsin Torsin. This 95.7 0.015 3.9E-07 36.1 4.0 30 3-32 48-77 (127)
310 PRK13639 cbiO cobalt transport 95.7 0.0093 2.4E-07 37.4 2.9 99 94-211 168-274 (275)
311 PRK13647 cbiO cobalt transport 95.7 0.0092 2.3E-07 37.4 2.9 25 8-32 31-55 (273)
312 PRK13547 hmuV hemin importer A 95.7 0.009 2.3E-07 37.5 2.8 26 8-33 27-52 (273)
313 PRK06645 DNA polymerase III su 95.6 0.008 2E-07 37.8 2.5 27 11-37 46-72 (507)
314 cd03217 ABC_FeS_Assembly ABC-t 95.6 0.0097 2.5E-07 37.3 2.9 34 8-42 26-59 (200)
315 TIGR00635 ruvB Holliday juncti 95.6 0.0088 2.2E-07 37.5 2.7 34 12-45 34-69 (305)
316 pfam02367 UPF0079 Uncharacteri 95.6 0.011 2.9E-07 36.8 3.2 32 4-35 11-42 (123)
317 cd03222 ABC_RNaseL_inhibitor T 95.6 0.011 2.9E-07 36.9 3.1 34 6-42 23-56 (177)
318 TIGR03269 met_CoM_red_A2 methy 95.6 0.0089 2.3E-07 37.5 2.6 23 8-30 26-48 (520)
319 PRK13538 cytochrome c biogenes 95.6 0.011 2.9E-07 36.9 3.1 32 8-42 27-58 (204)
320 PRK10418 nikD nickel transport 95.6 0.0097 2.5E-07 37.3 2.7 27 7-33 28-54 (254)
321 PRK13652 cbiO cobalt transport 95.6 0.01 2.6E-07 37.2 2.8 25 8-32 30-54 (277)
322 pfam07724 AAA_2 AAA domain (Cd 95.6 0.16 4E-06 30.1 8.9 117 10-148 5-132 (168)
323 PRK11022 dppD dipeptide transp 95.5 0.011 2.8E-07 37.0 2.9 28 8-35 33-60 (327)
324 pfam07726 AAA_3 ATPase family 95.5 0.016 4E-07 36.0 3.6 28 11-38 2-29 (131)
325 COG1122 CbiO ABC-type cobalt t 95.5 0.011 2.7E-07 37.0 2.8 25 8-32 30-54 (235)
326 PRK13549 xylose transporter AT 95.5 0.012 3E-07 36.8 2.9 25 8-32 31-55 (513)
327 PRK11607 potG putrescine trans 95.5 0.011 2.7E-07 37.0 2.7 32 8-42 45-76 (377)
328 PRK10636 putative ABC transpor 95.5 0.01 2.6E-07 37.1 2.6 24 9-32 28-51 (638)
329 PRK11147 ABC transporter ATPas 95.5 0.011 2.8E-07 36.9 2.8 25 8-32 29-53 (632)
330 cd03240 ABC_Rad50 The catalyti 95.5 0.013 3.3E-07 36.5 3.1 25 8-32 22-46 (204)
331 TIGR02982 heterocyst_DevA ABC 95.5 0.012 3E-07 36.8 2.8 20 10-29 33-52 (220)
332 COG3640 CooC CO dehydrogenase 95.5 0.015 3.7E-07 36.2 3.3 24 9-32 1-24 (255)
333 pfam01591 6PF2K 6-phosphofruct 95.5 0.018 4.7E-07 35.6 3.8 43 3-45 8-55 (223)
334 PRK09473 oppD oligopeptide tra 95.4 0.011 2.8E-07 36.9 2.6 26 8-33 42-67 (330)
335 COG0464 SpoVK ATPases of the A 95.4 0.012 3.2E-07 36.6 2.9 31 10-40 278-308 (494)
336 PRK06305 DNA polymerase III su 95.4 0.011 2.8E-07 37.0 2.6 26 12-37 43-68 (462)
337 COG3840 ThiQ ABC-type thiamine 95.4 0.013 3.3E-07 36.5 3.0 30 9-41 26-55 (231)
338 PRK09984 phosphonate/organopho 95.4 0.013 3.4E-07 36.5 3.0 25 8-32 30-54 (262)
339 COG1224 TIP49 DNA helicase TIP 95.4 0.015 3.8E-07 36.2 3.3 36 10-45 67-106 (450)
340 PRK11144 modC molybdate transp 95.4 0.013 3.4E-07 36.5 3.0 23 8-30 24-46 (352)
341 cd03233 ABC_PDR_domain1 The pl 95.4 0.014 3.5E-07 36.4 3.0 26 8-33 33-58 (202)
342 PRK13539 cytochrome c biogenes 95.4 0.015 3.8E-07 36.2 3.2 32 8-42 28-59 (206)
343 PRK13636 cbiO cobalt transport 95.4 0.014 3.5E-07 36.4 3.0 103 95-215 173-284 (285)
344 PRK10938 putative molybdenum t 95.4 0.013 3.3E-07 36.6 2.8 25 9-33 30-54 (490)
345 cd03235 ABC_Metallic_Cations A 95.4 0.015 3.8E-07 36.2 3.1 33 7-42 24-56 (213)
346 PRK11147 ABC transporter ATPas 95.4 0.014 3.4E-07 36.4 2.9 25 8-32 345-369 (632)
347 PRK11288 araG L-arabinose tran 95.3 0.0071 1.8E-07 38.1 1.4 32 7-41 29-60 (501)
348 TIGR03269 met_CoM_red_A2 methy 95.3 0.015 3.9E-07 36.1 3.0 31 9-42 311-341 (520)
349 cd03214 ABC_Iron-Siderophores_ 95.3 0.016 4E-07 36.0 3.1 31 8-41 25-55 (180)
350 cd03213 ABCG_EPDR ABCG transpo 95.3 0.015 3.7E-07 36.2 2.9 22 9-30 36-57 (194)
351 cd03259 ABC_Carb_Solutes_like 95.3 0.015 3.8E-07 36.1 3.0 32 8-42 26-57 (213)
352 COG4136 ABC-type uncharacteriz 95.3 0.012 3.1E-07 36.7 2.5 36 7-42 27-62 (213)
353 COG0714 MoxR-like ATPases [Gen 95.3 0.021 5.3E-07 35.3 3.7 29 10-38 45-73 (329)
354 PRK10261 glutathione transport 95.3 0.014 3.5E-07 36.4 2.7 26 8-33 42-67 (623)
355 PRK09544 znuC high-affinity zi 95.3 0.017 4.2E-07 35.9 3.1 32 8-42 30-61 (251)
356 PRK10938 putative molybdenum t 95.3 0.015 3.9E-07 36.1 2.9 23 8-30 286-308 (490)
357 PRK06674 DNA polymerase III su 95.3 0.013 3.3E-07 36.6 2.5 29 12-40 42-70 (563)
358 PRK13544 consensus 95.3 0.017 4.3E-07 35.8 3.1 31 7-40 26-56 (208)
359 PRK11819 putative ABC transpor 95.3 0.015 3.9E-07 36.1 2.9 23 8-30 33-55 (556)
360 PRK06647 DNA polymerase III su 95.3 0.013 3.3E-07 36.5 2.5 29 12-40 42-70 (560)
361 PRK13548 hmuV hemin importer A 95.2 0.017 4.3E-07 35.8 3.1 32 8-42 28-59 (257)
362 cd03232 ABC_PDR_domain2 The pl 95.2 0.017 4.3E-07 35.8 3.0 23 8-30 33-55 (192)
363 PRK11153 metN DL-methionine tr 95.2 0.016 4.1E-07 36.0 2.9 32 8-42 31-62 (343)
364 PRK11819 putative ABC transpor 95.2 0.018 4.5E-07 35.7 3.1 31 8-41 350-380 (556)
365 TIGR03499 FlhF flagellar biosy 95.2 0.019 4.7E-07 35.6 3.2 24 10-33 196-219 (282)
366 PRK05342 clpX ATP-dependent pr 95.2 0.026 6.6E-07 34.7 3.9 30 10-39 111-140 (411)
367 TIGR00176 mobB molybdopterin-g 95.2 0.015 3.8E-07 36.2 2.6 24 10-33 1-24 (165)
368 PRK00080 ruvB Holliday junctio 95.2 0.025 6.4E-07 34.8 3.8 29 10-38 53-81 (328)
369 PRK05896 DNA polymerase III su 95.1 0.017 4.3E-07 35.8 2.8 28 12-39 42-69 (613)
370 pfam00931 NB-ARC NB-ARC domain 95.1 0.017 4.3E-07 35.8 2.7 25 8-32 19-43 (285)
371 PTZ00265 multidrug resistance 95.1 0.017 4.4E-07 35.8 2.8 32 9-40 412-447 (1467)
372 PRK13549 xylose transporter AT 95.1 0.018 4.7E-07 35.6 2.9 26 7-32 287-312 (513)
373 PTZ00265 multidrug resistance 95.1 0.017 4.4E-07 35.8 2.7 25 10-34 1197-1221(1467)
374 TIGR01277 thiQ thiamine ABC tr 95.1 0.018 4.5E-07 35.7 2.8 30 9-41 25-54 (213)
375 TIGR02204 MsbA_rel ABC transpo 95.1 0.017 4.3E-07 35.9 2.7 25 9-33 367-391 (576)
376 PRK11231 fecE iron-dicitrate t 95.1 0.02 5E-07 35.4 3.0 30 8-40 28-57 (255)
377 TIGR02673 FtsE cell division A 95.1 0.015 3.8E-07 36.2 2.4 21 13-33 33-53 (215)
378 PRK08451 DNA polymerase III su 95.1 0.017 4.4E-07 35.8 2.6 25 12-36 40-64 (523)
379 cd03216 ABC_Carb_Monos_I This 95.1 0.022 5.6E-07 35.1 3.2 33 7-42 25-57 (163)
380 PRK03695 vitamin B12-transport 95.0 0.019 5E-07 35.5 2.9 23 9-31 24-46 (245)
381 PRK10982 galactose/methyl gala 95.0 0.021 5.3E-07 35.3 3.0 31 8-41 24-54 (491)
382 PRK10762 D-ribose transporter 95.0 0.02 5.1E-07 35.4 3.0 30 9-41 31-60 (501)
383 PRK13543 cytochrome c biogenes 95.0 0.022 5.6E-07 35.2 3.1 31 8-41 37-67 (214)
384 COG0802 Predicted ATPase or ki 95.0 0.029 7.4E-07 34.4 3.7 30 5-34 22-51 (149)
385 PRK10535 macrolide transporter 95.0 0.02 5.2E-07 35.4 2.9 30 8-40 34-63 (648)
386 PRK13546 teichoic acids export 95.0 0.021 5.3E-07 35.3 3.0 33 8-43 50-82 (264)
387 PRK07270 DNA polymerase III su 95.0 0.017 4.4E-07 35.8 2.5 29 12-40 41-69 (557)
388 PRK07994 DNA polymerase III su 95.0 0.02 5.2E-07 35.4 2.8 25 12-36 42-66 (643)
389 PRK10895 putative ABC transpor 95.0 0.023 5.9E-07 35.0 3.1 32 8-42 29-60 (241)
390 PRK10253 iron-enterobactin tra 95.0 0.018 4.6E-07 35.7 2.5 30 8-40 33-62 (265)
391 cd03219 ABC_Mj1267_LivG_branch 94.9 0.024 6.2E-07 34.9 3.2 31 9-42 27-57 (236)
392 PRK11614 livF leucine/isoleuci 94.9 0.023 5.9E-07 35.0 3.1 32 8-42 31-62 (237)
393 KOG0743 consensus 94.9 0.021 5.4E-07 35.3 2.8 26 13-38 240-265 (457)
394 TIGR02322 phosphon_PhnN phosph 94.9 0.34 8.7E-06 28.0 12.6 165 10-212 3-182 (183)
395 pfam00448 SRP54 SRP54-type pro 94.9 0.032 8.2E-07 34.2 3.7 42 8-49 1-46 (196)
396 PRK08691 DNA polymerase III su 94.9 0.022 5.6E-07 35.1 2.9 26 11-36 41-66 (704)
397 pfam01745 IPT Isopentenyl tran 94.9 0.039 9.8E-07 33.7 4.1 129 10-156 3-146 (232)
398 TIGR03410 urea_trans_UrtE urea 94.9 0.011 2.9E-07 36.9 1.3 32 9-43 27-58 (230)
399 PRK11300 livG leucine/isoleuci 94.9 0.025 6.4E-07 34.8 3.1 31 9-42 32-62 (255)
400 cd03215 ABC_Carb_Monos_II This 94.8 0.016 4.2E-07 35.9 2.1 32 8-42 26-57 (182)
401 PRK05703 flhF flagellar biosyn 94.8 0.021 5.4E-07 35.2 2.6 43 9-51 211-259 (412)
402 pfam03266 DUF265 Protein of un 94.8 0.012 3.1E-07 36.7 1.3 24 11-34 2-25 (168)
403 pfam00308 Bac_DnaA Bacterial d 94.8 0.37 9.4E-06 27.8 11.7 37 11-47 37-80 (219)
404 KOG0730 consensus 94.8 0.023 5.9E-07 35.0 2.7 29 11-39 471-499 (693)
405 PRK13638 cbiO cobalt transport 94.8 0.027 6.8E-07 34.7 3.0 32 8-42 27-58 (271)
406 KOG4238 consensus 94.8 0.078 2E-06 31.9 5.4 165 9-213 51-221 (627)
407 TIGR00960 3a0501s02 Type II (G 94.8 0.017 4.3E-07 35.8 2.0 21 11-31 32-52 (216)
408 PRK00349 uvrA excinuclease ABC 94.8 0.021 5.3E-07 35.3 2.4 32 10-41 28-60 (944)
409 cd03238 ABC_UvrA The excision 94.8 0.03 7.7E-07 34.3 3.3 23 7-29 20-42 (176)
410 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.027 6.9E-07 34.6 3.0 31 8-41 26-56 (144)
411 cd03224 ABC_TM1139_LivF_branch 94.7 0.029 7.3E-07 34.5 3.1 33 7-42 25-57 (222)
412 cd03271 ABC_UvrA_II The excisi 94.7 0.03 7.7E-07 34.3 3.2 20 8-27 21-40 (261)
413 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.7 0.028 7.2E-07 34.5 3.0 32 8-42 48-79 (224)
414 PRK10636 putative ABC transpor 94.7 0.023 5.8E-07 35.1 2.5 26 8-33 338-363 (638)
415 TIGR02881 spore_V_K stage V sp 94.6 0.022 5.6E-07 35.2 2.3 28 13-40 47-75 (261)
416 KOG2028 consensus 94.6 0.0092 2.3E-07 37.4 0.4 30 11-40 165-197 (554)
417 PRK09700 D-allose transporter 94.6 0.029 7.5E-07 34.4 2.9 31 8-41 31-61 (510)
418 COG1118 CysA ABC-type sulfate/ 94.6 0.031 7.8E-07 34.3 3.0 28 10-40 30-57 (345)
419 pfam03308 ArgK ArgK protein. T 94.6 0.044 1.1E-06 33.4 3.8 28 5-32 26-53 (267)
420 PRK13409 putative ATPase RIL; 94.6 0.031 8E-07 34.2 3.0 28 6-33 97-124 (590)
421 PRK06731 flhF flagellar biosyn 94.5 0.042 1.1E-06 33.5 3.5 47 5-51 72-122 (270)
422 PRK13541 cytochrome c biogenes 94.5 0.034 8.6E-07 34.1 3.0 33 7-42 25-57 (195)
423 COG1219 ClpX ATP-dependent pro 94.5 0.043 1.1E-06 33.4 3.6 29 10-38 99-127 (408)
424 cd03263 ABC_subfamily_A The AB 94.5 0.035 8.8E-07 34.0 3.0 32 8-42 28-59 (220)
425 KOG1384 consensus 94.5 0.049 1.3E-06 33.1 3.8 53 7-59 6-58 (348)
426 PRK06620 hypothetical protein; 94.5 0.053 1.3E-06 32.9 3.9 29 10-38 46-74 (214)
427 PRK10261 glutathione transport 94.5 0.034 8.8E-07 34.0 3.0 25 8-32 350-374 (623)
428 cd03115 SRP The signal recogni 94.4 0.045 1.1E-06 33.3 3.5 40 10-49 2-45 (173)
429 KOG0735 consensus 94.4 0.039 9.8E-07 33.7 3.1 25 10-34 433-457 (952)
430 COG1855 ATPase (PilT family) [ 94.4 0.035 9E-07 33.9 2.9 23 11-33 266-288 (604)
431 KOG0055 consensus 94.4 0.045 1.1E-06 33.3 3.4 39 8-47 379-421 (1228)
432 COG1117 PstB ABC-type phosphat 94.4 0.039 9.9E-07 33.7 3.1 24 7-30 32-55 (253)
433 PRK11288 araG L-arabinose tran 94.4 0.031 7.9E-07 34.3 2.6 32 8-42 279-310 (501)
434 PRK08853 DNA polymerase III su 94.3 0.032 8.1E-07 34.2 2.6 25 12-36 42-66 (717)
435 KOG0731 consensus 94.3 0.035 9E-07 33.9 2.8 28 11-38 347-374 (774)
436 TIGR03411 urea_trans_UrtD urea 94.3 0.042 1.1E-06 33.5 3.2 31 8-41 28-58 (242)
437 PRK09111 DNA polymerase III su 94.3 0.032 8.2E-07 34.2 2.6 24 13-36 50-73 (600)
438 PRK09435 arginine/ornithine tr 94.3 0.052 1.3E-06 32.9 3.6 27 6-32 47-73 (325)
439 PRK10646 putative ATPase; Prov 94.3 0.044 1.1E-06 33.4 3.2 107 5-144 25-133 (153)
440 cd01120 RecA-like_NTPases RecA 94.3 0.046 1.2E-06 33.2 3.3 39 10-48 1-44 (165)
441 KOG0741 consensus 94.3 0.042 1.1E-06 33.4 3.1 92 10-112 540-634 (744)
442 pfam00910 RNA_helicase RNA hel 94.3 0.036 9.3E-07 33.9 2.7 22 12-33 2-23 (105)
443 KOG0057 consensus 94.2 0.026 6.5E-07 34.8 1.9 175 9-208 379-574 (591)
444 KOG0733 consensus 94.2 0.035 9E-07 33.9 2.6 29 11-39 548-576 (802)
445 cd01394 radB RadB. The archaea 94.2 0.37 9.5E-06 27.8 7.9 131 8-139 19-186 (218)
446 pfam03205 MobB Molybdopterin g 94.2 0.052 1.3E-06 32.9 3.5 23 10-32 2-24 (122)
447 PRK10982 galactose/methyl gala 94.2 0.042 1.1E-06 33.5 2.9 24 8-31 274-297 (491)
448 pfam02283 CobU Cobinamide kina 94.2 0.081 2.1E-06 31.8 4.4 116 12-131 2-131 (166)
449 PRK12723 flagellar biosynthesi 94.2 0.054 1.4E-06 32.8 3.4 46 7-52 173-226 (388)
450 COG2255 RuvB Holliday junction 94.1 0.027 6.9E-07 34.6 1.9 46 11-56 55-102 (332)
451 PRK10536 hypothetical protein; 94.1 0.035 8.9E-07 34.0 2.4 28 4-32 71-98 (262)
452 COG2812 DnaX DNA polymerase II 94.1 0.031 7.9E-07 34.3 2.1 29 13-41 43-71 (515)
453 COG1125 OpuBA ABC-type proline 94.1 0.052 1.3E-06 32.9 3.2 48 8-55 27-86 (309)
454 cd03270 ABC_UvrA_I The excisio 94.1 0.046 1.2E-06 33.2 3.0 19 7-25 20-38 (226)
455 COG0444 DppD ABC-type dipeptid 94.1 0.067 1.7E-06 32.3 3.8 34 8-41 31-66 (316)
456 COG1341 Predicted GTPase or GT 94.1 0.074 1.9E-06 32.0 4.0 29 6-34 71-99 (398)
457 PRK12726 flagellar biosynthesi 94.0 0.056 1.4E-06 32.7 3.4 42 10-51 208-253 (407)
458 TIGR02315 ABC_phnC phosphonate 94.0 0.042 1.1E-06 33.5 2.7 21 10-30 30-50 (253)
459 COG4608 AppF ABC-type oligopep 94.0 0.052 1.3E-06 32.9 3.2 27 7-33 38-64 (268)
460 PRK10751 molybdopterin-guanine 94.0 0.058 1.5E-06 32.7 3.4 25 10-34 4-28 (170)
461 COG3638 ABC-type phosphate/pho 94.0 0.05 1.3E-06 33.0 3.0 22 9-30 31-52 (258)
462 COG4181 Predicted ABC-type tra 94.0 0.043 1.1E-06 33.4 2.7 32 9-43 37-68 (228)
463 COG0396 sufC Cysteine desulfur 94.0 0.046 1.2E-06 33.2 2.8 32 7-38 29-60 (251)
464 KOG0707 consensus 94.0 0.084 2.1E-06 31.7 4.1 31 10-40 39-71 (231)
465 PRK09087 hypothetical protein; 94.0 0.076 1.9E-06 31.9 3.9 30 10-39 46-75 (226)
466 KOG1969 consensus 94.0 0.095 2.4E-06 31.4 4.4 43 10-52 328-377 (877)
467 TIGR00150 TIGR00150 conserved 94.0 0.081 2.1E-06 31.8 4.0 103 7-142 27-136 (147)
468 TIGR00630 uvra excinuclease AB 94.0 0.035 9E-07 33.9 2.2 134 10-171 24-170 (956)
469 PRK00635 excinuclease ABC subu 94.0 0.039 9.9E-07 33.7 2.4 34 10-43 963-997 (1809)
470 PRK06872 DNA polymerase III su 94.0 0.044 1.1E-06 33.4 2.6 26 11-36 41-66 (696)
471 cd03267 ABC_NatA_like Similar 94.0 0.05 1.3E-06 33.0 2.9 32 8-42 47-78 (236)
472 PRK10762 D-ribose transporter 93.9 0.05 1.3E-06 33.0 2.9 26 7-32 277-302 (501)
473 cd00544 CobU Adenosylcobinamid 93.9 0.34 8.6E-06 28.1 7.1 34 10-43 1-36 (169)
474 PRK07940 DNA polymerase III su 93.9 0.046 1.2E-06 33.2 2.7 25 13-37 44-68 (395)
475 PRK07003 DNA polymerase III su 93.9 0.046 1.2E-06 33.2 2.6 25 11-35 41-65 (816)
476 PRK05648 DNA polymerase III su 93.8 0.046 1.2E-06 33.3 2.6 24 13-36 43-66 (705)
477 PRK13542 consensus 93.8 0.059 1.5E-06 32.6 3.1 31 8-41 44-74 (224)
478 PRK07764 DNA polymerase III su 93.8 0.053 1.3E-06 32.9 2.9 25 12-36 41-65 (775)
479 KOG0061 consensus 93.8 0.059 1.5E-06 32.6 3.0 26 9-34 57-82 (613)
480 cd03230 ABC_DR_subfamily_A Thi 93.7 0.063 1.6E-06 32.4 3.1 32 8-42 26-57 (173)
481 TIGR01242 26Sp45 26S proteasom 93.7 0.041 1E-06 33.6 2.0 85 11-109 159-253 (364)
482 TIGR02142 modC_ABC molybdate A 93.6 0.056 1.4E-06 32.7 2.7 28 10-40 25-52 (361)
483 PRK09536 btuD corrinoid ABC tr 93.6 0.057 1.5E-06 32.7 2.7 25 8-32 28-52 (409)
484 KOG2170 consensus 93.6 0.085 2.2E-06 31.7 3.6 43 5-47 107-149 (344)
485 PRK12323 DNA polymerase III su 93.6 0.054 1.4E-06 32.8 2.6 27 12-38 42-68 (721)
486 TIGR00174 miaA tRNA delta(2)-i 93.6 0.068 1.7E-06 32.2 3.1 37 10-46 1-39 (307)
487 PRK06995 flhF flagellar biosyn 93.6 0.048 1.2E-06 33.1 2.3 44 9-52 177-226 (404)
488 cd01130 VirB11-like_ATPase Typ 93.6 0.071 1.8E-06 32.1 3.1 26 9-34 26-51 (186)
489 cd03114 ArgK-like The function 93.5 0.059 1.5E-06 32.6 2.7 119 10-140 1-122 (148)
490 COG1120 FepC ABC-type cobalami 93.5 0.071 1.8E-06 32.1 3.1 26 8-33 28-53 (258)
491 COG4167 SapF ABC-type antimicr 93.5 0.064 1.6E-06 32.4 2.8 25 7-31 38-62 (267)
492 KOG0736 consensus 93.5 0.094 2.4E-06 31.4 3.7 32 7-38 430-461 (953)
493 PRK05564 DNA polymerase III su 93.5 0.059 1.5E-06 32.6 2.6 22 12-33 30-51 (313)
494 TIGR02788 VirB11 P-type DNA tr 93.5 0.062 1.6E-06 32.5 2.7 123 5-169 157-301 (328)
495 PRK08770 DNA polymerase III su 93.4 0.057 1.4E-06 32.7 2.5 28 12-39 42-69 (663)
496 KOG2878 consensus 93.4 0.042 1.1E-06 33.5 1.8 29 8-36 31-59 (282)
497 pfam02562 PhoH PhoH-like prote 93.4 0.082 2.1E-06 31.7 3.3 26 6-32 18-43 (205)
498 PRK08058 DNA polymerase III su 93.4 0.074 1.9E-06 32.0 3.0 24 13-36 33-56 (329)
499 COG1763 MobB Molybdopterin-gua 93.4 0.084 2.2E-06 31.7 3.3 28 9-36 3-30 (161)
500 cd04154 Arl2 Arl2 subfamily. 93.3 0.087 2.2E-06 31.6 3.3 28 2-29 8-35 (173)
No 1
>PRK00023 cmk cytidylate kinase; Provisional
Probab=100.00 E-value=0 Score=509.13 Aligned_cols=210 Identities=41% Similarity=0.746 Sum_probs=195.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-------------C
Q ss_conf 558818986668778967899999998178356202899999852321011101465533332101-------------1
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNI-------------V 71 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i-------------~ 71 (217)
|++++||||||||||||||+||.||++|||.|||||+|||++||.+++++++++++....+...++ .
T Consensus 1 m~~~iIIaIDGpagSGKST~ak~lA~~L~~~yldTG~~YRa~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 80 (225)
T PRK00023 1 MMKAPVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALQHGVDLEDEEALVALAAHLDISFENGPDGQEVF 80 (225)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 99897899658986787899999999939887641099999999999848596579999999854982003688763798
Q ss_pred CCCCC-CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 12444-44432012100111122057899998878888763038846206412556630388689984488889999866
Q gi|254780457|r 72 LSNLD-KAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYN 150 (217)
Q Consensus 72 ~~~~~-~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~ 150 (217)
+++.+ +.+||+++|+..||.||++|+||++|+.+||++++. +|+|+|||||||||||||++|||||||+++||+|||.
T Consensus 81 l~~~dv~~~lrs~eI~~~vS~iA~~~~VR~~l~~~Qr~~~~~-~g~V~eGRDIGTvVfPdA~lK~fL~As~~~RA~RR~~ 159 (225)
T PRK00023 81 LNGEDVSDEIRTEEVGNAASKVAAIPEVREALVERQRAFAEA-PGLVMDGRDIGTVVFPDAELKIFLTASAEERAERRYK 159 (225)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHH
T ss_conf 679512798822788888988638788999999999999853-6916742543138806887677786798999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 77652111356999999999856102367578537997399977898989999999999998740
Q gi|254780457|r 151 EMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 151 el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
|+.+.|.+++|++|+++|+.||++|++|++|||++|+||++||||+|+++||+++|+++|++||.
T Consensus 160 el~~~g~~~~~~~v~~~i~~RD~~D~~R~~sPL~~a~DAi~IDts~lti~evv~~i~~~i~~ki~ 224 (225)
T PRK00023 160 ELQAKGISVNFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALIEQKLA 224 (225)
T ss_pred HHHHCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99875887779999999986342023377678754898189989899999999999999999864
No 2
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=100.00 E-value=0 Score=503.61 Aligned_cols=211 Identities=33% Similarity=0.530 Sum_probs=193.7
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-------------
Q ss_conf 5558818986668778967899999998178356202899999852321011101465533332101-------------
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNI------------- 70 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i------------- 70 (217)
+++.+-||||||||||||||+||+||++|||.|||||+|||++||.+++++++++++..+.+...++
T Consensus 280 L~~~~~IIAIDGPAgSGKSTvAK~lA~~L~~~yLDTGamYRAva~~~l~~~i~~~d~~~l~~~l~~~~i~~~~~~~~~~~ 359 (512)
T PRK13477 280 LMKRRPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKLELKPSSGSPQR 359 (512)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCCEE
T ss_conf 15788779986787578789999999981996862449999999999975969768999999987298798318887628
Q ss_pred -CCCCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf -1124444-44320121001111220578999988788887630388462064125566303886899844888899998
Q gi|254780457|r 71 -VLSNLDK-AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRR 148 (217)
Q Consensus 71 -~~~~~~~-~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR 148 (217)
.+++.|. .+||+++|+..||.||++|+||++|+++||+++++ +|+|||||||||||||||++|||||||+++||+||
T Consensus 360 i~lng~dvt~~IRs~eVs~~vS~vA~~p~VR~~l~~~QR~~a~~-~g~V~eGRDIGTVVfPdA~lK~fLtAs~e~RA~RR 438 (512)
T PRK13477 360 VWINGEDVTEAIRSPEVTSSVSAIAAQPCVRQALVKQQQRIGEK-GGLVAEGRDIGTHVFPDAELKIFLTASVEERARRR 438 (512)
T ss_pred EEECCEEHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CCEEEECCCCCCEECCCCCEEEEEECCHHHHHHHH
T ss_conf 99888570665544788999999839798999999999998465-99999799876667789996699989999999999
Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6677652111-356999999999856102367578537997399977898989999999999998740
Q gi|254780457|r 149 YNEMVSRGEK-VDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 149 ~~el~~~g~~-~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
|.|+.++|.+ +++++++++|.+||+.|++|++|||++|+||++||||+||++||+++|++++++|+.
T Consensus 439 ~~el~~~g~~~~s~~~i~~~I~~RD~~D~~R~~sPL~~A~DAi~IDTs~lsieeVv~kI~~l~~~ki~ 506 (512)
T PRK13477 439 ALDLEAQGFPVIDLEELEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRDRIP 506 (512)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999668887899999999998614314477688865898489989999999999999999997530
No 3
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=100.00 E-value=0 Score=501.88 Aligned_cols=208 Identities=38% Similarity=0.638 Sum_probs=193.6
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC---------CCCCCC
Q ss_conf 881-8986668778967899999998178356202899999852321011101465533332101---------112444
Q gi|254780457|r 7 QSI-IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNI---------VLSNLD 76 (217)
Q Consensus 7 k~~-iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i---------~~~~~~ 76 (217)
+++ ||||||||||||||+||.||++|||.|||||+|||++||.+++++++++++..+.+..+++ .+++.|
T Consensus 440 ~~~pIIaIDGpagsGKsT~ak~lA~~l~~~yldTG~~YRa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 519 (662)
T PRK11860 440 ARIPVICIDGPTASGKGTLAAAVAQALGYHYLDSGALYRLTALAALRAGLSLDDEAAIAALARGLPVRFEGDRIWLGGED 519 (662)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEECCCEEEECCCC
T ss_conf 67878996578756868999999999599676253999999999997198976799999999619845347668865846
Q ss_pred -CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf -4443201210011112205789999887888876303884620641255663038868998448888999986677652
Q gi|254780457|r 77 -KAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 77 -~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~ 155 (217)
..+||+++|++.||.||++|+||++|+.+||+|++. +|+|+|||||||||||||++|||||||+++||+|||+|++++
T Consensus 520 v~~~ir~~~v~~~~S~ia~~~~VR~~l~~~Qr~~~~~-~g~V~eGRDigtvVfPdA~~K~fl~As~~~RA~RR~~ql~~~ 598 (662)
T PRK11860 520 VTDAIRTEEAGMNASRVSALPAVRAALLALQHSFRRL-PGLVADGRDMGTVIFPDAALKVFLTASAEARAERRYKQLISK 598 (662)
T ss_pred CHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CCEEEECCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 5576506788899999859699999999999986546-898998998877688899855999899999999999999976
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 111356999999999856102367578537997399977898989999999999998740
Q gi|254780457|r 156 GEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 156 g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
|.+++|++|+++|++||++|++|+++||++|+||++||||+|+++||+++|++++++|+-
T Consensus 599 g~~~~~~~v~~~i~~RD~~D~~R~~sPL~~a~dAi~iDts~l~i~evv~~il~~~~~~~~ 658 (662)
T PRK11860 599 GISANIASLRADLEARDARDANRSVAPLKPAQDALLLDNSDLTIEEAVNQVLDWWQERQP 658 (662)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 998899999999998604224477688755898189979899999999999999995578
No 4
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=496.52 Aligned_cols=209 Identities=42% Similarity=0.732 Sum_probs=194.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----------CCCCCCC
Q ss_conf 881898666877896789999999817835620289999985232101110146553333210----------1112444
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQN----------IVLSNLD 76 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~ 76 (217)
..|+|||||||||||||+||.||++|||.|||||+|||++||.+++.++++.++....++... +++++.|
T Consensus 3 ~~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged 82 (222)
T COG0283 3 AAIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGED 82 (222)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEECCCCEEEECCCC
T ss_conf 76499976887568478999999980986664549999999999980899755999999998588110467158877820
Q ss_pred C-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 4-443201210011112205789999887888876303884620641255663038868998448888999986677652
Q gi|254780457|r 77 K-AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 77 ~-~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~ 155 (217)
. ..||+++|++.||.+|.+|+||++|+..||.|++..+|+|+|||||||||||||++|||||||+|+||+|||+|+..+
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV~PdA~lKiFLtAS~e~RA~RR~~q~~~~ 162 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVVFPDAELKIFLTASPEERAERRYKQLQAK 162 (222)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 03665168999999999725999999999999998438988986687665677898757898688899999999987744
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 111356999999999856102367578537997399977898989999999999998740
Q gi|254780457|r 156 GEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 156 g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
|....|++++.+|++||++|++|+++||+||+||++||||+|+++||+++|+.+++++++
T Consensus 163 g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~~~~~ 222 (222)
T COG0283 163 GFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIRQKLA 222 (222)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 672039999999998623011376788867897489978988299999999999998509
No 5
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=100.00 E-value=0 Score=489.75 Aligned_cols=203 Identities=35% Similarity=0.668 Sum_probs=192.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHH---HHCCCCHHHHHHHHHHHH-------------HC
Q ss_conf 88189866687789678999999981783562028999998523---210111014655333321-------------01
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNI---LDAGISLDDEKMAIKIAQ-------------NI 70 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~---~~~~~~~~~~~~~~~~~~-------------~i 70 (217)
+.|+|||||||||||||+||.||.+|+|.|||||+|||++||.+ +.+++++.+|..+.++.. .+
T Consensus 1 ~~~~IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qrsL~~~~d~~~E~~L~~L~~~~di~f~~~~~~~~v 80 (223)
T TIGR00017 1 MKMIIAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQRSLQNRVDLTDEDALLELISQLDIRFIPTAGEVKV 80 (223)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCEEE
T ss_conf 98637623776465578999999862950214432899999999988740688568488999986326044215775068
Q ss_pred CCCCCCCC-CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 11244444-4320121001111220578999988788887630-388462064125566303886899844888899998
Q gi|254780457|r 71 VLSNLDKA-QLSSNAIANVASQVASIDSVRDALIDIQRSFAQN-KLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRR 148 (217)
Q Consensus 71 ~~~~~~~~-~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR 148 (217)
.+++.|.+ .|+|++|++.||.+|..|.||+.++..||+|+++ .+|+|||||||||||||||+|||||+||+|+||+||
T Consensus 81 ~~nG~DV~~~I~t~~v~~~aS~~A~~~~vR~~~~~~Qq~~~~~sd~g~v~dGRDiGTvVfPnA~~KiFLdAsve~RA~RR 160 (223)
T TIGR00017 81 FLNGEDVSEAIRTQEVANLASKVAAFPKVREILLKRQQKLAKNSDDGIVADGRDIGTVVFPNAELKIFLDASVEERAKRR 160 (223)
T ss_pred EECCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCCCCCEEECCCHHHHHHHH
T ss_conf 87077713220683589999987237779999999999987515897588455237446788751324317878998876
Q ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66776521-11356999999999856102367578537997399977898989999999999
Q gi|254780457|r 149 YNEMVSRG-EKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGL 209 (217)
Q Consensus 149 ~~el~~~g-~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~ 209 (217)
++|+..+| .+++|++++.+|++||..|++|.++||++|+||++||||++|++||++++++.
T Consensus 161 ~~~~~~~g~~~~~~~~L~~eik~RD~~D~~R~~~PL~~A~DA~~ldt~~lsi~~V~~~~l~~ 222 (223)
T TIGR00017 161 YKDLQIKGDNEVNLEELIAEIKRRDDVDSSREVAPLKKAKDALYLDTSNLSIDEVVEKILEK 222 (223)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 99988741501479999999975140133234355545565168854753488999999860
No 6
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=0 Score=481.17 Aligned_cols=202 Identities=28% Similarity=0.433 Sum_probs=176.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHH--------------------------
Q ss_conf 881898666877896789999999817835620289999985232101110146--------------------------
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE-------------------------- 60 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~-------------------------- 60 (217)
-.+||||||||||||||+||.||++|||.|||||+|||++||.+++.+..+..+
T Consensus 33 ~~iIIAIDGPAGSGKSTVAk~lA~~LG~~yLDTGAmYRaval~aLr~~~~l~~e~~~~~~d~d~a~~~a~~~~a~~ld~~ 112 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTS 112 (863)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 98899986898678899999999982995887488999999999764112221124566540123322101211233201
Q ss_pred ---------------HHHHHHH---------HHCCCCCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ---------------5533332---------1011124444-44320121001111220578999988788887630388
Q gi|254780457|r 61 ---------------KMAIKIA---------QNIVLSNLDK-AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLG 115 (217)
Q Consensus 61 ---------------~~~~~~~---------~~i~~~~~~~-~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g 115 (217)
.....+. ..+++++.|. ..||+++|+..||.+|++|.||.+|+.+||+++.. +|
T Consensus 113 ~~~~~~~~~v~L~de~~~~~~~~~~~i~~~~~~v~lngedVt~~IRt~eV~~~AS~VAa~p~VR~aLv~~QR~~a~~-~G 191 (863)
T PRK12269 113 YAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCG-AR 191 (863)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CC
T ss_conf 25532222200021123322221134222355266077503555543888877777755699999999999988547-99
Q ss_pred EEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
Q ss_conf 46206412556630388689984488889999866776521113569999999998561023675785379973999778
Q gi|254780457|r 116 VILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTS 195 (217)
Q Consensus 116 ~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs 195 (217)
+|+|||||||||||||++|||||||+++||+|||.|+.. ++++++++++|++||++|++|++|||+||+||++||||
T Consensus 192 vV~DGRDIGTVVfPdA~lKIFLTAS~e~RA~RR~~Q~~~---k~sleel~~dI~~RD~rDs~R~vAPLk~A~DAvlIDTS 268 (863)
T PRK12269 192 VVCEGRDLTTVVFVDADLKCYLDASIEARVARRWAQGTS---RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTS 268 (863)
T ss_pred EEEECCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
T ss_conf 688668786556899987599979989999999863114---58999999999987322154765788627862899789
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 98989999999999998
Q gi|254780457|r 196 EMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 196 ~lsi~ev~~~i~~~I~~ 212 (217)
+||++||+++|+..+..
T Consensus 269 ~LTIeEVvEKIl~~~~~ 285 (863)
T PRK12269 269 CLTIEEVCERIAREAHR 285 (863)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 99299999999998755
No 7
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=100.00 E-value=0 Score=468.36 Aligned_cols=203 Identities=35% Similarity=0.535 Sum_probs=180.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHH--------HH-----------
Q ss_conf 88189866687789678999999981783562028999998523210111014655333--------32-----------
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIK--------IA----------- 67 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~--------~~----------- 67 (217)
..+||||||||||||||+||.||++|||.|||||+|||++||.+++++++++++..... +.
T Consensus 3 ~~iiIAIDGPagsGKSTvak~lA~~Lg~~yLDTGamYRava~~~l~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (714)
T PRK09518 3 GMIIVAIDGPAGVGKSSVSRALAQYFGYAYLDTGAMYRACAWWCLKQGIDLDAETVDERSVTEAVGEFFSGDHFDISVDP 82 (714)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 98899977898658999999999994991887029999999999980989640456789999889876216863661178
Q ss_pred --HHCCCCCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCEEEECCCHHHHHHCCCCEEEEEECCHH
Q ss_conf --1011124444-44320121001111220578999988788887630--388462064125566303886899844888
Q gi|254780457|r 68 --QNIVLSNLDK-AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQN--KLGVILDGRDIGTIIFPDARIKFYVTASLD 142 (217)
Q Consensus 68 --~~i~~~~~~~-~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~--~~g~V~EGRDigTvVfPdA~~KifL~As~e 142 (217)
..+.+++.|. .+||+++|+..||.||++|+||++|+.+||+++.. .+|+|||||||||||||||++|||||||++
T Consensus 83 ~~~~v~l~g~dVt~~IR~~eV~~~vS~VA~~p~VR~~L~~~QR~~~~~~~~~giV~eGRDIGTVVfPdA~~KifLtAs~e 162 (714)
T PRK09518 83 DSPEVFADDEDISEEIRSPEVTSHVSAVANIIPVRNVLIAAQRALIAREASADIVAEGRDITTVVAPDAEVKIFLTASEE 162 (714)
T ss_pred CCCEEEECCEECHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCEEEEEECCHH
T ss_conf 87579989988367553368899999884979999999999999997089987798668765367589985799979989
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899998667765211135699999999985610236757853799739997789898999999999999874
Q gi|254780457|r 143 IRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 143 ~RA~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
+||+|||.|+... .++.+++++..||+.|+ |.++||++|+||++||||+|+++||++.|+++|+...
T Consensus 163 ~RA~RR~~q~~~~----~~~~~~~~v~~RD~~DS-r~~spl~~A~da~~iDss~l~~eevvd~i~~lv~~~~ 229 (714)
T PRK09518 163 VRAARRSGQAVSG----VGAAVLEDVAARDEADS-KVTSFLSAAEGVTTLDTSDLDFAETLDLLIGLIEDAI 229 (714)
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 9998877644322----06789999986413203-2357653589808986898979999999999998754
No 8
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=100.00 E-value=0 Score=376.56 Aligned_cols=147 Identities=44% Similarity=0.757 Sum_probs=143.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
Q ss_conf 89866687789678999999981783562028999998523210111014655333321011124444443201210011
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVA 89 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~ 89 (217)
||||||||||||||+||.||++|||.||||| +||+++|+..+
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l~~~~ldtG--------------------------------------~ir~~ev~~~~ 42 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG--------------------------------------GIRTEEVGKLA 42 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEECCC--------------------------------------CCCCHHHHHHH
T ss_conf 9888689978989999999999099077665--------------------------------------42548998999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 11220578999988788887630388462064125566303886899844888899998667765211135699999999
Q gi|254780457|r 90 SQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLR 169 (217)
Q Consensus 90 S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i~ 169 (217)
|.+|++|+||++|+.+||+++++ +|+|+|||||||+|||||++||||+||+++||+|||.|+.++|++++|++|+++|+
T Consensus 43 s~ia~~~~VR~~l~~~Qr~~~~~-~~~V~eGRDigtvV~P~A~lKifL~As~e~RA~RR~~e~~~~~~~~~~~~v~~~i~ 121 (147)
T cd02020 43 SEVAAIPEVRKALDERQRELAKK-PGIVLEGRDIGTVVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEII 121 (147)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHC-CCEEEECCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99819788999999999999766-99689713101024467476777758989999999999997577889999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCEEEEECC
Q ss_conf 98561023675785379973999778
Q gi|254780457|r 170 NRDNQDRNRSYCPLVRDKDAYFFDTS 195 (217)
Q Consensus 170 ~RD~~D~~R~~sPL~~a~DAi~IDTs 195 (217)
+||+.|++|+++||++++||++||||
T Consensus 122 ~RD~~D~~R~~sPL~~a~dai~IDTs 147 (147)
T cd02020 122 ERDERDSTRYVAPLKLAEDAIVIDTS 147 (147)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEECC
T ss_conf 87266557566887789998887193
No 9
>pfam02224 Cytidylate_kin Cytidylate kinase. Cytidylate kinase EC:2.7.4.14 catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP.
Probab=100.00 E-value=0 Score=322.84 Aligned_cols=140 Identities=36% Similarity=0.669 Sum_probs=133.6
Q ss_pred HHCCCCCCCCC-CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 10111244444-43201210011112205789999887888876303884620641255663038868998448888999
Q gi|254780457|r 68 QNIVLSNLDKA-QLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRAR 146 (217)
Q Consensus 68 ~~i~~~~~~~~-~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~ 146 (217)
..+.+++.+.+ +||+++|+..||.||++|.||++|+.+||+++++ +|+|+|||||||||||||++|||||||+++||+
T Consensus 18 ~~v~~~g~dvt~~iRs~~V~~~vS~iA~~~~VR~~l~~~Qr~~~~~-~g~V~dGRDIgTvVfPdA~lK~fL~As~~~RA~ 96 (158)
T pfam02224 18 PLVFLNGEDVSEEIRTQEVANAASEVAAIPAVRAILVKLQRQLAKN-GNIVMEGRDIGTVVFPDAEVKIFLTASPEERAK 96 (158)
T ss_pred CEEEECCEEHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CCEEEECCCCCEEECCCCCHHHEEECCHHHHHH
T ss_conf 8899999681487666789999999849899999999999999657-996997898662763786812213688899999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 98667765211135699999999985610236757853799739997789898999999999
Q gi|254780457|r 147 RRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKG 208 (217)
Q Consensus 147 RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~ 208 (217)
|||.|+...|.+++|++++++|.+||..|++|++|||++|+||++||||+|+++||+++|++
T Consensus 97 RR~~el~~~~~~~~~~~v~~~i~~RD~~D~~R~~sPL~~a~DAi~IDts~l~i~evv~~il~ 158 (158)
T pfam02224 97 RRYKQLQAKGSAVDLEELLAEIKRRDKRDSERAVGPLKPAEDALYIDTSDLTIEEVVEKILE 158 (158)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf 99999987477666999999998754102157778873389848998989999999999859
No 10
>PRK04182 cytidylate kinase; Provisional
Probab=100.00 E-value=2.6e-37 Score=243.79 Aligned_cols=171 Identities=24% Similarity=0.336 Sum_probs=142.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|+|||+||+||||||+|+.||++|||+|+|+|.+||.+|. +.++++.+.....
T Consensus 1 m~ItI~g~~GSGk~tIak~LA~~lg~~~~d~g~i~r~~a~---~~g~~~~~~~~~~------------------------ 53 (178)
T PRK04182 1 MRITISGPPGSGKTTVARLLAEKLGLKLVSAGDIFRELAR---ERGMSLEEFNKYA------------------------ 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHH---HCCCCHHHHHHHH------------------------
T ss_conf 9899958998887999999999959938721299999999---8599999999998------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 11122057899998878888763038846206412556630388689984488889999866776521113569999999
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDL 168 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i 168 (217)
...|.+...+...|++++.+ +++|++||+++++++|++++||||+||+++|++|... .++++++++.+.+
T Consensus 54 ----e~~~~id~~~~~~~~~~a~~-~~~Vi~GR~~~~il~~~~~l~ifl~A~~e~R~~Ri~~-----r~~~~~~~a~~~i 123 (178)
T PRK04182 54 ----EEDPEIDKEIDRRQLELAKR-GNVVLEGRLAGWIVKNYADLKIYLKAPLEVRAKRIAE-----REGISVEEALEET 123 (178)
T ss_pred ----HCCHHHHHHHHHHHHHHHHC-CCEEEECCCCCEEECCCCCEEEEEECCHHHHHHHHHH-----HCCCCHHHHHHHH
T ss_conf ----51926899999999999853-9989983888769727987799998999999999997-----3299999999999
Q ss_pred HHHHHHCCCCCCC-----CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9985610236757-----85379973999778989899999999999987406
Q gi|254780457|r 169 RNRDNQDRNRSYC-----PLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDN 216 (217)
Q Consensus 169 ~~RD~~D~~R~~s-----PL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~n 216 (217)
.+||..|++|-.. |..+....++||||++++++|++.|.++|++.|+.
T Consensus 124 ~~rd~~~~~r~~~~y~~~~~d~~~ydl~Idts~l~~d~vv~~I~~~i~k~l~~ 176 (178)
T PRK04182 124 IEREESEAKRYLEYYGIDIDDLSIYDLVINTSKWSPEEVFEIILAAIDKLLLA 176 (178)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99899999999986089977531074899899999999999999999999844
No 11
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-31 Score=210.03 Aligned_cols=166 Identities=25% Similarity=0.408 Sum_probs=147.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|+|||.||+||||||+|+.||++||++|+++|.+||-+|. +.|+++.++....+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~---e~gmsl~ef~~~AE----------------------- 54 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMAR---ERGMSLEEFSRYAE----------------------- 54 (179)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHH---HCCCCHHHHHHHHH-----------------------
T ss_conf 9799617999970279999999829715621279999999---83999999999875-----------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 11122057899998878888763038846206412556630388689984488889999866776521113569999999
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDL 168 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i 168 (217)
.+|++-..+...|++++. ..++|+|||=-|+.+-+.|++||||.|++++||+| ....++.++++++.++
T Consensus 55 -----~~p~iD~~iD~rq~e~a~-~~nvVlegrLA~Wi~k~~adlkI~L~Apl~vRa~R-----ia~REgi~~~~a~~~~ 123 (179)
T COG1102 55 -----EDPEIDKEIDRRQKELAK-EGNVVLEGRLAGWIVREYADLKIWLKAPLEVRAER-----IAKREGIDVDEALAET 123 (179)
T ss_pred -----CCCHHHHHHHHHHHHHHH-CCCEEEHHHHHHHHHCCCCCEEEEEECCHHHHHHH-----HHHHCCCCHHHHHHHH
T ss_conf -----192166998899999987-28958700457887335654688885759999999-----9986089899999999
Q ss_pred HHHHHHCCCC-------CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 9985610236-------75785379973999778989899999999999987
Q gi|254780457|r 169 RNRDNQDRNR-------SYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 169 ~~RD~~D~~R-------~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
..|++.++.| .+..|...+ ++|||+.+++++|+..+...|+..
T Consensus 124 ~~RE~se~kRY~~~YgIDidDlSiyD--LVinTs~~~~~~v~~il~~aid~~ 173 (179)
T COG1102 124 VEREESEKKRYKKIYGIDIDDLSIYD--LVINTSKWDPEEVFLILLDAIDAL 173 (179)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEE--EEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 99889999999998587876663677--887536678889999999998742
No 12
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=100.00 E-value=3e-32 Score=213.56 Aligned_cols=163 Identities=25% Similarity=0.435 Sum_probs=141.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|+|||.||+||||||+||.||++|+|+|+++|.+ |-+| -+.|+++.+.+
T Consensus 1 M~I~ISGpPGSGktTvA~~lA~~Lsl~~iSaG~i-RelA---~~~Gldl~E~~--------------------------- 49 (173)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDI-RELA---EKMGLDLAESK--------------------------- 49 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEECCCHH-HHHH---HHCCCCHHHHH---------------------------
T ss_conf 9788735896864789999998639831202007-8898---64298877734---------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 11122057899998878888763038846206412556630---388689984488889999866776521113569999
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFP---DARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKIL 165 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfP---dA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~ 165 (217)
..+..|+|-+.+...|+++|.+.+++|+|||=-||+.-| -||++|||+|++++||.| ..+.++.++..++
T Consensus 50 --~aee~~eIDk~iD~~~~E~A~~~~nvvlEsrlagW~~~~nG~yaD~~iyL~A~levRA~R-----IA~Re~k~~~~A~ 122 (173)
T TIGR02173 50 --YAEENPEIDKKIDRRIREIAEKEKNVVLESRLAGWILKKNGEYADVKIYLKAPLEVRARR-----IAKRENKDLTVAL 122 (173)
T ss_pred --HHCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCEEEEECCCHHHHHHH-----HHHCCCCCHHHHH
T ss_conf --430586311675378855430489668852054331157889675678860883332433-----2113688989999
Q ss_pred HHHHHHHHHCCCC-------CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999985610236-------757853799739997789898999999999999
Q gi|254780457|r 166 EDLRNRDNQDRNR-------SYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 166 ~~i~~RD~~D~~R-------~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
+++.+|.+..+.| .++-|..-+ ++|||+++++++|.+.|..+++
T Consensus 123 ~~~~~REe~e~rRy~~iYgIDidDlsiYD--LvinT~~~~~~~v~~iv~~ald 173 (173)
T TIGR02173 123 KEIIEREESEKRRYKEIYGIDIDDLSIYD--LVINTSNLDVDEVSDIVLDALD 173 (173)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEE--EEEECCCCCHHHHHHHHHHHCC
T ss_conf 99999887622345665250234322220--0334476681269999998609
No 13
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.65 E-value=2.7e-14 Score=106.27 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=93.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 88189866687789678999999981783562028999998523210111014655333321011124444443201210
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIA 86 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~ 86 (217)
++.-|.+-|++||||||++|.||++|+|+|+|+..+-...+ +.++.+... +. .
T Consensus 3 ~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D~~Ie~~~------g~si~~if~--~~-G------------------ 55 (175)
T PRK00131 3 KGPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTDHLIEARA------GKSIPEIFE--EE-G------------------ 55 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH------CCCHHHHHH--HH-C------------------
T ss_conf 99808988899999899999999995969023988999761------699999999--85-8------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC-----CHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH--CCC
Q ss_conf 01111220578999988788887630388462064-----12556630388689984488889999866776521--113
Q gi|254780457|r 87 NVASQVASIDSVRDALIDIQRSFAQNKLGVILDGR-----DIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRG--EKV 159 (217)
Q Consensus 87 ~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGR-----DigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g--~~~ 159 (217)
.+..|+.=....+++....+.+|.-|- +-....+.+..+-|||+|++++.++|=... ..++ ...
T Consensus 56 --------e~~FR~~E~~~l~~l~~~~~~VIstGGG~v~~~~~~~~L~~~g~vV~L~~~~e~l~~Rl~~~-~~RPll~~~ 126 (175)
T PRK00131 56 --------EAGFRELEEEVLAELLQRHNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLARD-RNRPLLQTE 126 (175)
T ss_pred --------HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHCCC-CCCCCCCCC
T ss_conf --------89999999999996514798599748982268899999981693799857999999986489-999878899
Q ss_pred C-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5-6999999999856102367578537997399977898989999999999998740
Q gi|254780457|r 160 D-YVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 160 ~-~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
+ .+++.+-..+|+ |+.....-+.|||++++++|+++.|+++++..+.
T Consensus 127 ~~~~~l~~l~~~R~---------~~Y~~~Ad~~Idt~~~s~~ei~~~Ii~~L~~~~~ 174 (175)
T PRK00131 127 DPKEKLRALYEERD---------PLYEEVADLTIETDRRSPEEVVNEILELLELLLR 174 (175)
T ss_pred CHHHHHHHHHHHHH---------HHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 86999999999999---------9897538999989999999999999999999852
No 14
>PRK05480 uridine kinase; Provisional
Probab=99.60 E-value=4.5e-14 Score=105.00 Aligned_cols=194 Identities=19% Similarity=0.230 Sum_probs=113.9
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCC---CEEECCHHHHHHHHHHHHC--CCCHH-----HHHHHHHHHHHCCCC
Q ss_conf 5558818986668778967899999998178---3562028999998523210--11101-----465533332101112
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGF---HYLDTGLIYRAVAKNILDA--GISLD-----DEKMAIKIAQNIVLS 73 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~---~~ldtG~~YR~~a~~~~~~--~~~~~-----~~~~~~~~~~~i~~~ 73 (217)
|++++++|+|.|||||||||+|+.|++.|+- ..++.-.+|+.....-... ..+++ |.....+....+. +
T Consensus 2 ~~k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~Yy~~~~~~~~~e~~~~nfD~P~a~d~~ll~~~L~~L~-~ 80 (209)
T PRK05480 2 MMKQPIIIGIAGGSGSGKTTVASTIYEELGDESIAVISQDSYYKDQSHLSMEERVKTNYDHPDAFDHDLLIEHLKALK-A 80 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH-C
T ss_conf 988988999989997789999999999808687599955441247340788681236878826766999999999997-4
Q ss_pred CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH--HHHHCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 444444320121001111220578999988788887630388462064125--566303886899844888899998667
Q gi|254780457|r 74 NLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIG--TIIFPDARIKFYVTASLDIRARRRYNE 151 (217)
Q Consensus 74 ~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDig--TvVfPdA~~KifL~As~e~RA~RR~~e 151 (217)
+ ..+.-+.-+-... .|. .+. .. ....+=+|+||==+= ..+-.-.|+|||++++.++|-.||...
T Consensus 81 G---~~v~~P~Ydf~t~-------~r~--~~~-~~-i~~~~iiIvEGi~~l~~~~lr~~~DlkIfid~~~d~rl~RRi~R 146 (209)
T PRK05480 81 G---KAIEIPVYDYTEH-------TRS--KET-IH-VEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKR 146 (209)
T ss_pred C---CCCCCCCCCCCCC-------CCC--CCE-EE-ECCCCEEEEECHHHCCCHHHHHHHCEEEEEECCHHHHHHHHHHH
T ss_conf 9---9875675445566-------557--863-89-66987699934564067878865265799966777899999997
Q ss_pred -HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf -76521113569999999998561023675785379973999778989899999999999987406
Q gi|254780457|r 152 -MVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDN 216 (217)
Q Consensus 152 -l~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~n 216 (217)
...+| -+.++|+++-..+=+-...+-+.|.+...| ++|....-+ +-.++.+..+|+..|+.
T Consensus 147 D~~eRG--r~~e~vi~q~~~~v~p~~~~yI~P~k~~AD-lII~~~~~~-~va~~~i~~~i~~~l~~ 208 (209)
T PRK05480 147 DVNERG--RSLESVINQYLSTVRPMHLQFIEPSKRYAD-IIIPEGGKN-RVAIDILKAKIRQLLEK 208 (209)
T ss_pred HHHHHC--CCHHHHHHHHHHHHHHHHHHHCHHHHHCCE-EEECCCCCC-HHHHHHHHHHHHHHHHC
T ss_conf 899978--899999999999765769976845274240-898899964-59999999999999842
No 15
>PRK03839 putative kinase; Provisional
Probab=99.58 E-value=8.3e-14 Score=103.37 Aligned_cols=151 Identities=25% Similarity=0.392 Sum_probs=94.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|+|+|-|++|+||||+|+.||+++||.|++-|.+ +.+++.--.. +.. + ++
T Consensus 1 M~I~ITGTPGtGKTTva~~La~~lg~~~i~v~~l-------a~~~~~~~~~----------------d~~-~---~i--- 50 (180)
T PRK03839 1 MIIAITGTPGVGKTTISKLLAEKLGYEYVNLRDF-------ALEKGIGEEK----------------DDE-L---EI--- 50 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEEEHHHH-------HHHCCCCCCC----------------CCC-C---CC---
T ss_conf 9899978999998999999999769879879999-------9983998676----------------775-0---46---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCC---C--CHHH
Q ss_conf 1112205789999887888876303884620641255663038868998448888999986677652111---3--5699
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEK---V--DYVK 163 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~---~--~~~e 163 (217)
-...+.+++ .+.+ ..+++|+||. .+..|| +|+=|.|.|++++-.+|= .++|-+ + +.+-
T Consensus 51 -----D~d~l~~~~---~~~~--~~~~~ivd~H--~~h~~p-~D~VIVLR~~P~iL~~RL----~~RgYs~~KI~ENvea 113 (180)
T PRK03839 51 -----DVDELAYFV---EEEF--KGKNVVLDGH--LSHLMP-ADLVIVLRAHPKLIAERL----KERGYSKKKIGENVEA 113 (180)
T ss_pred -----CHHHHHHHH---HHHH--CCCCEEEEEE--CCCCCC-CCEEEEEECCHHHHHHHH----HHCCCCHHHHHHHHHH
T ss_conf -----599999999---9873--4898899864--314636-877999978869999999----9769998999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999856102367578537997399977898989999999999998740
Q gi|254780457|r 164 ILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 164 v~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
-.-....=|..+.. +..+.||||+++++++++.|...|..+++
T Consensus 114 Eil~vil~Ea~e~~---------~~~~eidtt~~~pe~v~~~I~~~i~~~~~ 156 (180)
T PRK03839 114 ELVDVILIEALEEH---------ENVIEVDTTNKTPEEVVEEILNLIKSGVK 156 (180)
T ss_pred HHHHHHHHHHHHHC---------CCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999999843---------98899989999999999999999957998
No 16
>PRK08233 hypothetical protein; Provisional
Probab=99.53 E-value=6.9e-13 Score=97.89 Aligned_cols=170 Identities=13% Similarity=0.094 Sum_probs=96.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 58818986668778967899999998178356202899999852321011101465533332101112444444320121
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAI 85 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I 85 (217)
+|++||+|-|++||||||+|+.|.++|+...+-+ .-....+..............+++..+.
T Consensus 1 kkp~IIgIaGgSgSGKTtla~~l~~~l~~~~~~~----------~D~y~~~~~~~~~~~~~~~~~~~d~~d~-------- 62 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKLKNSKALY----------FDRYDFDNCPEDICKWIDDGANYSEWVL-------- 62 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE----------ECCCCCCCCHHHHHHHHCCCCCCCHHHH--------
T ss_conf 9988999968886789999999999746775899----------6665554687889987406778666669--------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCEEEECCCHHHHHH------CCCCEEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 001111220578999988788887630--3884620641255663------03886899844888899998667765211
Q gi|254780457|r 86 ANVASQVASIDSVRDALIDIQRSFAQN--KLGVILDGRDIGTIIF------PDARIKFYVTASLDIRARRRYNEMVSRGE 157 (217)
Q Consensus 86 ~~~~S~iA~~p~VR~~l~~~Qr~~~~~--~~g~V~EGRDigTvVf------PdA~~KifL~As~e~RA~RR~~el~~~g~ 157 (217)
..+....+++... ..-+|+||= -+| +--|+|||+++++++|-.||..--.....
T Consensus 63 --------------~~l~~~l~~l~~~~~~d~iIvEgi----l~l~~~~lr~l~D~kIfVdtp~Dirl~RRi~RDi~Er~ 124 (182)
T PRK08233 63 --------------TPLIKDIQELIAKSNVDYIIVDYP----FAYLNSEMRQYIDVTIFIDTPLDIAMARRILRDFKEDT 124 (182)
T ss_pred --------------HHHHHHHHHHHCCCCCCEEEEEEE----HHHCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf --------------999999999855998728999644----36268989977187899728689999998888877761
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 13569999999998561023675785379973999778989899999999999987
Q gi|254780457|r 158 KVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 158 ~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
.-+.+.|+++-...=+-=...-+.|.+...| ++||++ .+++.++++|.+++.++
T Consensus 125 gr~i~svl~qY~~~VrPm~~~fvePsk~~AD-iIId~~-~aid~i~~~i~~~l~~~ 178 (182)
T PRK08233 125 GNEIHNDLKHYLNYARPLYLEALDTVKPNAD-IVLDGA-LSVEEIINQIEEELYRR 178 (182)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCHHHHCCC-EEEECC-CCHHHHHHHHHHHHHHC
T ss_conf 8878999999999878899998570032196-898586-07999999999999745
No 17
>PRK07429 phosphoribulokinase; Provisional
Probab=99.46 E-value=7.8e-13 Score=97.58 Aligned_cols=168 Identities=13% Similarity=0.175 Sum_probs=106.0
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC---EEECCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCC
Q ss_conf 97655588189866687789678999999981783---5620289999985232101-----110146553333210111
Q gi|254780457|r 1 MGRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFH---YLDTGLIYRAVAKNILDAG-----ISLDDEKMAIKIAQNIVL 72 (217)
Q Consensus 1 m~~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~---~ldtG~~YR~~a~~~~~~~-----~~~~~~~~~~~~~~~i~~ 72 (217)
|.+|..++++|+|-|-|||||||+++.|++.||-. .+..-.+||.=-..-...+ ++-++.....+..+.+.-
T Consensus 1 m~~m~~rP~IIGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~DdYhk~dr~~r~~~~~t~lhP~And~dLl~e~L~~Lk~ 80 (331)
T PRK07429 1 MTSMPDRPVIIGVAGDSGCGKSTFLRRLADLFGEELVTVICLDDYHSLDRKQRKEIGITALDPRANNFDLMYEQLKALKT 80 (331)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHC
T ss_conf 99899999899985788778999999999983888779994786777887889871898789640059999999999985
Q ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHH------CCCCEEEEEECCHHHHHH
Q ss_conf 24444443201210011112205789999887888876303884620641255663------038868998448888999
Q gi|254780457|r 73 SNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIF------PDARIKFYVTASLDIRAR 146 (217)
Q Consensus 73 ~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVf------PdA~~KifL~As~e~RA~ 146 (217)
..--..-+++...+.. .. | +.+.-.+=+|+||= .+| ---|+|||++++.++|-.
T Consensus 81 Gk~I~~PvYdh~tg~~----~~-~-----------~~I~P~~vIIvEGL----h~L~~~~lR~l~DlKIFVD~d~diR~~ 140 (331)
T PRK07429 81 GQPILKPIYNHETGKI----DP-P-----------EYIKPNKIVVVEGL----HPLYDERVRDLYDFKVYLDPPDEVKIA 140 (331)
T ss_pred CCCCCCCCCCCCCCCC----CC-C-----------EEECCCCEEEEECC----HHCCCHHHHHHCCEEEEECCCHHHHHH
T ss_conf 9972565235647877----88-6-----------66068867999161----212879899754937996487889999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 98667765211135699999999985610236757853799739
Q gi|254780457|r 147 RRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAY 190 (217)
Q Consensus 147 RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi 190 (217)
||...-... ..-+.++|+++|..| +-|..+-+.|=++..|.+
T Consensus 141 rRI~RDv~E-RG~s~E~Vl~qi~~R-kpD~~~yI~PQk~~ADiV 182 (331)
T PRK07429 141 WKIKRDMAE-RGHTYEDVLAEIEKR-EPDFEAYIDPQRQYADVV 182 (331)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHC-CHHHHHHCCCCHHCCCEE
T ss_conf 988877866-189999999999851-178997668041127289
No 18
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.41 E-value=4.1e-12 Score=93.27 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=103.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCC---EEECCHHHHHHHHHHH--HCCCCHHH-----HHHHHHHHHHCCCCCC
Q ss_conf 588189866687789678999999981783---5620289999985232--10111014-----6553333210111244
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFH---YLDTGLIYRAVAKNIL--DAGISLDD-----EKMAIKIAQNIVLSNL 75 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~---~ldtG~~YR~~a~~~~--~~~~~~~~-----~~~~~~~~~~i~~~~~ 75 (217)
.+.++|.|.|+|||||||+|+.|+..|+-. -+.---+|......-. ..+++.+. .....+...++.-...
T Consensus 6 ~~~iiIgIaG~SgSGKTTv~~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHCCCC
T ss_conf 76699998679877889999999998286752476522320253016675537857448234368999999999976992
Q ss_pred CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC----CHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 4444320121001111220578999988788887630388462064----125566303886899844888899998667
Q gi|254780457|r 76 DKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGR----DIGTIIFPDARIKFYVTASLDIRARRRYNE 151 (217)
Q Consensus 76 ~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGR----DigTvVfPdA~~KifL~As~e~RA~RR~~e 151 (217)
|.. +.+.-....|.+ +........=+|+||= | ..+-.-.++|+|++++.++|+.||..+
T Consensus 86 ---------v~~--P~yd~~~~~r~~----~~i~~~p~~VIIvEGi~~l~d--~~lr~~~d~kIfvdt~~D~RliRri~R 148 (218)
T COG0572 86 ---------VDL--PVYDYKTHTREP----ETIKVEPNDVVIVEGILLLYD--ERLRDLMDLKIFVDTDADVRLIRRIKR 148 (218)
T ss_pred ---------CCC--CCCCHHCCCCCC----CCCCCCCCCEEEEECCCCCCC--HHHHHHCCEEEEEECCCCHHHHHHHHH
T ss_conf ---------245--642031363257----733138972899942300150--767766067899977832788998887
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 76521113569999999998561023675785379973999778989
Q gi|254780457|r 152 MVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMD 198 (217)
Q Consensus 152 l~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~ls 198 (217)
-.+ +...+++.++++....=+-...+-+-|-+.-.| ++|-.+..+
T Consensus 149 D~~-~rg~~~~~vi~qy~~~vkp~~~~fIeptk~~AD-iiip~~~~n 193 (218)
T COG0572 149 DVQ-ERGRDLESVIEQYVKTVRPMYEQFIEPTKKYAD-IIIPSGGKN 193 (218)
T ss_pred HHH-HHCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCE-EEEECCCCC
T ss_conf 798-819998999999998617414601574511160-785158864
No 19
>PTZ00301 uridine kinase; Provisional
Probab=99.37 E-value=9e-12 Score=91.23 Aligned_cols=189 Identities=17% Similarity=0.190 Sum_probs=109.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC-------CEEECCHHHHHHHHHHHH--CCCCHH-----HHHHHHHHHHHCC
Q ss_conf 58818986668778967899999998178-------356202899999852321--011101-----4655333321011
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGF-------HYLDTGLIYRAVAKNILD--AGISLD-----DEKMAIKIAQNIV 71 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~-------~~ldtG~~YR~~a~~~~~--~~~~~~-----~~~~~~~~~~~i~ 71 (217)
++..||+|-|+|||||||+|+.|++.|.- ..+..-.+|+.....-.. ...+++ |.....+....+.
T Consensus 1 m~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~~~NfDhP~a~D~dLl~~~L~~Lk 80 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELK 80 (210)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99889999688767899999999999876149980799836766778765886562788999823036999999999997
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCC------CCEEEEEECCHHHHH
Q ss_conf 12444444320121001111220578999988788887630388462064125566303------886899844888899
Q gi|254780457|r 72 LSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPD------ARIKFYVTASLDIRA 145 (217)
Q Consensus 72 ~~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPd------A~~KifL~As~e~RA 145 (217)
-. ..+.-+.-+- ... -|. ..... +...+=+|+|| ..+|-+ -|+|||++++.++|-
T Consensus 81 ~G----k~I~~P~Ydf-----~~h--~R~---~~~~~-i~p~~vIIvEG----i~~l~~~~lr~l~DlkIFvd~~~dirl 141 (210)
T PTZ00301 81 SG----KTVQIPQYDY-----VHH--TRS---DTAVT-MTPKSVLIVEG----ILLFTNAELRNEMDCLIFVDTPLDICL 141 (210)
T ss_pred CC----CCEECCCCCC-----CCC--CCC---CCEEE-ECCCCEEEEEE----EHHCCCHHHHHHHCEEEEECCCHHHHH
T ss_conf 69----9634466555-----677--667---97089-66885699971----043078989977424577348723788
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99866776521113569999999998561023675785379973999778989899999999999987406
Q gi|254780457|r 146 RRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDN 216 (217)
Q Consensus 146 ~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~n 216 (217)
.||...-... ..-+.++|+++..++=+-...+=+.|.+...| ++|... -+-+-.++.+..+|+.-|+|
T Consensus 142 ~RRi~RDv~e-RGr~~e~Vi~qy~~~V~P~~~~fI~P~k~~AD-iIIp~~-~~n~va~~~i~~~i~~~l~~ 209 (210)
T PTZ00301 142 IRRAKRDMRE-RGRTFESVIEQYEATVRPMYYAYVEPSKVYAD-IIVPSW-KDNSVAVGVLRAKLNHDLEN 209 (210)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHCCCHHHHCCHHHHCCC-EEECCC-CCCCHHHHHHHHHHHHHHHC
T ss_conf 9988877887-58899999999996623058876805163361-897899-98631999999999999851
No 20
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.37 E-value=7.4e-12 Score=91.72 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=100.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC---CEEECCHHHHHHHHHHHHC--CCCH-----HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8986668778967899999998178---3562028999998523210--1110-----1465533332101112444444
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGF---HYLDTGLIYRAVAKNILDA--GISL-----DDEKMAIKIAQNIVLSNLDKAQ 79 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~---~~ldtG~~YR~~a~~~~~~--~~~~-----~~~~~~~~~~~~i~~~~~~~~~ 79 (217)
+|+|.|+|||||||+|+.|++.|+- ..++.--+|+...-.-... ..++ .+.....+....+. ++ ..
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~yy~~~~~~~~~~~~~~~fd~p~a~d~~~l~~~L~~L~-~g---~~ 76 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLK-NG---KS 76 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHH-CC---CC
T ss_conf 989889998859999999999809998589978888879860438784367878922644999999999986-48---97
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHH------CCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 3201210011112205789999887888876303884620641255663------0388689984488889999866776
Q gi|254780457|r 80 LSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIF------PDARIKFYVTASLDIRARRRYNEMV 153 (217)
Q Consensus 80 lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVf------PdA~~KifL~As~e~RA~RR~~el~ 153 (217)
+.-+.-+-.... | .. +...+...+=+|+||= .+| .-.|+|||++++.++|-.||...-.
T Consensus 77 i~~p~Yd~~t~~-------r---~~-~~~~i~~~~iiIvEGi----~~l~~~~lr~~~D~kIfid~~~d~rl~Rri~RD~ 141 (198)
T cd02023 77 VEIPVYDFKTHS-------R---LK-ETVTVYPADVIILEGI----LALYDKELRDLMDLKIFVDTDADVRLIRRIERDI 141 (198)
T ss_pred CCCCCEECCCCC-------C---CC-CCEEECCCCEEEEECH----HHCCCHHHHHHHHCEEEEECCHHHHHHHHHHHHH
T ss_conf 612310034575-------4---67-7279658865998253----4306888886740237861789999999998769
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 52111356999999999856102367578537997399977898989999999999998
Q gi|254780457|r 154 SRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 154 ~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
.. ..-+.++|+.+...+-+....+-+.|.+.-.| ++|-....+ +..++.+.+.|+.
T Consensus 142 ~e-Rg~~~~~v~~~~~~~v~p~~~~~i~P~k~~AD-lIi~~~~~~-~~~~~~i~~~i~~ 197 (198)
T cd02023 142 VE-RGRDLESVINQYLKFVKPMHEQFIEPTKRYAD-VIIPRGGDN-HVAIDLIVQHIKS 197 (198)
T ss_pred HH-HCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCC-EEECCCCCC-CHHHHHHHHHHHC
T ss_conf 88-58999999999998607879986524151473-897899986-2199999999845
No 21
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.36 E-value=8.1e-11 Score=85.54 Aligned_cols=149 Identities=21% Similarity=0.320 Sum_probs=97.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|.|+|-|++|+||||+|++|+ +||+.+++-+. ++.+++.-... .+. .
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~e-------l~~e~~~~~~~------------------de~-------r 47 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNE-------LAKENGLYTEY------------------DEL-------R 47 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH-HHCCCEEEHHH-------HHHHCCCEECC------------------CCC-------C
T ss_conf 937993799986687999999-82984661999-------99866971143------------------776-------6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 11122057899998878888763038846206412556630388689984488889999866776521113569999999
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDL 168 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i 168 (217)
-|.+.-.-.+|..+-... ..++.|+||. -+..+|+.|+=|-|.|++++=.+| |+.+|-+ -+.|.+++
T Consensus 48 ~s~~vD~d~~~~~le~~~-----~~~~~Ivd~H--~~hl~~~~dlVvVLR~~p~~L~~R----Lk~RGy~--~eKI~ENv 114 (180)
T COG1936 48 KSVIVDVDKLRKRLEELL-----REGSGIVDSH--LSHLLPDCDLVVVLRADPEVLYER----LKGRGYS--EEKILENV 114 (180)
T ss_pred CEEEEEHHHHHHHHHHHH-----CCCCEEEECH--HHHCCCCCCEEEEECCCHHHHHHH----HHHCCCC--HHHHHHHH
T ss_conf 158866799998888875-----0588476126--662178788899971898999999----9876998--78988779
Q ss_pred -------HHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf -------99856102367578537997399977898989999999999998
Q gi|254780457|r 169 -------RNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 169 -------~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
..=+.... .+..+.||||+.+++++++.|.+.|..
T Consensus 115 eAEi~~vi~~EA~E~---------~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 115 EAEILDVILIEAVER---------FEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHHHHHHHHHH---------CCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 999999999999973---------476499978999999999999999703
No 22
>PRK13946 shikimate kinase; Provisional
Probab=99.34 E-value=4.1e-10 Score=81.30 Aligned_cols=162 Identities=16% Similarity=0.231 Sum_probs=91.2
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 55588189866687789678999999981783562028999998523210111014655333321011124444443201
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSN 83 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~ 83 (217)
|.+|+++.. |+.||||||++|.||++|+|+|+||-.+--. ..+.++.+.... ..
T Consensus 18 l~kknIvLI--G~mGsGKStvGk~LA~~L~~~fiD~D~~IE~------~~g~sI~eIF~~---~G--------------- 71 (195)
T PRK13946 18 LGKRTVVLV--GLMGAGKSTVGRRLATMLGLPFLDADTEIER------AARMTIPEIFAT---YG--------------- 71 (195)
T ss_pred HCCCCEEEE--CCCCCCHHHHHHHHHHHHCCCEEECHHHHHH------HHCCCHHHHHHH---HC---------------
T ss_conf 589958998--9999988999999999979798988599999------809989999998---69---------------
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH-------HHCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 2100111122057899998878888763038846206412556-------630388689984488889999866776521
Q gi|254780457|r 84 AIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTI-------IFPDARIKFYVTASLDIRARRRYNEMVSRG 156 (217)
Q Consensus 84 ~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTv-------VfPdA~~KifL~As~e~RA~RR~~el~~~g 156 (217)
....|+.=.....++....+.+|.=|= |++ .+-+--+-|||+|++++=.+|=-.. ..+.
T Consensus 72 -----------E~~FR~~E~~~l~~l~~~~~~VIstGG--G~v~~~~n~~~L~~~g~vI~L~~~~e~l~~Rl~~~-~~RP 137 (195)
T PRK13946 72 -----------EPEFRDLERRVIARLLKGGPLVLATGG--GAFMNEETRAAIREKGISVWLKADLDVLWERVSRR-DTRP 137 (195)
T ss_pred -----------HHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHCCC-CCCC
T ss_conf -----------799999899999998648987997587--42368999999995796899849999999997289-9999
Q ss_pred --CCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --1135699-9999999856102367578537997399977898989999999999998740
Q gi|254780457|r 157 --EKVDYVK-ILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 157 --~~~~~~e-v~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
...+..+ +.+-+.+|.. +..-.| +.|||++++++++++.|++.+...++
T Consensus 138 Ll~~~~~~~~l~~l~~~R~~---------lY~~Ad-~~I~t~~~s~~~ia~eIi~~L~~~~~ 189 (195)
T PRK13946 138 LLRTADPKETLARLMEERYP---------VYAQAD-LTVESRDVPHEVIADEVIEALAAYLE 189 (195)
T ss_pred CCCCCCHHHHHHHHHHHHHH---------HHHHCC-EEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89998879999999999999---------999789-89889989999999999999999985
No 23
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.32 E-value=6.4e-11 Score=86.12 Aligned_cols=167 Identities=13% Similarity=0.215 Sum_probs=100.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-----EEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 655588189866687789678999999981783-----562028999998523210111014655333321011124444
Q gi|254780457|r 3 RLESQSIIIAIDGTAAAGKGVLSRFIALEYGFH-----YLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDK 77 (217)
Q Consensus 3 ~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~-----~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 77 (217)
.|+.|+++|=+-|.|||||||+|+.|.++|.-. +||.- -.|.+- -..+.+..+..........+ .
T Consensus 2 ~~~~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD-~lR~~~---~~~gfs~~~R~~n~~r~~~l------a 71 (176)
T PRK05541 2 QMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD-ELREIF---GHSGYDKESRIEMALKRAKL------A 71 (176)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCH-HHHHHH---CCCCCCHHHHHHHHHHHHHH------H
T ss_conf 8788867999789999989999999999999759977998868-999873---65898999999999999999------9
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 44320121001111220578999988788887630388462064125566303886899844888899998667765211
Q gi|254780457|r 78 AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGE 157 (217)
Q Consensus 78 ~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~ 157 (217)
..|...-+.-.+|.+|..+++|++..+. +|+- +-+|+.|++++..+|=-+-|-++
T Consensus 72 k~l~~~g~~vIvs~isp~~~~R~~~R~~----------------------~~~~-~EVyv~~ple~~~~RD~KgLY~k-- 126 (176)
T PRK05541 72 AFLADQGMIVIVTTISMFNEIYAYNRKH----------------------LPNY-FEVYLKCDMEELIRRDQKGLYTK-- 126 (176)
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHH----------------------CCCC-EEEEEECCHHHHHHCCCHHHHHH--
T ss_conf 9986469803675227989999999974----------------------8876-89999489999987385417899--
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 135699999999985610236757853799739997789-898999999999999874
Q gi|254780457|r 158 KVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSE-MDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 158 ~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~-lsi~ev~~~i~~~I~~kl 214 (217)
-..-...+..=--.|.-+|.--++||||. .++++.+++|+++++++.
T Consensus 127 ----------a~~g~i~n~~Gid~pye~P~~~~~i~~t~~~s~~e~~~~Il~~lk~r~ 174 (176)
T PRK05541 127 ----------ALKGEISNVVGVDIPFDEPKADLVIDNSCRTSLDEKVDLILNKLKLRL 174 (176)
T ss_pred ----------HHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf ----------875988896105689999899989879999899999999999999706
No 24
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.30 E-value=1.2e-10 Score=84.62 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=98.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-----EEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 5588189866687789678999999981783-----56202899999852321011101465533332101112444444
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFH-----YLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQ 79 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~-----~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (217)
+.|.++|=+-|.|||||||+|+.|.++|.=. +|| |--.|.. +.-+.+.+..+..........+ ...
T Consensus 1 ~~kg~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LD-GD~lR~~--l~~~lgfs~~dR~~n~~r~~~l------a~~ 71 (175)
T PRK00889 1 MQRGVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLD-GDIVRTN--LSKGLGFSKEDRDTNIRRIGFV------AHL 71 (175)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHHH--HCCCCCCCHHHHHHHHHHHHHH------HHH
T ss_conf 998889998898999999999999999998699679977-6888875--3678898989999999999999------999
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 32012100111122057899998878888763038846206412556630388689984488889999866776521113
Q gi|254780457|r 80 LSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKV 159 (217)
Q Consensus 80 lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~ 159 (217)
+...-+.-.+|.+|..+++|++..+. +++ -+-||+.|++++..+|=.+.+-++-..
T Consensus 72 l~~~g~~vIvs~isp~~~~R~~~r~~----------------------~~~-~~EIyv~~~l~~~~~RD~KgLY~ka~~- 127 (175)
T PRK00889 72 LTRHGVIVLVSAISPYRETREEVRGT----------------------IGN-FVEVFVNAPLEVCEQRDVKGLYAKARA- 127 (175)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHH----------------------CCC-CEEEEECCCHHHHHHCCHHHHHHHHHC-
T ss_conf 98189868885047999999999985----------------------787-669984288899988070547789764-
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 569999999998561023675785379973-999778989899999999999987
Q gi|254780457|r 160 DYVKILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 160 ~~~ev~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
=...+..=-.+|--+|.++ ++|||+.+++++.+++|+++++++
T Consensus 128 -----------g~i~n~~Gid~~yE~P~~pdl~IdT~~~si~~~~~~Ii~~L~~~ 171 (175)
T PRK00889 128 -----------GEIKHFTGIDDPYEPPLNPEVECRTDLESLEESVAKVLQKLEEL 171 (175)
T ss_pred -----------CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf -----------87788400568999999980698799999999999999999985
No 25
>PRK13948 shikimate kinase; Provisional
Probab=99.30 E-value=3.7e-10 Score=81.55 Aligned_cols=167 Identities=15% Similarity=0.185 Sum_probs=95.4
Q ss_pred CCCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97655588--1898666877896789999999817835620289999985232101110146553333210111244444
Q gi|254780457|r 1 MGRLESQS--IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKA 78 (217)
Q Consensus 1 m~~~~~k~--~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (217)
|.+|.... -.|.+=|+.||||||++|.||++|+|+|+||-.+--. ..+.++.+.... .
T Consensus 1 ~~~~~~p~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~~Ie~------~~g~sI~eIF~~---~----------- 60 (182)
T PRK13948 1 MARLEVPRPATFVALAGFMGTGKSRIGWELSRALALHFVDTDKLITR------VVGKSIPEVFAQ---E----------- 60 (182)
T ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH------HHCCCHHHHHHH---H-----------
T ss_conf 98665799998189889999988999999999969598888499999------889399999998---4-----------
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC-------CCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 43201210011112205789999887888876303-------88462064125566303886899844888899998667
Q gi|254780457|r 79 QLSSNAIANVASQVASIDSVRDALIDIQRSFAQNK-------LGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNE 151 (217)
Q Consensus 79 ~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~-------~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~e 151 (217)
-.+..|+.=.+..+++.... +|+|+.-. .-..+-+...-|||+|++++=.+|- ..
T Consensus 61 ---------------GE~~FR~~E~~~l~~l~~~~~~VIStGGG~v~~~~--n~~~l~~~g~vv~L~~~~~~i~~R~-~~ 122 (182)
T PRK13948 61 ---------------GEEYFRACEKEVVRRVTRLDYAVISLGGGTFIHEE--NRRALLGRGPVVVLWASPETVYQRT-KH 122 (182)
T ss_pred ---------------CHHHHHHHHHHHHHHHHCCCCEEEECCCCEECCHH--HHHHHHHCCEEEEEECCHHHHHHHC-CC
T ss_conf ---------------89999999999999997479969975885005899--9999996898999969999999881-78
Q ss_pred HHHHH--CCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 76521--1135-69999999998561023675785379973999778989899999999999987406
Q gi|254780457|r 152 MVSRG--EKVD-YVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDN 216 (217)
Q Consensus 152 l~~~g--~~~~-~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~n 216 (217)
..+. ...+ .+++.+-+.+|. |+..-.| +.|||++++++|+++.|++.+....++
T Consensus 123 -~~RPll~~~~~~~~l~~l~~eR~---------~~Y~~A~-~~I~td~~~~~eiv~~Ii~~L~a~~~~ 179 (182)
T PRK13948 123 -SDRPLLQVEDPLERIRTLMEERE---------PVYRQGT-IHVHSDGRPVEEIVEEVVERLWAWAEA 179 (182)
T ss_pred -CCCCCCCCCCHHHHHHHHHHHHH---------HHHHHCC-EEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf -99998889987999999999999---------9999678-898899899999999999999999866
No 26
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.29 E-value=5.6e-11 Score=86.50 Aligned_cols=170 Identities=24% Similarity=0.305 Sum_probs=91.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|.|-|=||+||||||.|++||++|||.|+++|-+.|.-. ..+-.+. +..+.. ++.-+|-.+++
T Consensus 1 m~iillG~PGsGKgTqa~~la~~~~~~~is~GdllR~~i----~~~s~~g------~~i~~~----~~~G~lVpd~i--- 63 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAI----KAGTELG------KEAKSY----MDAGELVPDEI--- 63 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHH----HCCCHHH------HHHHHH----HHCCCCCCHHH---
T ss_conf 979998999998799999999986991786889999998----7399889------999999----97798778899---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHHHHH-------HCC--CCEEEEEECCHHHHHHHHHHHH-----
Q ss_conf 11122057899998878888763038846206--4125566-------303--8868998448888999986677-----
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTII-------FPD--ARIKFYVTASLDIRARRRYNEM----- 152 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDigTvV-------fPd--A~~KifL~As~e~RA~RR~~el----- 152 (217)
....|++.|. +. ....|+|+|| |.+.-.- .++ -++=|+|+++.++-.+|-....
T Consensus 64 -----~~~lv~~~l~----~~-~~~~G~IlDGfPRt~~Qa~~l~~~l~~~~~~i~~Vi~l~v~~~~~~~Rl~~R~~~~~~ 133 (215)
T PRK00279 64 -----VIGLVKERLA----QP-DCANGFLLDGFPRTIPQAEALDEMLKEAGIKLDAVIEIDVPDEELVERLSGRRICPAC 133 (215)
T ss_pred -----HHHHHHHHHH----CC-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCC
T ss_conf -----9999999983----65-6557079868999879999999999864998688999968899999998611567556
Q ss_pred ------------------------HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC---CCE-EEEECCCCCHHHHHH
Q ss_conf ------------------------6521113569999999998561023675785379---973-999778989899999
Q gi|254780457|r 153 ------------------------VSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRD---KDA-YFFDTSEMDIGTMCK 204 (217)
Q Consensus 153 ------------------------~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a---~DA-i~IDTs~lsi~ev~~ 204 (217)
..+ .+-+.+ .+.+| ....+....|+... .+- +.||.+. ++++|++
T Consensus 134 g~~y~~~~~pp~~~~~~~~~~~~l~~R-~DD~~e----~i~~R-l~~y~~~t~pvi~~y~~~~~l~~Idg~~-~~~eV~~ 206 (215)
T PRK00279 134 GRTYHVKFNPPKVEGKCDVTGEELIQR-ADDNEE----TVRKR-LEVYHKQTAPLIDYYKKKGKLKKIDGTG-SIDEVFA 206 (215)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHH----HHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHH
T ss_conf 764554578988666455433202579-998699----99999-9999998889999998179789998989-9899999
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254780457|r 205 VAKGLIDT 212 (217)
Q Consensus 205 ~i~~~I~~ 212 (217)
.|.+.+++
T Consensus 207 ~I~~~l~~ 214 (215)
T PRK00279 207 DILKALGK 214 (215)
T ss_pred HHHHHHHC
T ss_conf 99999844
No 27
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.27 E-value=2.5e-10 Score=82.61 Aligned_cols=167 Identities=14% Similarity=0.184 Sum_probs=98.5
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCC-----CEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5558818986668778967899999998178-----35620289999985232101110146553333210111244444
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGF-----HYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKA 78 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~-----~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (217)
...|+++|=+-|.|||||||+|+.|.++|.= .+|| |--.|.. +.-+.+.+..+..........+- .
T Consensus 20 ~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LD-GD~lR~~--l~~dlgfs~~dR~~n~~r~~~la------k 90 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLD-GDNVRHG--LCSDLGFSDADRKENIRRVGEVA------K 90 (198)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC-HHHHHHH--HCCCCCCCHHHHHHHHHHHHHHH------H
T ss_conf 6899869998799999889999999999997599759977-7999874--36678989999999999999999------9
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 4320121001111220578999988788887630388462064125566303886-899844888899998667765211
Q gi|254780457|r 79 QLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARI-KFYVTASLDIRARRRYNEMVSRGE 157 (217)
Q Consensus 79 ~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~-KifL~As~e~RA~RR~~el~~~g~ 157 (217)
-+...-+.-.+|.+|..++.|++.. +. +|+..+ -+||.|++++..+|=-+-+-++-
T Consensus 91 ~l~~~G~iVIvs~Isp~~~~R~~~R----~~------------------~~~~~f~EIyl~~~le~c~~RD~KgLY~ka- 147 (198)
T PRK03846 91 LMVDAGLVVLTAFISPHRAERQMVR----ER------------------LGEGEFIEVFVDTPLAICEARDPKGLYKKA- 147 (198)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHH----HH------------------CCCCCEEEEEECCCHHHHHHCCCHHHHHHH-
T ss_conf 9985898366414788799999999----86------------------787757999943889999873816578898-
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 13569999999998561023675785379973-999778989899999999999987
Q gi|254780457|r 158 KVDYVKILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 158 ~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
..=...+..=-.+|.-+|..+ ++|||+.+|+++.+++|+++++++
T Consensus 148 -----------~~gei~n~~Gvd~pyE~P~~pdl~Idt~~~si~~~~~~I~~~l~~~ 193 (198)
T PRK03846 148 -----------RAGEIKNFTGIDSPYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQR 193 (198)
T ss_pred -----------HCCCCCCCEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf -----------6588888400788999999980698699999999999999999986
No 28
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.27 E-value=8.8e-10 Score=79.35 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=94.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 88189866687789678999999981783562028999998523210111014655333321011124444443201210
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIA 86 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~ 86 (217)
+.-.||.=|.-|+||||++++||++|||+|+|+-..--. ..+.++.++.... .
T Consensus 132 ~~~rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD~~IEk------~aG~sI~eIFa~~---G------------------ 184 (304)
T PRK08154 132 RRPRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIER------EAGLSVSEIFALY---G------------------ 184 (304)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH------HHCCCHHHHHHHH---C------------------
T ss_conf 778479889999988899999999959897787799999------9299999999986---8------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH--------HHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--HHH
Q ss_conf 011112205789999887888876--------3038846206412556630388689984488889999866776--521
Q gi|254780457|r 87 NVASQVASIDSVRDALIDIQRSFA--------QNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMV--SRG 156 (217)
Q Consensus 87 ~~~S~iA~~p~VR~~l~~~Qr~~~--------~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~--~~g 156 (217)
....|+.=.....++. ...+|+|++-.. ...+-..-+=|||+|++++=.+|-..|-. -.-
T Consensus 185 --------E~~FR~~E~~~L~~ll~~~~~~VIAtGGGiV~~~~n--~~~L~~~g~vVwL~aspe~l~~Rv~~~gd~RPLl 254 (304)
T PRK08154 185 --------QEGYRRLERRALERLIAEHEEMVLATGGGIVSEPAT--FDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMA 254 (304)
T ss_pred --------HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH--HHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCC
T ss_conf --------899999999999998711699899728721278899--9999968989999799999999986489999999
Q ss_pred CC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 11-35699999999985610236757853799739997789898999999999999874
Q gi|254780457|r 157 EK-VDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 157 ~~-~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
.+ ..++++..=+.+|. ||..--| ++||||.++++|+++.+..+|...+
T Consensus 255 ~~~~a~e~L~~ll~~R~---------plY~~AD-~~IdTsg~tvees~~~L~~lv~~~~ 303 (304)
T PRK08154 255 DNREAMEDLRRILASRE---------PLYARAD-AVVDTSGLTVEASLARLRELVRPAL 303 (304)
T ss_pred CCCCHHHHHHHHHHHHH---------HHHHHCC-EEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 99888999999999878---------8998689-8987999999999999999999860
No 29
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.27 E-value=1.2e-09 Score=78.50 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=84.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
Q ss_conf 89866687789678999999981783562028999998523210111014655333321011124444443201210011
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVA 89 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~ 89 (217)
-|.+=|+.||||||++|.||++|+|+|+||-.+--. ..+.++.+.. ...
T Consensus 6 nI~LiG~mGsGKstvgk~LA~~l~~~fiD~D~~Ie~------~~g~si~~If---~~~---------------------- 54 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK------RTGADIGWVF---DVE---------------------- 54 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH------HHCCCHHHHH---HHH----------------------
T ss_conf 289889999988999999999969996878099999------9798999999---997----------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC-------CCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH--CCCC
Q ss_conf 112205789999887888876303-------8846206412556630388689984488889999866776521--1135
Q gi|254780457|r 90 SQVASIDSVRDALIDIQRSFAQNK-------LGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRG--EKVD 160 (217)
Q Consensus 90 S~iA~~p~VR~~l~~~Qr~~~~~~-------~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g--~~~~ 160 (217)
-.+..|+.=.+..+++.... +|+|+.- +.=. .+-+.-+=|||+|+++....|-- ....+. ...+
T Consensus 55 ----Ge~~FR~~E~~~l~~l~~~~~~VIstGGG~v~~~-~~~~-~L~~~g~vv~L~~~~~~~~~R~~-~~~~RPll~~~~ 127 (172)
T PRK05057 55 ----GEEGFRDREEKVINELTEKQGIVLATGGGSVKSR-ETRN-RLSARGVVVYLETTIEKQLARTQ-RDKKRPLLQVDD 127 (172)
T ss_pred ----HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH-HHHH-HHHHCCEEEEEECCHHHHHHHHC-CCCCCCCCCCCC
T ss_conf ----4999999999999988547997997898535889-9999-99966958999599899999805-899999798998
Q ss_pred HHHHHHHH-HHHHHHCCCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 69999999-9985610236757853-7997399977898989999999999998
Q gi|254780457|r 161 YVKILEDL-RNRDNQDRNRSYCPLV-RDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 161 ~~ev~~~i-~~RD~~D~~R~~sPL~-~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
..+.++++ .+|. |+. ...| +.|||++++++++++.|++++++
T Consensus 128 ~~~~~~~l~~~R~---------~~Y~~~Ad-~~I~td~~~~~~i~~~Ii~~L~~ 171 (172)
T PRK05057 128 PREVLEALANERN---------PLYEEIAD-VTVRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HHHHHHHHHHHHH---------HHHHHHCC-EEEECCCCCHHHHHHHHHHHHHC
T ss_conf 7999999999999---------99998699-99989999999999999999960
No 30
>PRK13808 adenylate kinase; Provisional
Probab=99.24 E-value=3.7e-10 Score=81.57 Aligned_cols=174 Identities=24% Similarity=0.329 Sum_probs=99.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|.|-+=||+||||||.|+.|+++||+.||+||-|.|..- ..+-.+... .+.+ ++.-+|-.++|
T Consensus 1 MrIIlLGPPGsGKGTQA~~L~~~~gi~hISTGDmLR~aI----~~~T~LG~k------aK~i----m~~G~LVPDeI--- 63 (297)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAV----AAGTPVGLK------AKDI----MASGGLVPDEV--- 63 (297)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHH----HCCCHHHHH------HHHH----HHCCCCCCHHH---
T ss_conf 959997899998589999999986988675869999999----759987999------9999----97669888899---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHHHHH-----HCC----CCEEEEEECCHHH---HHHHHHHHHHH
Q ss_conf 11122057899998878888763038846206--4125566-----303----8868998448888---99998667765
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTII-----FPD----ARIKFYVTASLDI---RARRRYNEMVS 154 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDigTvV-----fPd----A~~KifL~As~e~---RA~RR~~el~~ 154 (217)
.+..|++.|.+. .+..|+|+|| |-+.--- +-+ =|+=|+|..+.++ |...|+.|...
T Consensus 64 -----Vi~lI~erL~~~-----d~~~GfILDGFPRTv~QAEaLD~~L~~~g~~LD~VIel~Vdd~~Lv~RI~~R~~e~~a 133 (297)
T PRK13808 64 -----VVGIISDRIEQP-----DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA 133 (297)
T ss_pred -----HHHHHHHHHCCC-----CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf -----999999996685-----6678987228999989999999999818999786899767889999999988887761
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCCCCC---CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 211135699999999985610236757853---79973999778989899999999999
Q gi|254780457|r 155 RGEKVDYVKILEDLRNRDNQDRNRSYCPLV---RDKDAYFFDTSEMDIGTMCKVAKGLI 210 (217)
Q Consensus 155 ~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~---~a~DAi~IDTs~lsi~ev~~~i~~~I 210 (217)
.|+.+--++--+.+..|=.. .+...+||. ...+-+.-=-.-++|+||...|-...
T Consensus 134 ~Ge~~R~DDn~E~~~kRL~~-Y~~qT~Pl~~yY~e~~~L~~VDGm~~IDeVt~~I~r~l 191 (297)
T PRK13808 134 RGEEVRADDTPEVLAKRLAS-YRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVL 191 (297)
T ss_pred CCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 48878889999999999999-99820125999871695786228660999999999999
No 31
>PRK01184 hypothetical protein; Provisional
Probab=99.23 E-value=9.5e-10 Score=79.15 Aligned_cols=174 Identities=25% Similarity=0.346 Sum_probs=103.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|+|.+-|+.||||||+|+ +.+++||++++.|-+-|... .+.+..+..+.. ..+... +|... +.
T Consensus 2 ~iIGlTG~iGSGKstva~-i~~e~G~~vi~~~Divr~~v---~~~g~~~~~~~~-~~~~~~----------lR~~~-G~- 64 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSK-IARELGIPVVVMGDVIREEV---KKRGLPPTDENI-GKVATD----------LRKEL-GM- 64 (183)
T ss_pred EEEEEECCCCCCHHHHHH-HHHHCCCEEEECCHHHHHHH---HHCCCCCCHHHH-HHHHHH----------HHHHH-CC-
T ss_conf 399996899887899999-99977993998607789999---983899977899-999999----------99871-95-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC-CCHHHHHH-----CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 11122057899998878888763038846206-41255663-----0388689984488889999866776521113569
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDG-RDIGTIIF-----PDARIKFYVTASLDIRARRRYNEMVSRGEKVDYV 162 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG-RDigTvVf-----PdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ 162 (217)
..+| +..+ +..++ ..++-+|+|| |-..-+-+ |+. +=+.++|++++|-+|= .++|..-+ .
T Consensus 65 -~~~a-----~~~~-~~i~~--~~~~~~vidgir~~~E~~~~~~~~~~~-~li~V~A~~~~R~eRl----~~R~r~~D-~ 129 (183)
T PRK01184 65 -DAVA-----IRTV-PKIRE--LGSELVVVDGVRGDAEVEYFRKEFEDF-ILVAIHAPPETRFERL----KKRGRSDD-P 129 (183)
T ss_pred -HHHH-----HHHH-HHHHH--CCCCEEEEECCCCHHHHHHHHHHCCCE-EEEEEECCHHHHHHHH----HHCCCCCC-C
T ss_conf -5899-----9999-99970--379828981678789999999746984-9999989888999999----84699889-6
Q ss_pred HHHHHHHHHHHHCCCCCCC-CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999985610236757-853799739997789898999999999999874069
Q gi|254780457|r 163 KILEDLRNRDNQDRNRSYC-PLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDNS 217 (217)
Q Consensus 163 ev~~~i~~RD~~D~~R~~s-PL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~n~ 217 (217)
...++...||.+...-.+. .+..|+ ++|+|+. |+++.-.++.+++++-++|.
T Consensus 130 ~s~e~f~~rd~~E~~~~i~~~i~~AD--~vI~N~g-sleel~~~v~~~l~~i~~~~ 182 (183)
T PRK01184 130 KTWEELRERDERELSWGIGEAIALAD--YMIVNDC-TLEEFKARVRKLLEEILSSR 182 (183)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHCC--EEEECCC-CHHHHHHHHHHHHHHHHHCC
T ss_conf 67999999999874467778998799--9998799-89999999999999997069
No 32
>PRK13949 shikimate kinase; Provisional
Probab=99.23 E-value=1.3e-09 Score=78.36 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=83.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 98666877896789999999817835620289999985232101110146553333210111244444432012100111
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVAS 90 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S 90 (217)
|.+=|+.||||||++|.||++|+|+|+||-.+-=. ..+.++.+... +.
T Consensus 4 I~LiG~mGsGKstiGk~La~~l~~~fiD~D~~Ie~------~~g~sI~eif~--~~------------------------ 51 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLDFFIEN------RFHKTVGDIFA--ER------------------------ 51 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHH------HHCCCHHHHHH--HH------------------------
T ss_conf 89979999988999999999959997978499999------85999999999--86------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC-----HHHHHHCCCCEEEEEECCHHHHHHHHHHHH--HHHHCCCCHHH
Q ss_conf 12205789999887888876303884620641-----255663038868998448888999986677--65211135699
Q gi|254780457|r 91 QVASIDSVRDALIDIQRSFAQNKLGVILDGRD-----IGTIIFPDARIKFYVTASLDIRARRRYNEM--VSRGEKVDYVK 163 (217)
Q Consensus 91 ~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRD-----igTvVfPdA~~KifL~As~e~RA~RR~~el--~~~g~~~~~~e 163 (217)
-.+..|+.=.+..+++....+.+|.=|=- -....+-...+=|||.+++++=.+|=...- .-.-.+.+-++
T Consensus 52 ---Ge~~FR~~E~~~l~~l~~~~~~VistGGG~v~~~~n~~~l~~~g~vV~L~~~~~~l~~Rl~~~~~~RPll~~~~~~e 128 (169)
T PRK13949 52 ---GEAVFRELERNMLHEVAEFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEE 128 (169)
T ss_pred ---CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf ---98999999999999984589839974863115799999999689579998999999999756899999878989899
Q ss_pred HHHH----HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9999----999856102367578537997399977898989999999999
Q gi|254780457|r 164 ILED----LRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGL 209 (217)
Q Consensus 164 v~~~----i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~ 209 (217)
.+.. +.+|.. +..-.| ++|||++++++++++.|++.
T Consensus 129 ~~~~i~~~~~~R~~---------~Y~~A~-~~I~td~~s~~~i~~~Ii~~ 168 (169)
T PRK13949 129 LLDFIIEALEKRAP---------FYRQAK-IIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred HHHHHHHHHHHHHH---------HHHHCC-EEEECCCCCHHHHHHHHHHH
T ss_conf 99999999999999---------999799-89989999999999999972
No 33
>KOG3354 consensus
Probab=99.21 E-value=1.9e-09 Score=77.33 Aligned_cols=169 Identities=17% Similarity=0.280 Sum_probs=97.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC--------CC
Q ss_conf 1898666877896789999999817835620289999985232101110146553333210111244444--------43
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKA--------QL 80 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~l 80 (217)
-+|-+=|+|||||||++|+|+++|+|.|+|. =++.......+..+.+.+++.|-. .+
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg---------------Dd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~ 77 (191)
T KOG3354 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDG---------------DDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVEL 77 (191)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCCC---------------CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 0599983588774459999999858862455---------------5579878899883699888532117999999999
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEE-EEEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 201210011112205789999887888876303884620641255663038868-9984488889999866776521113
Q gi|254780457|r 81 SSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIK-FYVTASLDIRARRRYNEMVSRGEKV 159 (217)
Q Consensus 81 r~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~K-ifL~As~e~RA~RR~~el~~~g~~~ 159 (217)
+-..-+..-+.+|. ..|...-|++... ..-+|| -.-.|++.++ +||.||.|+=++|- ..+....
T Consensus 78 ~~~l~~~q~vVlAC-----SaLKk~YRdILr~---sl~~gk---~~~~~~~~l~fi~l~~s~evi~~Rl----~~R~gHF 142 (191)
T KOG3354 78 RKALASGQGVVLAC-----SALKKKYRDILRH---SLKDGK---PGKCPESQLHFILLSASFEVILKRL----KKRKGHF 142 (191)
T ss_pred HHHHHCCCEEEEEH-----HHHHHHHHHHHHH---HCCCCC---CCCCCCCEEEEEEEECCHHHHHHHH----HHCCCCC
T ss_conf 98763278189972-----8888999999973---211478---6678640588863304299999998----4066666
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5699999999985610236757853799739997789898999999999999874
Q gi|254780457|r 160 DYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 160 ~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
.-.+.+++-.. + -..|-..-+|-+-|+-...++++.++.|.+-+...+
T Consensus 143 Mp~~lleSQf~----~---LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~~~~ 190 (191)
T KOG3354 143 MPADLLESQFA----T---LEAPDADEEDIVTISVKTYSVEEIVDTIVKMVALNI 190 (191)
T ss_pred CCHHHHHHHHH----H---CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 88789998887----5---269999824668886034789999999999998533
No 34
>PRK13947 shikimate kinase; Provisional
Probab=99.21 E-value=1.5e-09 Score=78.04 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=85.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 98666877896789999999817835620289999985232101110146553333210111244444432012100111
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVAS 90 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S 90 (217)
|.+=|+.||||||++|.||++|+++|+|+-.+--. ..+.++.+.. +....
T Consensus 4 I~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie~------~~g~sI~eIf---~~~GE--------------------- 53 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEIEK------MAGMTVSEIF---EKDGE--------------------- 53 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH------HCCCCHHHHH---HHHCH---------------------
T ss_conf 89979999988999999999979698987499998------8299889999---98489---------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-------CCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHC--CCCH
Q ss_conf 1220578999988788887630-------388462064125566303886899844888899998667765211--1356
Q gi|254780457|r 91 QVASIDSVRDALIDIQRSFAQN-------KLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGE--KVDY 161 (217)
Q Consensus 91 ~iA~~p~VR~~l~~~Qr~~~~~-------~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~--~~~~ 161 (217)
...|+.=.+..+++... .+|+|+.-.-+ ..+-..-+=|||++++++=.+| ......+.- ..+.
T Consensus 54 -----~~FR~~E~~~l~~~~~~~~~VistGGG~v~~~~n~--~~l~~~g~vi~L~~~~~~l~~R-l~~~~~RPll~~~~~ 125 (171)
T PRK13947 54 -----VRFRSLEKAAVRKAARLKNLVIATGGGVVLNPENI--VQLRKNGVLICLVARPEVILRR-IKKKKDRPLLMVGNP 125 (171)
T ss_pred -----HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH--HHHHHCCEEEEECCCHHHHHHH-HHCCCCCCCCCCCCH
T ss_conf -----99999999999974036897997898500699999--9999689899973999999999-728999997989987
Q ss_pred HHHHHH-HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999999-9998561023675785379973999778989899999999999987406
Q gi|254780457|r 162 VKILED-LRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDN 216 (217)
Q Consensus 162 ~ev~~~-i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~n 216 (217)
.+.+.+ +.+|. |+.... .+.|||++++++|++++|++.+.+ ++|
T Consensus 126 ~~~l~~l~~~R~---------~~Y~~A-d~~I~~~~~s~~ei~~~Ii~~~~k-~kn 170 (171)
T PRK13947 126 EERIRELLKERE---------PFYRFA-DFTIDTSDMTIDEVAEEIIKAYIK-LKN 170 (171)
T ss_pred HHHHHHHHHHHH---------HHHHHC-CEEEECCCCCHHHHHHHHHHHHHH-HCC
T ss_conf 999999999999---------999976-989889989999999999999997-208
No 35
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.20 E-value=1.8e-09 Score=77.50 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=98.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHH
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112--4444443201210
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLS--NLDKAQLSSNAIA 86 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~lr~~~I~ 86 (217)
++|+|-|+.||||||+|+.+.+ +||+++|+..+.|.+-. .+..... .....+...+..+ .+|...|+..--+
T Consensus 3 ~~IgiTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~----~~~~~~~-~i~~~fg~~i~~~~g~idr~~L~~~vF~ 76 (199)
T PRK00081 3 LIIGLTGGIGSGKSTVANIFAE-LGVPVIDADKIAHQVLE----PGGPALE-AIVEHFGSEILLADGELDRRKLRERVFS 76 (199)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCCEEEHHHHHHHHHH----HCHHHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf 8999578887779999999998-89939963799999997----0759999-9999853631377787569999999867
Q ss_pred CCC--CCC--CHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH-HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 011--112--20578999988788887630388462064125-5663038868998448888999986677652111356
Q gi|254780457|r 87 NVA--SQV--ASIDSVRDALIDIQRSFAQNKLGVILDGRDIG-TIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDY 161 (217)
Q Consensus 87 ~~~--S~i--A~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDig-TvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~ 161 (217)
.-. ..+ =.+|.||..+..+-.......+-+|+|..=.- +-....-|.-+|++|+.++|-+|- ......+.
T Consensus 77 d~~~~~~Le~iiHP~V~~~i~~~~~~~~~~~~~iv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl-----~~R~~~~~ 151 (199)
T PRK00081 77 NPEERKWLEAILHPLIREEIQEQLQQAESPEKYVVLDIPLLFENGLYKWFDRVLVVDVPPEIQLERL-----MARDGLSE 151 (199)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCHHCCCEEEEEECCHHHHHHHH-----HHCCCCCH
T ss_conf 9899999999877999999999999864699789994316765360120785799986999999999-----97489989
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999998561023675785379973999778989899999999999987406
Q gi|254780457|r 162 VKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDN 216 (217)
Q Consensus 162 ~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~n 216 (217)
+++..-+ .+-..+..+ ...| | ++|+|+ -|+++.-.++.+++++-++.
T Consensus 152 ~~~~~r~-~~Q~~~~~k----~~~a-D-~vI~N~-~s~e~l~~qi~~il~~i~~~ 198 (199)
T PRK00081 152 EEAEAIL-ASQMSREEK----LARA-D-DVIDNN-GDLEDLRKQVERLLAELLKL 198 (199)
T ss_pred HHHHHHH-HHCCCHHHH----HHHC-C-EEEECC-CCHHHHHHHHHHHHHHHHHC
T ss_conf 9999999-958998999----9969-9-999899-99999999999999999961
No 36
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.18 E-value=4.5e-09 Score=75.08 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=81.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 98666877896789999999817835620289999985232101110146553333210111244444432012100111
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVAS 90 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S 90 (217)
|-+=|+.||||||++|.||++|||+|+|+-.+--.- .+.++.+.... . ..
T Consensus 5 I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~~------~g~sI~eif~~--~-Ge--------------------- 54 (172)
T PRK03731 5 LFLVGPRGCGKTTVGMALAQALGYRFVDTDLWLQST------LQMTVAEIVER--E-GW--------------------- 54 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHH------HCCCHHHHHHH--H-CH---------------------
T ss_conf 899889999889999999998599979786999988------39899999998--3-98---------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHH------HHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHH--HHHHHH--CCCC
Q ss_conf 12205789999887888876------3038846206412556630388689984488889999866--776521--1135
Q gi|254780457|r 91 QVASIDSVRDALIDIQRSFA------QNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYN--EMVSRG--EKVD 160 (217)
Q Consensus 91 ~iA~~p~VR~~l~~~Qr~~~------~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~--el~~~g--~~~~ 160 (217)
+..|+.=....+++. ...+|+|+.-.- -..+-+.-+-|||+|++++=.+|-.. +...+. ..-+
T Consensus 55 -----~~FR~~E~~~l~~l~~~~~VIstGGG~v~~~~n--~~~L~~~g~vv~L~~~~~~l~~Rl~~~~~~~~RPll~~~~ 127 (172)
T PRK03731 55 -----AGFRARESAALEAVTAPSTVVATGGGIILTEEN--RAFMRNNGIVIYLCAPVSVLANRLEADPEEDQRPTLTGKP 127 (172)
T ss_pred -----HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH--HHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf -----999999999999842788289807864268999--9999968999999799999999981387789898788998
Q ss_pred H-HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6-99999999985610236757853799739997789898999999999999874
Q gi|254780457|r 161 Y-VKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 161 ~-~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
. +++.+-+.+|. |+...-.-++||++ .+++++++.|++.+++.|
T Consensus 128 ~~~~i~~l~~~R~---------~~Y~~~a~~ii~~~-~~~~~i~~~Il~~L~e~i 172 (172)
T PRK03731 128 LSEEVAEVLAERD---------ALYREVAHHIIDAT-QPPSQVVSEILSALAQSI 172 (172)
T ss_pred HHHHHHHHHHHHH---------HHHHHHCCEEECCC-CCHHHHHHHHHHHHHHHC
T ss_conf 7999999999999---------99998489988798-999999999999873219
No 37
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=99.18 E-value=4e-11 Score=87.39 Aligned_cols=114 Identities=25% Similarity=0.341 Sum_probs=65.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 66687789678999999981783562028999998523210111014655333321011124444443201210011112
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVASQV 92 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S~i 92 (217)
+=||+||||||.|+.||++||+.|+|||=|+|+.- ..+-.+..+ ++... .++.-+|-.++|
T Consensus 4 ~lGpPGsGKGTQa~~i~~~~gl~HISTGDllR~~~----~~~T~LG~~------~k~y~--y~~~G~LVPD~~------- 64 (232)
T TIGR01351 4 LLGPPGSGKGTQAKRIAEKLGLPHISTGDLLRAAV----KAGTPLGKK------AKEYN--YMDKGELVPDEI------- 64 (232)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHCCHHHHH------HHCCC--CCCCCCCCCHHH-------
T ss_conf 75598987667999999860885020258999998----707977898------73267--200377577899-------
Q ss_pred CHHHHHHHHHHHHHHH--HHHHCCCEEEEC--CCHHHHHH---------CCCCEEEEEECCH-HHHHHH
Q ss_conf 2057899998878888--763038846206--41255663---------0388689984488-889999
Q gi|254780457|r 93 ASIDSVRDALIDIQRS--FAQNKLGVILDG--RDIGTIIF---------PDARIKFYVTASL-DIRARR 147 (217)
Q Consensus 93 A~~p~VR~~l~~~Qr~--~~~~~~g~V~EG--RDigTvVf---------PdA~~KifL~As~-e~RA~R 147 (217)
.+.-|++.|.+.+.. + ++..|+|+|| |-++=.-+ ..=+.=|+|.-+- ++=.+|
T Consensus 65 -v~~lv~~rl~~~~~~~~~-~~~~GfILDGfPRT~~QAeaL~~~l~~~g~~~d~V~~L~vp~~e~l~~R 131 (232)
T TIGR01351 65 -VNQLVKERLQQNPDCVSL-KSENGFILDGFPRTLSQAEALDAMLKELGLPIDAVIELDVPDLEELVER 131 (232)
T ss_pred -HHHHHHHHHHCCCCCEEE-EECCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
T ss_conf -999999997456000110-1068626638888789999999999861898417888535879999997
No 38
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.17 E-value=2.4e-09 Score=76.69 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=83.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC----C
Q ss_conf 555881898666877896789999999817835620289999985232101110146553333210111244444----4
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKA----Q 79 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~ 79 (217)
|+.+.+|+. |+|||||||+++.||++|||+|+|--- +.......+....+.+++.|-. .
T Consensus 1 ~~~~a~VVm--GVsGsGKSTvg~~LA~~L~~~fiegDd---------------~Hp~~Ni~KM~~GiPL~D~DR~pWL~~ 63 (176)
T PRK09825 1 MAGESYILM--GVSGSGKSLIGSKIAALFSAKFIDGDD---------------LHPAKNIDKMSQGIPLTDEDRLPWLER 63 (176)
T ss_pred CCCCEEEEE--ECCCCCHHHHHHHHHHHHCCCEECCCC---------------CCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 998579998--289899899999999995987762344---------------378989999868999886679999999
Q ss_pred CCCH---HH-HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 3201---21-0011112205789999887888876303884620641255663038868998448888999986677652
Q gi|254780457|r 80 LSSN---AI-ANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 80 lr~~---~I-~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~ 155 (217)
|+.. .. ......+| =..|....|++... --|+- .=+||.++.++=++|- ..+
T Consensus 64 l~~~~~~~~~~~~~~Vva-----CSALK~~YRd~Lr~--------------~~~~v-~fv~L~g~~~~i~~Rl----~~R 119 (176)
T PRK09825 64 LNDASYSLYKKNETGFIV-----CSSLKKQYRDILRK--------------SSPNV-HFLWLDGDYETILARM----QRR 119 (176)
T ss_pred HHHHHHHHHHCCCCEEEE-----EHHHHHHHHHHHHC--------------CCCCE-EEEEEECCHHHHHHHH----HHC
T ss_conf 999999999649982997-----18867999999974--------------79987-9999718999999999----746
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 111356999999999856102367578537997399977898989999999999998
Q gi|254780457|r 156 GEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 156 g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
.....-.+.+.+-.. . -.-|..--.|.+.||-+. +++++++.+...+.-
T Consensus 120 ~gHFMp~~LL~SQf~----t---LE~P~~dE~~v~~idi~~-~~e~iv~~~~~al~a 168 (176)
T PRK09825 120 AGHFMPPDLLQSQFD----A---LERPCADEHDIARIDVNH-DIENVTEQCRQAVQA 168 (176)
T ss_pred CCCCCCHHHHHHHHH----H---HCCCCCCCCCEEEEECCC-CHHHHHHHHHHHHHH
T ss_conf 037999799998999----8---179998889869997899-999999999999999
No 39
>PRK08356 hypothetical protein; Provisional
Probab=99.17 E-value=2.5e-09 Score=76.66 Aligned_cols=178 Identities=22% Similarity=0.306 Sum_probs=95.6
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHH-HHHHC--------CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 555881898666877896789999999817835620289999985-23210--------111014655333321011124
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAK-NILDA--------GISLDDEKMAIKIAQNIVLSN 74 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~-~~~~~--------~~~~~~~~~~~~~~~~i~~~~ 74 (217)
|-.++|||+|-|+.||||||+|+.+ +++||.+++.|-.-|-+-- ..... ...+.. ..+....
T Consensus 1 ~~~~kmIIgitG~~gSGK~tva~~l-~~~G~~~~s~sd~lrd~~~~~~~~~~~~~e~~~~~e~tr-e~l~~~~------- 71 (195)
T PRK08356 1 MGVEKMIVGIAGKIAAGKTTVAKFL-EELGFCRISCSEPLIDILTGNVSDYSWVPEVPFKGEPTR-ENLIELG------- 71 (195)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHH-HHCCCEEEECCHHHHHHHHCCCCCCCCHHHHHHCCCCCH-HHHHHHH-------
T ss_conf 9975269998589988789999999-986992884227899998402320001155551479988-9999999-------
Q ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC-CCHHHH-HHCCC-CEEEEEECCHHHHHHHHHHH
Q ss_conf 4444432012100111122057899998878888763038846206-412556-63038-86899844888899998667
Q gi|254780457|r 75 LDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG-RDIGTI-IFPDA-RIKFYVTASLDIRARRRYNE 151 (217)
Q Consensus 75 ~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG-RDigTv-VfPdA-~~KifL~As~e~RA~RR~~e 151 (217)
..||...=. ..+ ++..+.+ ++....+|+|| |-.+-+ .|-.. ..=|++.|+++.|-+|-
T Consensus 72 ---~~LR~~~G~---~i~-----a~~~~~~-----i~~~~~vVIdgiR~~~Eve~lk~~~~~lI~V~A~~~~R~eRl--- 132 (195)
T PRK08356 72 ---RYLKEKYGE---DIL-----IRLAVDK-----LRHCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERL--- 132 (195)
T ss_pred ---HHHHHHHCC---HHH-----HHHHHHH-----HHCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHH---
T ss_conf ---999998692---589-----9999999-----744897899489988999999965997999967787899999---
Q ss_pred HHHHHCCCCH-HHHHHHHHHHHHHCCC-CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7652111356-9999999998561023-67578537997399977898989999999999998
Q gi|254780457|r 152 MVSRGEKVDY-VKILEDLRNRDNQDRN-RSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 152 l~~~g~~~~~-~ev~~~i~~RD~~D~~-R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
..+|..-+- ..-.++..+||..... -..+-+..--| ++|+|+. |+++-..++-+++++
T Consensus 133 -~~Rgr~~D~~~~s~e~fl~~d~~e~~~~~~~~~i~~AD-y~I~N~g-tleel~~~i~~il~~ 192 (195)
T PRK08356 133 -RRRGAEKDRGIKSLEDLLKFDEWEEKLYQTTKLKDKAD-YVIVNEG-TLEELRKKVEEILRE 192 (195)
T ss_pred -HHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCC-EEEECCC-CHHHHHHHHHHHHHH
T ss_conf -97689888650429999986488886048788998799-9998299-899999999999998
No 40
>PRK02496 adk adenylate kinase; Provisional
Probab=99.17 E-value=1.4e-09 Score=78.19 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=87.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 88189866687789678999999981783562028999998523210111014655333321011124444443201210
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIA 86 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~ 86 (217)
+++++ =||+||||||.|+.||++|||.|++||-+.|... +.+-.+.. ..+.. ++.-.|-.+++
T Consensus 2 ~riil--lG~PGSGKgTqa~~L~~~~~~~his~GdllR~~~----~~~s~lg~------~i~~~----i~~G~lvpd~i- 64 (185)
T PRK02496 2 ARLIF--LGPPGAGKGTQAVVLAEHLQIPHISTGDILRQAI----TEQTPLGI------KAQGY----VDSGELVPDQL- 64 (185)
T ss_pred EEEEE--ECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHH----HCCCHHHH------HHHHH----HHCCCCCCCHH-
T ss_conf 18999--7999999899999999996997788889999998----74998899------99999----98799677288-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHHHHH-----HCC----CCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 0111122057899998878888763038846206--4125566-----303----8868998448888999986677652
Q gi|254780457|r 87 NVASQVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTII-----FPD----ARIKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 87 ~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDigTvV-----fPd----A~~KifL~As~e~RA~RR~~el~~~ 155 (217)
....+.+.+. +- ....|+|+|| |.+.-.. +.. -++=|||+++.++-.+|- .+ +
T Consensus 65 -------v~~li~~~l~----~~-~~~~g~ilDGfPR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl-~~---R 128 (185)
T PRK02496 65 -------VLGLVQERLQ----QP-DAANGWILDGFPRNVTQAAFLDELLQEINQSGDRVVNLDVPDDVIVERL-LA---R 128 (185)
T ss_pred -------HHHHHHHHHH----CC-CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH-HC---C
T ss_conf -------9999999984----84-5338778868988578899999999970567303333049999999998-74---6
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC---CC-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 1113569999999998561023675785379---97-39997789898999999999999
Q gi|254780457|r 156 GEKVDYVKILEDLRNRDNQDRNRSYCPLVRD---KD-AYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 156 g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a---~D-Ai~IDTs~lsi~ev~~~i~~~I~ 211 (217)
|..-+-++ .+.+|= ...+..+.|+... .+ .+.||.+ .++++|++.|.+.+.
T Consensus 129 ~R~DD~~e---~i~~Rl-~~y~~~t~pvi~~y~~~~~~~~Idg~-~~ieeV~~~I~~~l~ 183 (185)
T PRK02496 129 GRKDDTEE---VIRRRL-EVYREQTAPLIDYYRDRQKLLTIDGN-QSVEAVTTRLKAALA 183 (185)
T ss_pred CCCCCCHH---HHHHHH-HHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHHHHC
T ss_conf 76789889---999999-99999999999999846978999899-998999999999863
No 41
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=99.13 E-value=6.5e-10 Score=80.12 Aligned_cols=164 Identities=13% Similarity=0.190 Sum_probs=86.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-----------EEECCHHHHHHHHHHHH----CCCCH-----HHHHHHHHHHHH
Q ss_conf 89866687789678999999981783-----------56202899999852321----01110-----146553333210
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFH-----------YLDTGLIYRAVAKNILD----AGISL-----DDEKMAIKIAQN 69 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~-----------~ldtG~~YR~~a~~~~~----~~~~~-----~~~~~~~~~~~~ 69 (217)
+|+|.|||||||||+|+.|++.|+-. |+.+=..|+.....-.. .+.++ .|.....+....
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~~ 80 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFKE 80 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98998998571999999999996605877641243179860410244375767651457889789662359999999999
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH--HHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 1112444444320121001111220578999988788887630388462064125--56630388689984488889999
Q gi|254780457|r 70 IVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIG--TIIFPDARIKFYVTASLDIRARR 147 (217)
Q Consensus 70 i~~~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDig--TvVfPdA~~KifL~As~e~RA~R 147 (217)
+.-...-..-.++-...... .. .......+=+|+||==.- ..+-+--|+|||++++.++|-.|
T Consensus 81 Lk~g~~i~~P~Ydf~~~~r~--------------~~-~~~i~p~~viIvEGi~~l~~~~ir~l~D~kIfid~~~d~rl~R 145 (196)
T pfam00485 81 LKEGGSGDKPIYNHVTGEAD--------------PW-PELIEGADILFIEGLHGLYDERVAQLLDLKIYVDPDIDLELIQ 145 (196)
T ss_pred HHCCCCEEEEEEECCCCCCC--------------CC-CEECCCCCEEEEECHHHCCCHHHHHHHCEEEEEECCCCHHHHH
T ss_conf 70899457656751345336--------------77-3661788569994333303277887638479972680199999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 8667765211135699999999985610236757853799739
Q gi|254780457|r 148 RYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAY 190 (217)
Q Consensus 148 R~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi 190 (217)
|..--... ..-+.+.|+.+...| .-+..+=+.|.+.-.|-+
T Consensus 146 Ri~RD~~e-Rgrs~~~v~~q~~~v-~p~~~~fI~P~k~~ADli 186 (196)
T pfam00485 146 KIQRDMAE-RGHSLEGVTDSIERR-KPDYVNYICPQFSYADLI 186 (196)
T ss_pred HHHHCHHH-HCCCHHHHHHHHHHH-HHHHHHHCCCCHHHCCEE
T ss_conf 98734575-199999999999997-253896474785229889
No 42
>pfam01202 SKI Shikimate kinase.
Probab=99.08 E-value=1.6e-08 Score=71.86 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 77896789999999817835620289999985232101110146553333210111244444432012100111122057
Q gi|254780457|r 17 AAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASID 96 (217)
Q Consensus 17 agsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S~iA~~p 96 (217)
-||||||++|.||++|||+|+|+-.+.... .+.++.+... +.. .+
T Consensus 1 mGsGKstigk~LA~~L~~~fiD~D~~ie~~------~g~si~eif~--~~G---------------------------e~ 45 (158)
T pfam01202 1 MGAGKTTIGRLLAKALGLPFIDTDQEIEKR------TGMSIAEIFE--EEG---------------------------EE 45 (158)
T ss_pred CCCCHHHHHHHHHHHHCCCEEECHHHHHHH------HCCCHHHHHH--HHC---------------------------HH
T ss_conf 989779999999999699978872999988------7889999999--819---------------------------89
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCC-----HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH--CCCC-HHHHHHHH
Q ss_conf 89999887888876303884620641-----2556630388689984488889999866776521--1135-69999999
Q gi|254780457|r 97 SVRDALIDIQRSFAQNKLGVILDGRD-----IGTIIFPDARIKFYVTASLDIRARRRYNEMVSRG--EKVD-YVKILEDL 168 (217)
Q Consensus 97 ~VR~~l~~~Qr~~~~~~~g~V~EGRD-----igTvVfPdA~~KifL~As~e~RA~RR~~el~~~g--~~~~-~~ev~~~i 168 (217)
..|+.=....+++....+.+|.-|-- -....+.+..+-|||++++++-++|=-.. ..+. ...+ .+.+.+-+
T Consensus 46 ~FR~~E~~~l~~l~~~~~~VIstGGG~v~~~~~~~~L~~~g~vi~L~~~~~~i~~Rl~~~-~~RPll~~~~~~~~~~~l~ 124 (158)
T pfam01202 46 GFRRLESEVLKELLAEHNAVIATGGGAVLSEENRDLLRENGIVVYLDADPEVLLERLKAD-KTRPLLQDKDPEEELLELL 124 (158)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHH
T ss_conf 999999999999971699499807860258999999995792799849999999997179-9999898998799999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9985610236757853799739997789898999999999999
Q gi|254780457|r 169 RNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 169 ~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
.+|. |+...-.-+.|||+.++++++++.|++.++
T Consensus 125 ~~R~---------~~Y~~~a~~~i~~~~~~~~ei~~~Ii~~l~ 158 (158)
T pfam01202 125 FERC---------PLYEEAADIVVDTDESSPEEVAEEILEALE 158 (158)
T ss_pred HHHH---------HHHHHHCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9999---------999986999987999999999999999759
No 43
>PRK06696 uridine kinase; Validated
Probab=99.04 E-value=2.2e-09 Score=76.93 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=85.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC---C--CEEECCHHHHHHHHHHHHCCCCHH-------HHH-HHHHHHHHCCC
Q ss_conf 5881898666877896789999999817---8--356202899999852321011101-------465-53333210111
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYG---F--HYLDTGLIYRAVAKNILDAGISLD-------DEK-MAIKIAQNIVL 72 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~---~--~~ldtG~~YR~~a~~~~~~~~~~~-------~~~-~~~~~~~~i~~ 72 (217)
.++++|+||||+||||||+|+.|+..|+ . ..+...-+|+.-.........+.. |.. +...+..-+.-
T Consensus 24 ~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~r~~~g~~~~~~~~~d~~D~~~l~~~ll~pL~~ 103 (227)
T PRK06696 24 TRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVIRYRRGRESARGYYEDAYDYTAFRELLLKPLGP 103 (227)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 98689997789987879999999999974699489971544347377776516677443475410589999999866315
Q ss_pred CCCCCCCCC----CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-EEEECCCHHHHHHCC-CCEEEEEECCHHHHHH
Q ss_conf 244444432----0121001111220578999988788887630388-462064125566303-8868998448888999
Q gi|254780457|r 73 SNLDKAQLS----SNAIANVASQVASIDSVRDALIDIQRSFAQNKLG-VILDGRDIGTIIFPD-ARIKFYVTASLDIRAR 146 (217)
Q Consensus 73 ~~~~~~~lr----~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g-~V~EGRDigTvVfPd-A~~KifL~As~e~RA~ 146 (217)
+ .....+ .......+ . . +...+ .+.+ +|+||==...--+++ -|+++||+++.++|.+
T Consensus 104 -~-~~~~~~~~~~D~~td~~~---~------~-----~~~~~-p~~~VlIveG~~ll~~elr~~~D~~v~ld~~~~~~~~ 166 (227)
T PRK06696 104 -N-GDRQYRTASHDLKTDIPV---H------N-----EPLMA-APNAVLIVDGTFLLRKELRDLWDYKIFLDTDFEESRR 166 (227)
T ss_pred -C-CCCEEEECCCCCCCCCCC---C------C-----CCEEC-CCCCEEEEECHHHCCHHHHHCCCEEEEEECCHHHHHH
T ss_conf -8-980584112463357545---6------8-----71646-9980899925564665577307489999799999988
Q ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCC---CCCCCCCCCCCEEEEECCCCC
Q ss_conf 986677652-1113569999999998561023---675785379973999778989
Q gi|254780457|r 147 RRYNEMVSR-GEKVDYVKILEDLRNRDNQDRN---RSYCPLVRDKDAYFFDTSEMD 198 (217)
Q Consensus 147 RR~~el~~~-g~~~~~~ev~~~i~~RD~~D~~---R~~sPL~~a~DAi~IDTs~ls 198 (217)
|+...-... | +.+++.+.-..|=.--.. ..++|...|+ ++||+++..
T Consensus 167 R~~~Rd~~~~g---~~~~~~~~~~~ry~pa~~~Y~~~~~P~~~Ad--vvv~n~d~~ 217 (227)
T PRK06696 167 RGAKRDTEAFG---SYEEAEKMYLERYHPACKLYIDEHNPKECAD--VVFDNSDPA 217 (227)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCE--EEEECCCCC
T ss_conf 76653254416---8378999999876389999864168378385--999799989
No 44
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.01 E-value=9.4e-08 Score=67.23 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=79.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC---CCEEEC-----CHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCC
Q ss_conf 5881898666877896789999999817---835620-----289999985232101--110146553333210111244
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYG---FHYLDT-----GLIYRAVAKNILDAG--ISLDDEKMAIKIAQNIVLSNL 75 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~---~~~ldt-----G~~YR~~a~~~~~~~--~~~~~~~~~~~~~~~i~~~~~ 75 (217)
+|.|.|+|+|+-||||||.+++|+++|. +..+-| ..+...+--.++... .++..+.+++.....-.+...
T Consensus 1 mkG~fIviEGiDGsGKsTq~~~L~~~L~~~g~~v~~t~eP~~t~~g~~ir~~~~~~~~~~~~~~~~lLf~adR~~~~~~~ 80 (204)
T PRK00698 1 MRGMFITIEGIDGAGKSTQIELLAERLEEQGRDVVFTREPGGTPLGEKLRELLLDPNEPMDDKTELLLFLAARAQHLEEV 80 (204)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98319999889999899999999999996799789986999980699999998277767998999999999999999999
Q ss_pred CCCCCCCHH--H-HCC-CCCCCH----HHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 444432012--1-001-111220----57899998878888763038846206412556630388689984488889999
Q gi|254780457|r 76 DKAQLSSNA--I-ANV-ASQVAS----IDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARR 147 (217)
Q Consensus 76 ~~~~lr~~~--I-~~~-~S~iA~----~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~R 147 (217)
-.+.|.... | +++ .|.+|= ...=.+++..+.+.+. -.|..|+=|||++++++..+|
T Consensus 81 I~p~L~~g~iVI~DRy~~S~~aYqg~~~~~~~~~i~~l~~~~~----------------~~~~PDl~i~Ldv~~e~~~~R 144 (204)
T PRK00698 81 IKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLAALNRFAL----------------GGFRPDLTLYLDVPPEVGLAR 144 (204)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHH----------------CCCCCCEEEEEECCHHHHHHH
T ss_conf 9988836998998364050999998607999999999998872----------------799998589981799999999
Q ss_pred HHHHHHHHHCCCCHHH--HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8667765211135699--999999985610236757853799739997789898999999999999874
Q gi|254780457|r 148 RYNEMVSRGEKVDYVK--ILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 148 R~~el~~~g~~~~~~e--v~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
.-.. ++.-.+++ +-.-.+-|+.= .+.+. .-+...++||.+ .++++|.+.|+++|+..|
T Consensus 145 i~~R----~~~dr~e~~~~~~~~kv~~~Y---~~l~~-~~~~~~~~IDa~-~~~eeV~~~I~~~i~~~l 204 (204)
T PRK00698 145 IAAR----GELDRIEQEGLDFFERVREGY---LELAA-ADPERIVVIDAS-QSLEEVHEDILAVLKAWL 204 (204)
T ss_pred HHHC----CCCCCHHHHHHHHHHHHHHHH---HHHHH-HCCCCEEEEECC-CCHHHHHHHHHHHHHHHC
T ss_conf 9837----986420150099999999999---99998-588968998499-999999999999999649
No 45
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.01 E-value=5.7e-10 Score=80.45 Aligned_cols=136 Identities=14% Similarity=0.124 Sum_probs=65.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHC--CCCHHHH-----HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89866687789678999999981783-562028999998523210--1110146-----553333210111244444432
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFH-YLDTGLIYRAVAKNILDA--GISLDDE-----KMAIKIAQNIVLSNLDKAQLS 81 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~-~ldtG~~YR~~a~~~~~~--~~~~~~~-----~~~~~~~~~i~~~~~~~~~lr 81 (217)
||+|-|+|||||||+|+.|.+.|+-. .|.--.+|+-....-.+. ..+++.. ....+....+.-.+.-...++
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~~~~iI~qDdyYk~~~~~~~~~~~~~NfDhP~AiD~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 98996888875999999999987998897154467884327621305768767012058999999999994897643101
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHH------CCCCEEEEEECCHHHHHHHHHH
Q ss_conf 01210011112205789999887888876303884620641255663------0388689984488889999866
Q gi|254780457|r 82 SNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIF------PDARIKFYVTASLDIRARRRYN 150 (217)
Q Consensus 82 ~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVf------PdA~~KifL~As~e~RA~RR~~ 150 (217)
+....+........-............. ...+=+++|| .-+| .--|+|+|++|+.++|-+||..
T Consensus 81 s~~~~~~~~~~~~~~~~~~~r~~~~~~~-~p~~iiIvEG----~ll~~~~~lr~l~DlkiFvd~~~d~~l~RR~~ 150 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGA-EDLHILIVDG----FLLYNYKPLVDLFDIRYFLRVPYETCKRRREA 150 (187)
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCC-CCCEEEEEEC----HHHCCCHHHHHHCCEEEEEECCHHHHHHHHHC
T ss_conf 3343566775674102221120001146-8964999917----78719899998639679996999999999752
No 46
>TIGR01360 aden_kin_iso1 adenylate kinase; InterPro: IPR006267 Members of this family are adenylate kinase, 2.7.4.3 from EC. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (IPR006266 from INTERPRO), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in IPR006259 from INTERPRO.; GO: 0004017 adenylate kinase activity, 0005524 ATP binding, 0046034 ATP metabolic process, 0005737 cytoplasm.
Probab=98.99 E-value=3.2e-09 Score=75.99 Aligned_cols=175 Identities=22% Similarity=0.320 Sum_probs=109.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
Q ss_conf 89866687789678999999981783562028999998523210111014655333321011124444443201210011
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVA 89 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~ 89 (217)
||=|=|-+||||+|.|-+|-.||||.||+||-|-|. .+.-..+ . -+..+.|= |=+.+|
T Consensus 5 IiFivGGPGSGKGTQC~KiV~KYGfTHLSsGdLLR~--------Ev~SgS~-r-g~~L~aiM------------e~G~LV 62 (191)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSSGDLLRE--------EVASGSE-R-GKQLQAIM------------ESGELV 62 (191)
T ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH--------HHCCCCC-H-HHHHHHHH------------HCCCCC
T ss_conf 688865888884013689886418864540678898--------7415781-1-47899998------------618855
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--C------CHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 1122057899998878888763038846206--4------1255663038868998448888999986677652111356
Q gi|254780457|r 90 SQVASIDSVRDALIDIQRSFAQNKLGVILDG--R------DIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDY 161 (217)
Q Consensus 90 S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--R------DigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~ 161 (217)
|.=-....+|++|+. ..-...+|+.+|| | .=+..| -+|+|=+|++|+.++=.+|=..--...+-+ --
T Consensus 63 p~~~VL~Ll~dAm~~---~~~~GskGFLIDGYPRev~QG~eFe~~I-~~a~L~Ly~d~s~dTmv~RLL~Ra~~S~vk-R~ 137 (191)
T TIGR01360 63 PLDVVLDLLKDAMLA---ALGKGSKGFLIDGYPREVKQGEEFEKRI-APAKLVLYFDCSEDTMVKRLLKRAETSGVK-RV 137 (191)
T ss_pred CCHHHHHHHHHHHHH---HHCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCEEEEEECCHHHHHHHHHHHHHHCCCC-CC
T ss_conf 506689999999998---6248986311268733201124567515-996346430004447999999987624799-88
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC---CCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999998561023675785---37997399977898989999999999998
Q gi|254780457|r 162 VKILEDLRNRDNQDRNRSYCPL---VRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 162 ~ev~~~i~~RD~~D~~R~~sPL---~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
++-.+-|++|=+. ..|...|. ..++.-+.==|-+=++++||..++..|++
T Consensus 138 DDn~~TI~kRL~t-y~~~t~pvi~yYe~kg~~~~iNAEG~vddvF~~vv~~lD~ 190 (191)
T TIGR01360 138 DDNEKTIKKRLET-YYKATEPVIAYYESKGKLLKINAEGTVDDVFLQVVAALDK 190 (191)
T ss_pred CCCHHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 9887899999999-8850288998617887157742778775899999997426
No 47
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.98 E-value=3.8e-10 Score=81.55 Aligned_cols=40 Identities=40% Similarity=0.508 Sum_probs=36.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHH
Q ss_conf 1898666877896789999999817835620289999985
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAK 48 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~ 48 (217)
|.|.|-||+||||||.|+.||++|++.|+|||-+||+--.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~ 40 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIA 40 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHC
T ss_conf 9799989999988999999999769978552201111003
No 48
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.97 E-value=5.8e-09 Score=74.44 Aligned_cols=116 Identities=19% Similarity=0.317 Sum_probs=64.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|.|-+=||+||||||.|+.||++|++.|++||-|.|.... .+-.+... .+.+ ++.-+|-.+++.
T Consensus 1 M~iillGpPGsGKgT~a~~l~~~~~~~hiStGdllR~~i~----~~t~lg~~------ik~~----i~~G~LVpD~iv-- 64 (225)
T PTZ00088 1 MKIVLFGAPGVGKGTFAEILSKKEKLKHINMGNILRDEIK----KESNIGKE------IHKV----VRSGNLVADELI-- 64 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHH----CCCHHHHH------HHHH----HHCCCCCCHHHH--
T ss_conf 9799989999987999999999879906878999999997----39988999------9999----977984668999--
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHHHHH----HCCCCEEEEEECCHHHHHHH
Q ss_conf 11122057899998878888763038846206--4125566----30388689984488889999
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTII----FPDARIKFYVTASLDIRARR 147 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDigTvV----fPdA~~KifL~As~e~RA~R 147 (217)
...|.+.|.+...+- ....|+++|| |.+.-.- +-+-++-++|..+.++=..|
T Consensus 65 ------~~lv~~~l~~~~~~~-~~~~GfILDGfPRt~~QA~~L~~~~~id~vi~l~v~~~~li~R 122 (225)
T PTZ00088 65 ------IKIVHDEIAKILAKD-GHFKGFILDGFPRNLLQCKELIEITNIDLFVNIHLPRHILIKK 122 (225)
T ss_pred ------HHHHHHHHHHHHCCC-CCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf ------999999998444246-4347436527888779999999746788799996689999999
No 49
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.97 E-value=4.2e-08 Score=69.33 Aligned_cols=173 Identities=16% Similarity=0.206 Sum_probs=83.5
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97655588189866687789678999999981783562028999998523210111014655333321011124444443
Q gi|254780457|r 1 MGRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQL 80 (217)
Q Consensus 1 m~~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 80 (217)
|.--....-+|-+=|+|||||||+++.||++|||.|+|.--+-=.-.-.-...|+.++|+...-=+. .+. ..-....
T Consensus 1 ~~~~~~~~~iiVVMGVsGsGKSTig~~LA~~l~~~fiegDdfHp~~Ni~KM~~GiPLtD~DR~pWL~-~l~--~~~~~~~ 77 (177)
T PRK11545 1 MSTTNHDHHIYVLMGVSGSGKSAVASAVAHQLHAAFLDGDFLHPRCNIEKMASGEPLNDDDRKPWLQ-ALN--DAAFAMQ 77 (177)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHH-HHH--HHHHHHH
T ss_conf 9656788759999847989999999999998199855365558999999862899998688899999-999--9999997
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20121001111220578999988788887630388462064125566303886899844888899998667765211135
Q gi|254780457|r 81 SSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVD 160 (217)
Q Consensus 81 r~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~ 160 (217)
+..... .++-=|-...-|+.| ... -|+- .=+||.++.++=++| ... +.....
T Consensus 78 ~~~~~~-VlaCSALKr~YRd~L--------r~~--------------~~~~-~fv~L~g~~~~i~~R-l~~---R~~HFm 129 (177)
T PRK11545 78 RTNKVS-LIVCSALKKHYRDLL--------REG--------------NPNL-SFIYLKGDFDVIESR-LKA---RKGHFF 129 (177)
T ss_pred CCCCCE-EEEECCCCHHHHHHH--------HHC--------------CCCE-EEEEECCCHHHHHHH-HHH---CCCCCC
T ss_conf 269966-998701119999999--------806--------------9975-999972999999999-974---646899
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 6999999999856102367578537997399977898989999999999998
Q gi|254780457|r 161 YVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 161 ~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
-.+.+.+-.+ . -..|...-.|++.||-+. +++++++.+++.+++
T Consensus 130 p~~LL~SQf~----t---LE~P~~~E~~~~~vdi~~-~~e~iv~~il~~l~~ 173 (177)
T PRK11545 130 KTQMLVTQFE----T---LQEPGADETDVLVVDIDQ-PLEGVVASTIEVIKK 173 (177)
T ss_pred CHHHHHHHHH----H---HCCCCCCCCCEEEEECCC-CHHHHHHHHHHHHHC
T ss_conf 8789998999----8---179998889869997899-999999999999975
No 50
>KOG3079 consensus
Probab=98.97 E-value=4.1e-08 Score=69.35 Aligned_cols=177 Identities=19% Similarity=0.276 Sum_probs=98.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 58818986668778967899999998178356202899999852321011101465533332101112444444320121
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAI 85 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I 85 (217)
.+..||=+=|++||||+|++.+++++|+|.||++|-+-|+-.-.. . ++. ....+++.-+
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~-----g-se~---g~~I~~~i~~------------ 64 (195)
T KOG3079 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA-----G-SER---GALIKEIIKN------------ 64 (195)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCEEECHHHHHHHHHCCC-----C-CHH---HHHHHHHHHC------------
T ss_conf 579889997689888226999999976954632879999988054-----6-767---8999999986------------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHH------HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 00111122057899998878888763038846206--4125------566303886899844888899998667765211
Q gi|254780457|r 86 ANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIG------TIIFPDARIKFYVTASLDIRARRRYNEMVSRGE 157 (217)
Q Consensus 86 ~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDig------TvVfPdA~~KifL~As~e~RA~RR~~el~~~g~ 157 (217)
-.+.....+...|.+-.++.... .++++|| |-.- ..+--++++-+|++|+.++=.+|= ....+.+.
T Consensus 65 ----G~iVP~ei~~~LL~~am~~~~~~-~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rl-l~R~q~~~ 138 (195)
T KOG3079 65 ----GDLVPVEITLSLLEEAMRSSGDS-NGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRL-LHRGQSNS 138 (195)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH-HHHCCCCC
T ss_conf ----99674899999999999965778-8388658988768899999885678777999868889999999-96066578
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCC---CCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 135699999999985610236757853---7997399977898989999999999998
Q gi|254780457|r 158 KVDYVKILEDLRNRDNQDRNRSYCPLV---RDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 158 ~~~~~ev~~~i~~RD~~D~~R~~sPL~---~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
--++=.++|++|=.-- +....|.. ..++-+.==..+-+.++||..+...|+.
T Consensus 139 --R~DDn~esikkR~et~-~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079 139 --RSDDNEESIKKRLETY-NKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred --CCCCCHHHHHHHHHHH-HHCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf --7887557799999999-870018999987359688751779878899999987403
No 51
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.96 E-value=1e-07 Score=67.04 Aligned_cols=187 Identities=16% Similarity=0.231 Sum_probs=105.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 58818986668778967899999998178356202899999852321011101465533332101112444444320121
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAI 85 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I 85 (217)
..+++|-|-|+||+||||+|-.||.+||+..+=+.-+-|.+=-.+......+.=..-....-+.+.....+..+
T Consensus 90 ~~pliILigGtsGvGKSTlA~~LA~rLgI~~visTD~IREVmR~~~~~el~P~Lh~SSy~Awk~l~~~~~~~~~------ 163 (306)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPWEEPD------ 163 (306)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCHHHCCCHHHHHCCCCCCCCCHH------
T ss_conf 99879998589988789999999997098834222169999985248301751322751310023678778657------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCC---------C-CEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 001111220578999988788887630388462064125566303---------8-868998448888999986677652
Q gi|254780457|r 86 ANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPD---------A-RIKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 86 ~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPd---------A-~~KifL~As~e~RA~RR~~el~~~ 155 (217)
-......+-..|...+........+...++|+||= ++.|. + -+=|.|+.+-+..-+.||.+.-..
T Consensus 164 -~I~Gf~~Q~~~V~~gI~aiI~Ra~~eg~slIIEGV----HlvP~~i~~~~~~~~~vi~fll~i~dEe~H~~RF~~Ra~~ 238 (306)
T PRK04220 164 -HILGFERHVEPVLVGVEAVIERALKEGISVIIEGV----HIVPGFIKEKYLNMPNVFMFVLTLSDEETHKARFYARARV 238 (306)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----CCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCC
T ss_conf -99999999999999999999999972996899843----0377887777643883899999978889999999985044
Q ss_pred HCCCC---HHHHHHHHHHHHHHCC----CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11135---6999999999856102----367578537997399977898989999999999998740
Q gi|254780457|r 156 GEKVD---YVKILEDLRNRDNQDR----NRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 156 g~~~~---~~ev~~~i~~RD~~D~----~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
. .-. |-+=..+| |+.+|. .+++ +.=+|||+ +++++++.+++.|-+++.
T Consensus 239 ~-~R~~~rYl~~f~~I--R~IQ~yLv~~A~~~-------~vPiI~N~--~id~tv~~i~~~i~~r~~ 293 (306)
T PRK04220 239 S-KRPAERYLKHFDEI--REIQDYIVEKAKEH-------GVPVIENV--SIEETVDKILEIITERLS 293 (306)
T ss_pred C-CCCHHHHHHHHHHH--HHHHHHHHHHHHHH-------CCCEECCC--CHHHHHHHHHHHHHHHHH
T ss_conf 7-89878999979999--99999999998880-------99810686--689999999999999999
No 52
>pfam00406 ADK Adenylate kinase.
Probab=98.94 E-value=5.9e-09 Score=74.41 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=61.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 66877896789999999817835620289999985232101110146553333210111244444432012100111122
Q gi|254780457|r 14 DGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVASQVA 93 (217)
Q Consensus 14 DGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S~iA 93 (217)
=||+||||||.|++||++|||.|++||-+.|... +.+-.+.. ..+.+.-.+ ++-.+++
T Consensus 2 ~G~PGsGKgTqa~~La~~~~~~~is~GdllR~~~----~~~s~~g~------~i~~~i~~G----~lvpd~i-------- 59 (186)
T pfam00406 2 LGPPGAGKGTQAERIVQKYGIVHLSTGDLLRAEV----KSGTELGK------EAKEYMDKG----ELVPDEV-------- 59 (186)
T ss_pred CCCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHH----HCCCHHHH------HHHHHHHCC----CCCCHHH--------
T ss_conf 1889898599999999985990676999999998----62887999------999999869----9543099--------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHHHHHH-----C---CCCEEEEEECCHHHHHHHHHH
Q ss_conf 057899998878888763038846206--41255663-----0---388689984488889999866
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTIIF-----P---DARIKFYVTASLDIRARRRYN 150 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDigTvVf-----P---dA~~KifL~As~e~RA~RR~~ 150 (217)
....+.+.|. +-. ...|+|+|| |.+.-.-+ . .-++=|||+++.++--+|-..
T Consensus 60 ~~~l~~~~l~----~~~-~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~Vi~l~~~~~~~~~Rl~~ 121 (186)
T pfam00406 60 VVGLVKERLE----QND-CKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLTG 121 (186)
T ss_pred HHHHHHHHHC----CCC-CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHC
T ss_conf 9999999970----745-5486687379898999999999997499877799997378999999976
No 53
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=98.94 E-value=1.3e-08 Score=72.44 Aligned_cols=174 Identities=11% Similarity=0.060 Sum_probs=84.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE-------EECCHHHHHHHHH----HHH-CC-CCHHHHHHHHHHHHHCC
Q ss_conf 55881898666877896789999999817835-------6202899999852----321-01-11014655333321011
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHY-------LDTGLIYRAVAKN----ILD-AG-ISLDDEKMAIKIAQNIV 71 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~-------ldtG~~YR~~a~~----~~~-~~-~~~~~~~~~~~~~~~i~ 71 (217)
..++++|+|.||+||||||+|+.|+..|+-.. +..--+|..-+.+ ... .| +.--|.....++...+.
T Consensus 31 ~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH~~~~~L~~~~~~~rkGaP~TFD~~~l~~~L~~Lk 110 (230)
T PRK09270 31 PQRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFHLDNAVLDARGLRARKGAPETFDVAGLAELLRRLR 110 (230)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99718999989998899999999999986237998579973653345725554354743379910216988999999985
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC----CHH--HHHHCCCCEEEEEECCHHHHH
Q ss_conf 12444444320121001111220578999988788887630388462064----125--566303886899844888899
Q gi|254780457|r 72 LSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGR----DIG--TIIFPDARIKFYVTASLDIRA 145 (217)
Q Consensus 72 ~~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGR----Dig--TvVfPdA~~KifL~As~e~RA 145 (217)
- + ...+.-+.-+..... | ..-...+....+=+|+||= |-+ ..+-+--|+++|++|+.+++-
T Consensus 111 ~-~--~~~v~~P~yD~~~~d----~------~~~~~~i~~~~~IVIvEGnyLLld~~~W~~l~~~~D~~ifvd~~~~~~~ 177 (230)
T PRK09270 111 E-G--DCEVYWPVFDRQLED----P------VADAIVVGPTARLVIVEGNYLLLDDEPWRRLAGFFDFSIFLDAPAEVLR 177 (230)
T ss_pred C-C--CCCEEECCCCCCCCC----C------CCCCEEECCCCCEEEEECEEEECCCCCHHHHHHHHCEEEEEECCHHHHH
T ss_conf 6-8--971752134322457----7------8895366699868999344761378328999986376799848999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
Q ss_conf 99866776521113569999999998561023675785379973999778
Q gi|254780457|r 146 RRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTS 195 (217)
Q Consensus 146 ~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs 195 (217)
+|....-...| .+.+++..-....|.-... -+-|-....| ++|+.+
T Consensus 178 ~Rli~R~~~~G--~s~e~a~~r~~~nD~pN~~-~V~~~~~~aD-~vi~~~ 223 (230)
T PRK09270 178 ERLVARKLAGG--LSPEAARAFYLRNDGPNAR-LVLETSRPAD-LVLEMT 223 (230)
T ss_pred HHHHHHHHHCC--CCHHHHHHHHHHCCCCHHH-HHHHCCCCCC-EEEEEC
T ss_conf 99999998729--9999999999716610799-9985798898-899956
No 54
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.94 E-value=4.8e-08 Score=68.94 Aligned_cols=169 Identities=13% Similarity=0.191 Sum_probs=101.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCC-----CEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 558818986668778967899999998178-----356202899999852321011101465533332101112444444
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGF-----HYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQ 79 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~-----~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (217)
..+.++|=+-|-|||||||+|+.|..+|.= .++=-|--.|. .+.++..++.+....+.-+-- ..-..
T Consensus 389 ~~~G~tiwlTGLsgsGKsTiA~al~~~L~~~~~~~v~lLDGD~~R~----~l~~dLgfs~~dR~enirR~~----~va~~ 460 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMAKLMEMRGRPVTLLDGDVVRK----HLSSELGFSKEDRDLNILRIG----FVASE 460 (568)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHCCCCCCCHHHHHHHHHHHH----HHHHH
T ss_conf 4586499984578887769999999999971892799954688874----215578989889999999999----99999
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 32012100111122057899998878888763038846206412556630388689984488889999866776521113
Q gi|254780457|r 80 LSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKV 159 (217)
Q Consensus 80 lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~ 159 (217)
+-..-+--++|.||-..+.|.+.- +++.+..+ =+-+|+.|++++-.+|=-+.|-++-
T Consensus 461 ~~~~g~i~i~a~isP~~~~R~~~r----~~~~~~~~----------------f~ev~v~~ple~c~~RD~KGlY~ka--- 517 (568)
T PRK05537 461 ITKNGGIAICAPIAPYRATRREVR----EMIEAFGA----------------FIEVYVATPIEVCEQRDRKGLYKKA--- 517 (568)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHH----HHHCCCCC----------------EEEEEECCCHHHHHHCCCCHHHHHH---
T ss_conf 985897899950699979999999----98523797----------------7999978989999772861177898---
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 569999999998561023675785379973-999778989899999999999987
Q gi|254780457|r 160 DYVKILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 160 ~~~ev~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
..=...+.+=--+|.-.|.++ ++|||+.++++|.+++|+.+.+++
T Consensus 518 ---------~~G~i~~ftGi~~pye~P~~pdl~idt~~~~~~~~v~~ii~~L~~~ 563 (568)
T PRK05537 518 ---------REGKIKEFTGISDPYEPPANPELVIDTTNITPDECAHKILLYLEEE 563 (568)
T ss_pred ---------HCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf ---------5799789866899999999980798789999999999999999976
No 55
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.93 E-value=8.4e-09 Score=73.50 Aligned_cols=110 Identities=25% Similarity=0.362 Sum_probs=61.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 98666877896789999999817835620289999985232101110146553333210111244444432012100111
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVAS 90 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S 90 (217)
|-+=||+||||||+|++||++|||.|+++|-+.|.... .+-.+.. ..+... +.-.+-.+++
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~is~gdlLR~~~~----~~t~~g~------~i~~~~----~~G~lvp~~i----- 62 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIA----SGTELGK------KAKEYI----DSGKLVPDEI----- 62 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHH----CCCHHHH------HHHHHH----HCCCCCCHHH-----
T ss_conf 89989999987999999999979846768899999997----4995899------999999----8799778999-----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHHHHHHC--------CCCEEEEEECCHHHHHHH
Q ss_conf 122057899998878888763038846206--412556630--------388689984488889999
Q gi|254780457|r 91 QVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTIIFP--------DARIKFYVTASLDIRARR 147 (217)
Q Consensus 91 ~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDigTvVfP--------dA~~KifL~As~e~RA~R 147 (217)
....+++.|. +.. ...|+|+|| |.+.-..+= .-+.=|+|+++.++-.+|
T Consensus 63 ---~~~l~~~~l~----~~~-~~~g~ilDGfPR~~~Qa~~l~~~~~~~~~~~~vi~l~~~~~~~~~R 121 (194)
T cd01428 63 ---VIKLLKERLK----KPD-CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIER 121 (194)
T ss_pred ---HHHHHHHHHH----CCC-CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
T ss_conf ---9999999984----765-4387787479798999999999997399878899996689999999
No 56
>PRK07667 uridine kinase; Provisional
Probab=98.92 E-value=3.5e-09 Score=75.77 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=27.7
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 76555881898666877896789999999817
Q gi|254780457|r 2 GRLESQSIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 2 ~~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.+-+...++|+|||++||||||+|+.|++.|+
T Consensus 8 ~~~~~~r~iIgIaG~sgSGKTTla~~L~~~l~ 39 (190)
T PRK07667 8 KKHKENRFILGIDGLSRSGKTTFVANLKENMK 39 (190)
T ss_pred HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 85759869999779897889999999999986
No 57
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=98.91 E-value=2.2e-08 Score=71.03 Aligned_cols=148 Identities=14% Similarity=0.263 Sum_probs=83.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC-----CCEEECCHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHCCCCCCCCCC
Q ss_conf 881898666877896789999999817-----8356202899999852321011101--465533332101112444444
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYG-----FHYLDTGLIYRAVAKNILDAGISLD--DEKMAIKIAQNIVLSNLDKAQ 79 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~-----~~~ldtG~~YR~~a~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~ 79 (217)
|+.+|=|-|.|||||||+|+.|.++|. ..+|| |--.|. .+..+..++ +..........+ ...
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LD-GD~~R~----~l~~dlgys~~~R~~n~~r~~~l------ak~ 69 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQGISVYVLD-GDNVRH----GLNKDLGFSEEDRTENIRRIAEV------AKL 69 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHC----CCCCCCCCCHHHHHHHHHHHHHH------HHH
T ss_conf 9889998898999999999999999997599779976-887750----12577798989999999999999------999
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf 32012100111122057899998878888763038846206412556630388-68998448888999986677652111
Q gi|254780457|r 80 LSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDAR-IKFYVTASLDIRARRRYNEMVSRGEK 158 (217)
Q Consensus 80 lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~-~KifL~As~e~RA~RR~~el~~~g~~ 158 (217)
|...-+.-.+|.+|..+++|++..+ .+|++. +-||+.|++++..+|=-+.+-++..
T Consensus 70 l~~~g~~VIvs~isp~~~~R~~~r~----------------------~~~~~~y~EIyv~~~le~~~~RD~KglY~ka~- 126 (157)
T pfam01583 70 FADAGLIVITSFISPYRADRDMARE----------------------LHEDGKFIEVFVDTPLEVCEQRDPKGLYKKAR- 126 (157)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHH----------------------HCCCCCEEEEEECCCHHHHHHCCCHHHHHHHH-
T ss_conf 8428965887215789999999998----------------------64788579999638678877516210677876-
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCCH
Q ss_conf 3569999999998561023675785379973-9997789898
Q gi|254780457|r 159 VDYVKILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDTSEMDI 199 (217)
Q Consensus 159 ~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDTs~lsi 199 (217)
.-...+..=-..|.-.|.++ ++|||+.+|+
T Consensus 127 -----------~g~i~n~~Gid~~ye~P~~pdl~idt~~~sv 157 (157)
T pfam01583 127 -----------AGEIKGFTGIDSPYEAPENPELVLDTTKLSV 157 (157)
T ss_pred -----------CCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf -----------3877886206779999989868996897759
No 58
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.91 E-value=7.2e-08 Score=67.91 Aligned_cols=50 Identities=26% Similarity=0.438 Sum_probs=35.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 98666877896789999999817835620289999985232101110146
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE 60 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~ 60 (217)
|-+=|+|||||||+|+.||+++|+.|+++-.+=..........++.++|.
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D~~h~~~n~~km~~G~pL~d~ 51 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDE 51 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 89991899999999999999719956415433547689998679998852
No 59
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.91 E-value=3.3e-08 Score=69.96 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=23.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1898666877896789999999817
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
|.|+|+|+-||||||++++|+++|.
T Consensus 1 m~IviEG~dGsGKsT~~~~L~~~L~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9899989989999999999999999
No 60
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.88 E-value=6.4e-08 Score=68.24 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=95.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHH--------HHHHCCCCHH--HHHHHHHHHHHCCCCCCCC
Q ss_conf 81898666877896789999999817835620289999985--------2321011101--4655333321011124444
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAK--------NILDAGISLD--DEKMAIKIAQNIVLSNLDK 77 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~--------~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~ 77 (217)
.++|++-|-.||||||+|+.+++ +||+.+|.+..-|.+-- .+...|..+- +............+++..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~- 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE- 79 (201)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHH-
T ss_conf 64999957887788999999997-7993998869999988456357899999849976566510589999999738999-
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 44320121001111220578999988788887630388462064125566303--8868998448888999986677652
Q gi|254780457|r 78 AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPD--ARIKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 78 ~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPd--A~~KifL~As~e~RA~RR~~el~~~ 155 (217)
....-.-=.+|.||..+. .+.+...++ -+|+|== .=..-+.+ .+.=+.++|++++|-+| +.++
T Consensus 80 --------~~~~Le~i~hPli~~~~~-~~~~~~~~~-~~~~eip-lL~e~~~~~~~d~Vi~V~a~~e~r~eR----l~~R 144 (201)
T COG0237 80 --------ARLKLEKILHPLIRAEIK-VVIDGARSP-YVVLEIP-LLFEAGGEKYFDKVIVVYAPPEIRLER----LMKR 144 (201)
T ss_pred --------HHHHHHHHHHHHHHHHHH-HHHHHHHCC-CEEEEEH-HHHHHCCCCCCCEEEEEECCHHHHHHH----HHHC
T ss_conf --------999999665589999999-999974167-6388707-888726666688899998999999999----9833
Q ss_pred HCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 1113569999999-998561023675785379973999778989899999999999987
Q gi|254780457|r 156 GEKVDYVKILEDL-RNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 156 g~~~~~~ev~~~i-~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
+ +.+.+++...+ .++|...+ + ..++ ++||++.. +++..+++..++..-
T Consensus 145 ~-~~~~e~~~~~~~~Q~~~~ek-~-----~~ad--~vi~n~~~-i~~l~~~i~~~~~~~ 193 (201)
T COG0237 145 D-GLDEEDAEARLASQRDLEEK-L-----ALAD--VVIDNDGS-IENLLEQIEKLLKEL 193 (201)
T ss_pred C-CCCHHHHHHHHHHCCCHHHH-H-----HHCC--CHHHCCCC-HHHHHHHHHHHHHHH
T ss_conf 7-99999999999873899998-6-----3146--47664877-999999999999999
No 61
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.88 E-value=6.3e-08 Score=68.24 Aligned_cols=29 Identities=38% Similarity=0.752 Sum_probs=26.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 89866687789678999999981783562
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
||+|+|+-||||||+++.||++||+.++-
T Consensus 1 iI~IEGnIG~GKTTl~~~La~~l~~~~~~ 29 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFP 29 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 98996785679999999999985982103
No 62
>PRK13975 thymidylate kinase; Provisional
Probab=98.87 E-value=1.6e-07 Score=65.77 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=48.9
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 30388689984488889999866776521113569-99999999856102367578537997399977898989999999
Q gi|254780457|r 128 FPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYV-KILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVA 206 (217)
Q Consensus 128 fPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~-ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i 206 (217)
.|..|+=|||+.++++-.+|.-..-...-++.+|. .|.+.-.+-=..+..|- ..-.+=++||.+..++++|.+.|
T Consensus 111 ~~~PDlt~~LDi~~e~~l~R~~~r~~~~~e~~~f~~kVr~~yl~la~~~~~r~----~~~~~~i~Id~~~ksieeV~~~I 186 (198)
T PRK13975 111 AKIPDLVVLLDVDLEEALKRMESREKEIFEKIEIQKKIKEGYYNLINSENEKF----MPKYGFIVIDTTSKSIEEVFNEI 186 (198)
T ss_pred CCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHH----CCCCCEEEEECCCCCHHHHHHHH
T ss_conf 99999899973989999998763573155429999999999999997482310----01257189989999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999998740
Q gi|254780457|r 207 KGLIDTKLD 215 (217)
Q Consensus 207 ~~~I~~kl~ 215 (217)
++.|..+|.
T Consensus 187 ~~~i~~~lp 195 (198)
T PRK13975 187 LNAILDKIP 195 (198)
T ss_pred HHHHHHHHH
T ss_conf 999998631
No 63
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.86 E-value=8.7e-08 Score=67.44 Aligned_cols=160 Identities=14% Similarity=0.215 Sum_probs=93.8
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE-----EECCHHHHHHHHHHHHCCCCHHHHHHHH------HHHHHCCC
Q ss_conf 555881898666877896789999999817835-----6202899999852321011101465533------33210111
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGFHY-----LDTGLIYRAVAKNILDAGISLDDEKMAI------KIAQNIVL 72 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~-----ldtG~~YR~~a~~~~~~~~~~~~~~~~~------~~~~~i~~ 72 (217)
++.++++|=.-|+|||||||+|..|+++|--.. || |---| .-+..+..++.+.... +.++-+.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD-GDnvR----~gL~~dLgFs~edR~eniRRvaevAkll~- 92 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD-GDNVR----HGLNRDLGFSREDRIENIRRVAEVAKLLA- 92 (197)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC-CHHHH----HCCCCCCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf 2799859996468888787999999999997597589855-74676----50057889786789999999999999998-
Q ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCC-CEEEEEECCHHHHHHHHHHH
Q ss_conf 24444443201210011112205789999887888876303884620641255663038-86899844888899998667
Q gi|254780457|r 73 SNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDA-RIKFYVTASLDIRARRRYNE 151 (217)
Q Consensus 73 ~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA-~~KifL~As~e~RA~RR~~e 151 (217)
..-+--++|.||...+.|+.. ...+++. =+-+|++|++++..+|--+-
T Consensus 93 ---------daG~iviva~ISP~r~~R~~a----------------------R~~~~~~~FiEVyV~~pl~vce~RDpKG 141 (197)
T COG0529 93 ---------DAGLIVIVAFISPYREDRQMA----------------------RELLGEGEFIEVYVDTPLEVCERRDPKG 141 (197)
T ss_pred ---------HCCEEEEEEEECCCHHHHHHH----------------------HHHHCCCCEEEEEECCCHHHHHHCCCHH
T ss_conf ---------789089997517309999999----------------------9972768628999579899998618257
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 76521113569999999998561023675785379973-99977898989999999999998
Q gi|254780457|r 152 MVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 152 l~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
|-++ -..-.....+=--+|.-+|++. +.+||+..++++.+++|+++...
T Consensus 142 LYkK------------Ar~GeI~~fTGid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 142 LYKK------------ARAGEIKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred HHHH------------HHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999------------9759877875778888899998267506657899999999999985
No 64
>PRK00625 shikimate kinase; Provisional
Probab=98.85 E-value=1.1e-07 Score=66.93 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=77.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHCCCCCCCCCCCCCHHHHC
Q ss_conf 18986668778967899999998178356202899999852321011101-46553333210111244444432012100
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLD-DEKMAIKIAQNIVLSNLDKAQLSSNAIAN 87 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~lr~~~I~~ 87 (217)
|.|.+=|+.||||||++|.||++||++|+||-.+--.-. +..+. .....++...
T Consensus 1 MnI~LIG~mGsGKStiGk~LA~~l~~~FvD~D~~Ie~~~------~~~i~~Si~eIf~~~G------------------- 55 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY------HGALYSSPKEIYQAYG------------------- 55 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHH------CCCCCCCHHHHHHHHC-------------------
T ss_conf 929998999998899999999993999577499999986------8652356999999718-------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHH-------CCCCEEEEEECCHHHHHHHHHHHHHHHHC--C
Q ss_conf 11112205789999887888876303884620641255663-------03886899844888899998667765211--1
Q gi|254780457|r 88 VASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIF-------PDARIKFYVTASLDIRARRRYNEMVSRGE--K 158 (217)
Q Consensus 88 ~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVf-------PdA~~KifL~As~e~RA~RR~~el~~~g~--~ 158 (217)
.+..|+.=.+..+++.. .+++|.=|= |.+.. -+.-+=|||++++++=.+|=- +++. .
T Consensus 56 -------E~~FR~~E~~~l~~l~~-~~~VIstGG--G~v~~~~n~~~Lk~~g~vV~L~~~~e~i~~Rl~----~rpl~~~ 121 (173)
T PRK00625 56 -------EEGFCEEEALALESLPV-IPSIVALGG--GTLMHEESYDHIRNRGLLVLLSLPIATIYQRLQ----KRGLPER 121 (173)
T ss_pred -------HHHHHHHHHHHHHHHCC-CCCEEECCC--CCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHH----CCCCCCC
T ss_conf -------99999999999997324-896897488--501789999999968999998399999999982----6998777
Q ss_pred CCHHHHHHH-HHHHHHHCCCCCCCCCCCCCCEEEEECCCCC------HHHHHHHHHHH
Q ss_conf 356999999-9998561023675785379973999778989------89999999999
Q gi|254780457|r 159 VDYVKILED-LRNRDNQDRNRSYCPLVRDKDAYFFDTSEMD------IGTMCKVAKGL 209 (217)
Q Consensus 159 ~~~~ev~~~-i~~RD~~D~~R~~sPL~~a~DAi~IDTs~ls------i~ev~~~i~~~ 209 (217)
.+-.+-+++ ..+|. +..|+.+. ++|+|++++ +.++++.++.+
T Consensus 122 ~~~~~~l~~l~~eR~--~lY~~~AD-------~iI~~d~~sit~~~~~~~~~~~~~~~ 170 (173)
T PRK00625 122 LKKTPSLEEILTQRI--DRMREIAD-------YIFSLDHVALTSESSLMSACQSFCTL 170 (173)
T ss_pred CCCHHHHHHHHHHHH--HHHHHHCC-------EEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 883579999999999--99999799-------99968997613254499999999999
No 65
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=98.85 E-value=7.3e-08 Score=67.88 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=76.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCCCCCCCCH---
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112--4444443201---
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLS--NLDKAQLSSN--- 83 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~lr~~--- 83 (217)
|||+|-|.-||||||+++.+.+ +|++++|+-.+.+.+- +.+...-. .....+..++... .++...|+.-
T Consensus 1 ~iIgiTG~IgsGKStv~~~l~~-~G~~vidaD~i~~~l~----~~~~~~~~-~i~~~fg~~i~~~~g~idr~~L~~~vF~ 74 (179)
T pfam01121 1 LIVGLTGGIGSGKSTVANLFAD-LGVPIVDADVIARQVV----EPGSPALA-AIVDHFGPDILLADGQLDRRALRELVFS 74 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHH-CCCCEEECHHHHHHHH----HCCHHHHH-HHHHHHCHHHCCCCCCCCHHHHHHHHHC
T ss_conf 9899857864789999999998-7991991809999998----65858999-9999819986077886579999999854
Q ss_pred ------HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH-HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf ------21001111220578999988788887630388462064125-56630388689984488889999866776521
Q gi|254780457|r 84 ------AIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIG-TIIFPDARIKFYVTASLDIRARRRYNEMVSRG 156 (217)
Q Consensus 84 ------~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDig-TvVfPdA~~KifL~As~e~RA~RR~~el~~~g 156 (217)
.+... -+|.||..+...-.+. ..+-+|+|.==+- +-....-|.=++++|+.++|.+| ....
T Consensus 75 d~~~~~~Le~i-----iHP~v~~~~~~~i~~~--~~~~~v~eipLL~E~~~~~~~D~ii~V~a~~~~r~~R-----l~~R 142 (179)
T pfam01121 75 DPEEKQWLNAI-----LHPLIRREMFKQLAQL--TSPYVLLDVPLLFESGLTKLCHRVLVVDAPVELQVER-----LMQR 142 (179)
T ss_pred CHHHHHHHHHH-----HHHHHHHHHHHHHHHC--CCCEEEEECCCHHCCCCCCCCCEEEEEECCHHHHHHH-----HHHC
T ss_conf 87999999986-----2599999999999866--8996999445022067653477599998799999999-----9980
Q ss_pred CCCCHHHHHHH
Q ss_conf 11356999999
Q gi|254780457|r 157 EKVDYVKILED 167 (217)
Q Consensus 157 ~~~~~~ev~~~ 167 (217)
.+.+.+++..-
T Consensus 143 ~~~s~~~~~~~ 153 (179)
T pfam01121 143 DGLSREQVQAI 153 (179)
T ss_pred CCCCHHHHHHH
T ss_conf 59999999999
No 66
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.84 E-value=3.5e-08 Score=69.82 Aligned_cols=159 Identities=13% Similarity=0.229 Sum_probs=93.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC-----CCEEECCHHHHHHHHHHHHCCCCHHHHHHH------HHHHHHCCCCC
Q ss_conf 5881898666877896789999999817-----835620289999985232101110146553------33321011124
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYG-----FHYLDTGLIYRAVAKNILDAGISLDDEKMA------IKIAQNIVLSN 74 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~-----~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~------~~~~~~i~~~~ 74 (217)
-++.+|=+-|+|||||||+|+.|.++|- ..+|| |--.|. -+.....+...... .+.++-+
T Consensus 441 ~~~~~iw~tGlsgsGKstiA~~le~~L~~~g~~~~~LD-Gd~lR~----gl~~dlgf~~~dR~enirR~~eva~l~---- 511 (613)
T PRK05506 441 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYVLD-GDNVRH----GLNRDLGFTDADRVENIRRVAEVARLM---- 511 (613)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHH----
T ss_conf 99769999778989747999999999997799879988-089874----104577979899999999999999999----
Q ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHH
Q ss_conf 4444432012100111122057899998878888763038846206412556630388-689984488889999866776
Q gi|254780457|r 75 LDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDAR-IKFYVTASLDIRARRRYNEMV 153 (217)
Q Consensus 75 ~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~-~KifL~As~e~RA~RR~~el~ 153 (217)
...-+--++|.||...+.|+.. -.++++.+ +-+|+.|++++..+|=-+-|-
T Consensus 512 ------~~aG~i~i~a~iSp~~~~R~~~----------------------r~~~~~~~f~Ev~v~~~le~c~~RDpKglY 563 (613)
T PRK05506 512 ------ADAGLIVLVSFISPFREERELA----------------------RALIGEGEFVEVFVDTPLEVCEARDPKGLY 563 (613)
T ss_pred ------HHCCCEEEEECCCCCHHHHHHH----------------------HHHCCCCCEEEEEEECCHHHHHHCCCHHHH
T ss_conf ------8689889997588998999999----------------------975788878999990899999762955678
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 521113569999999998561023675785379973-999778989899999999999987
Q gi|254780457|r 154 SRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 154 ~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
++ -..=...+.+=--+|.-+|++. ++|||+.+++++.+++++.+++++
T Consensus 564 ~k------------ar~gei~~~tGi~~pYe~P~~p~l~i~t~~~~~~~~~~~i~~~l~~~ 612 (613)
T PRK05506 564 AK------------ARAGEIKNFTGIDSPYEAPENPELRLDTDGRSPEELAEQVLELLRER 612 (613)
T ss_pred HH------------HHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99------------87799788713687889999984797589999999999999999864
No 67
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.83 E-value=4.5e-08 Score=69.11 Aligned_cols=163 Identities=10% Similarity=0.099 Sum_probs=94.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC---EEECCHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89866687789678999999981783---562028999998523210-----1110146553333210111244444432
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFH---YLDTGLIYRAVAKNILDA-----GISLDDEKMAIKIAQNIVLSNLDKAQLS 81 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~---~ldtG~~YR~~a~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~lr 81 (217)
||+|-|.|||||||+++.+.+.|+-. .+.--.+||.=-...... .+.-++.....+..+.+.-...-..-++
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr~dr~~r~~~~~t~~~P~And~dll~~~l~~Lk~Gk~i~~PvY 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98997888786999999999985848769996577788998999871877689752349999999999985995343222
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHH--HHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 01210011112205789999887888876303884620641255--6630388689984488889999866776521113
Q gi|254780457|r 82 SNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGT--IIFPDARIKFYVTASLDIRARRRYNEMVSRGEKV 159 (217)
Q Consensus 82 ~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigT--vVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~ 159 (217)
+...+.. .. + +.+...+=+|+||==... .+---.|+|||++++.++|-.||..--... ..-
T Consensus 81 dh~tg~~----~~-~-----------e~i~p~diII~EGLh~l~~~~lrdl~DLkIfVD~d~dlr~~rKI~RD~~E-RGy 143 (273)
T cd02026 81 NHVTGLI----DP-P-----------ELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAE-RGH 143 (273)
T ss_pred CCCCCCC----CC-C-----------EEECCCCEEEEECEECCCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHH-HCC
T ss_conf 1458965----77-5-----------65068747999220002668898660746885687647999987766766-488
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 5699999999985610236757853799739
Q gi|254780457|r 160 DYVKILEDLRNRDNQDRNRSYCPLVRDKDAY 190 (217)
Q Consensus 160 ~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi 190 (217)
+.++|+.+|..| +-|..+-+.|=+...|.+
T Consensus 144 S~E~V~~~I~rR-~pDy~~yI~PQk~~ADI~ 173 (273)
T cd02026 144 SLEDVLASIEAR-KPDFEAYIDPQKQYADVV 173 (273)
T ss_pred CHHHHHHHHHHH-HHHHHHHCCCCCEEEEEE
T ss_conf 999999999860-478897507575001289
No 68
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.82 E-value=6.7e-08 Score=68.11 Aligned_cols=141 Identities=17% Similarity=0.205 Sum_probs=76.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC--CCCCCCCC-----
Q ss_conf 89866687789678999999981783562028999998523210111014655333321011124--44444320-----
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSN--LDKAQLSS----- 82 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~lr~----- 82 (217)
+|+|-|..||||||+|+.+++ +|++++|+..+++.+.. .+.... ..+...+...+..++ ++...|++
T Consensus 1 iigiTG~igSGKStv~~~l~~-~g~~v~~aD~i~~~l~~----~~~~~~-~~i~~~fg~~~~~~~g~i~r~~L~~~vf~~ 74 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE----PGGPAL-QAIVEAFGPDILLEDGELDRKKLGEIVFAD 74 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCEEEECHHHHHHHHH----CCHHHH-HHHHHHCCCHHCCCCCCCCHHHHHHHHHCC
T ss_conf 988637875789999999998-79909963599999886----076999-999987371302888867599999998669
Q ss_pred ----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH-HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf ----121001111220578999988788887630388462064125-566303886899844888899998667765211
Q gi|254780457|r 83 ----NAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIG-TIIFPDARIKFYVTASLDIRARRRYNEMVSRGE 157 (217)
Q Consensus 83 ----~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDig-TvVfPdA~~KifL~As~e~RA~RR~~el~~~g~ 157 (217)
..+.. -.+|.|+..+...-++... .+-+|+|.-=+- +......|.-++++|+.+.|-+|.... .
T Consensus 75 ~~~~~~Le~-----iihP~v~~~~~~~~~~~~~-~~~vi~evpLL~E~~~~~~~d~ii~V~a~~~~r~~R~~~R-----~ 143 (179)
T cd02022 75 PEKRKKLEA-----ITHPLIRKEIEEQLAEARK-EKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKR-----D 143 (179)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHCCC-CCCEEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHH-----C
T ss_conf 899999985-----7279999999999986303-5633676555420587655775899986868899999980-----2
Q ss_pred CCCHHHHHHH
Q ss_conf 1356999999
Q gi|254780457|r 158 KVDYVKILED 167 (217)
Q Consensus 158 ~~~~~ev~~~ 167 (217)
+.+.+++..-
T Consensus 144 ~~s~~~~~~~ 153 (179)
T cd02022 144 GLSEEEAEAR 153 (179)
T ss_pred CCCHHHHHHH
T ss_conf 9989999999
No 69
>PRK06547 hypothetical protein; Provisional
Probab=98.81 E-value=1.3e-08 Score=72.39 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=74.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
Q ss_conf 189866687789678999999981-7835620289999985232101110146553333210111244444432012100
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEY-GFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIAN 87 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l-~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~ 87 (217)
.+|+|||||||||||+|..|+..+ +..-+..--||.. |. +.......+...+..-+. .+.. ...+.-+=
T Consensus 16 ~iVaIDG~sGaGKTTLA~~La~~~~~~~vvHmDD~Y~G--W~----gl~~~~~~l~~~VL~Pl~-~G~~-~~yr~~DW-- 85 (184)
T PRK06547 16 ITVLIDGRSGSGKTTLAGELAACWEGSQLVHLDDLYPG--WD----GLAAASEHVREALLDPRA-LGRP-GRWRRWDW-- 85 (184)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCC--CC----CCHHHHHHHHHHHHHHHC-CCCC-CEEECCCC--
T ss_conf 99998689988889999999974579828970577777--65----404689999999864641-8997-36606215--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 11112205789999887888876303884620641255663-03886899844888899998667765211135699999
Q gi|254780457|r 88 VASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIF-PDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILE 166 (217)
Q Consensus 88 ~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVf-PdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~ 166 (217)
.....+. .+.+ ....-+|+||=-.++--+ |-+++.+|++++.++|.+| ..+. .|+ |..-.+
T Consensus 86 ~~~~~~~-----------~~~v-~~~~~lIvEGvga~~~~~r~~~d~~IWve~~~~~r~~R-~l~R--DGe---~~~~w~ 147 (184)
T PRK06547 86 ANNCPGG-----------WVTV-EPGRRLIIEGVGALTAANRALADLTVWLEGPEALRKQR-ALTR--DPD---YAPHWD 147 (184)
T ss_pred CCCCCCC-----------CEEC-CCCCCEEEECCCCCCHHHCCCCCEEEEEECCHHHHHHH-HHHC--CCC---HHHHHH
T ss_conf 7899787-----------5673-78881899662315631314123777774898999999-9860--950---269999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 99998561023675785379973999778989
Q gi|254780457|r 167 DLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMD 198 (217)
Q Consensus 167 ~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~ls 198 (217)
.=. ..+...-....|-..|+ ++||+|--.
T Consensus 148 ~W~-~~E~~~fa~~~~~~~AD--~iv~~t~~g 176 (184)
T PRK06547 148 MWA-AQEERHIARYDPRDVAD--LLGSDTASG 176 (184)
T ss_pred HHH-HHHHHHHHCCCCHHHCE--EEEECCCCC
T ss_conf 999-99999985599166081--898379999
No 70
>PRK06217 hypothetical protein; Validated
Probab=98.80 E-value=3.7e-08 Score=69.66 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=93.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
+.|-|=|.|||||||+|+.||.+|+++|+++-.+|= . +.+..+..+
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~~~W----~-------p~~~pf~~k----------------------- 47 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDDFFW----L-------PTDPPFTTK----------------------- 47 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCEE----C-------CCCCCCCCC-----------------------
T ss_conf 679997899887899999999975989686455535----6-------899975643-----------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHH--HHHCCCCEEEEEECCHHHHHHHHHH-HHHHHHCCC----CH
Q ss_conf 1112205789999887888876303884620641255--6630388689984488889999866-776521113----56
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGT--IIFPDARIKFYVTASLDIRARRRYN-EMVSRGEKV----DY 161 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigT--vVfPdA~~KifL~As~e~RA~RR~~-el~~~g~~~----~~ 161 (217)
.-|+-|..+ ++..+. ..++.|++|==.|+ ..+|.+|+=+||+...++|.+|=.. |...-|..+ +.
T Consensus 48 -----R~~~eR~~l--l~~~~~-~~~~WV~sGs~~~wgd~l~p~~DlvVfL~lP~~irl~Rlr~RE~~RyG~ri~pgGdm 119 (185)
T PRK06217 48 -----REPEERLRL--LLEDLR-DSEGWILSGSLLGWGDPLEPLFDLVVFLYIPPELRLERLRLREEQRYGNRILPGGDM 119 (185)
T ss_pred -----CCHHHHHHH--HHHHHH-CCCCEEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf -----799999999--999863-799989957752323211343568999828989999999999998607866899418
Q ss_pred HHHHHHHHH------------HHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999------------8561023675785379973999778989899999999999987
Q gi|254780457|r 162 VKILEDLRN------------RDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 162 ~ev~~~i~~------------RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
.+...+-.+ |-..-..+=.+.+..+ .+-||. .+++++-++.|++.+.+.
T Consensus 120 ~~~~~~Fl~Wa~~YD~~~~~gRsl~~He~Wl~~~~cP--Vlrldg-~~~~~~~~~~vl~~~~~~ 180 (185)
T PRK06217 120 HKASLEFLEWAAQYDNAGPEGRSLAAHEQWLADQSCP--VLRLDG-DLTVEERLAQVLAALNSA 180 (185)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC--EEEECC-CCCHHHHHHHHHHHHHCC
T ss_conf 8888999999986788987764499999999528986--799769-898999999999997425
No 71
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.78 E-value=2.1e-07 Score=65.09 Aligned_cols=144 Identities=22% Similarity=0.301 Sum_probs=74.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 98666877896789999999817835620289999985232101110146553333210111244444432012100111
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVAS 90 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S 90 (217)
|.+=|+.||||||++|.||++|+|+|+||-.+....+ +.++.+... +. +
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie~~~------g~si~eif~--~~-------G---------------- 50 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA------GMSIPEIFA--EE-------G---------------- 50 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHH------CCCHHHHHH--HC-------C----------------
T ss_conf 8998899998899999999997989796859999994------999999998--74-------9----------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH-------HHCCCCEEEEEECCHHHHHHHHHHHHHHHH--CCCCH
Q ss_conf 122057899998878888763038846206412556-------630388689984488889999866776521--11356
Q gi|254780457|r 91 QVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTI-------IFPDARIKFYVTASLDIRARRRYNEMVSRG--EKVDY 161 (217)
Q Consensus 91 ~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTv-------VfPdA~~KifL~As~e~RA~RR~~el~~~g--~~~~~ 161 (217)
.+..|+.=.+...++....+.+|.-|= |.+ .+-+..+=|||.+++++-++|-..+ ..++ ...+.
T Consensus 51 ----e~~FR~~E~~~l~~~~~~~~~VIs~GG--G~v~~~~~~~~l~~~~~vI~L~~~~~~l~~Rl~~~-~~RPll~~~~~ 123 (154)
T cd00464 51 ----EEGFRELEREVLLLLLTKENAVIATGG--GAVLREENRRLLLENGIVVWLDASPEELLERLARD-KTRPLLQDEDP 123 (154)
T ss_pred ----HHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCC-CCCCCCCCCCH
T ss_conf ----387899999999998568985997389--73368999999995790899957999999996079-99998889999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 9999999998561023675785379973999778989899
Q gi|254780457|r 162 VKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGT 201 (217)
Q Consensus 162 ~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~e 201 (217)
+++.+-..+|... ..+. | | +.||+++++++|
T Consensus 124 ~~l~~l~~~R~~~--Y~~~-----A-d-~~i~~~~~s~~e 154 (154)
T cd00464 124 ERLRELLEEREPL--YREV-----A-D-LTIDTDELSPEE 154 (154)
T ss_pred HHHHHHHHHHHHH--HHHH-----C-C-EEEECCCCCCCC
T ss_conf 9999999999999--9987-----9-9-999798989996
No 72
>PRK12338 hypothetical protein; Provisional
Probab=98.78 E-value=1.4e-06 Score=60.27 Aligned_cols=192 Identities=13% Similarity=0.154 Sum_probs=101.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCH
Q ss_conf 5588189866687789678999999981783562028999998523210111014655333321011124-444443201
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSN-LDKAQLSSN 83 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~lr~~ 83 (217)
+.++++|-|-|+||+||||+|-.||.+||...+=+--.-|.+--.++.....+.-..-.....+.+.... .........
T Consensus 1 mr~PliILiGGtSGvGKSTlAseLAsRLgI~tvIsTDsIRevmR~~is~e~~P~L~~STY~A~~~Lr~~~~~~~~~~~~~ 80 (320)
T PRK12338 1 MRKPYVILIGSASGIGKSTIASEVARRLNIKHLIETDFIREVVRGIIGKEYAPALHMSSYNAYTALRDKDHFVPKRFEEL 80 (320)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 99767999706888768889999998519871103347999999833804153455420267887267423577411678
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH------HHCCCCEEEEEECCHHHHHHHHHH----HHH
Q ss_conf 2100111122057899998878888763038846206412556------630388689984488889999866----776
Q gi|254780457|r 84 AIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTI------IFPDARIKFYVTASLDIRARRRYN----EMV 153 (217)
Q Consensus 84 ~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTv------VfPdA~~KifL~As~e~RA~RR~~----el~ 153 (217)
-+. ..-++...|-..+...--.+.....++|+||=-+..- -.+.|.+-||+.++.|.--+-||. ++.
T Consensus 81 vi~---Gfe~q~e~V~~~le~vI~r~~~~~~sivIEGVHLvPgfi~~~~~~~~~~i~F~i~~~~E~kH~eRF~~Rak~m~ 157 (320)
T PRK12338 81 VIA---GFEEHASFVIPAIEKVIKRAVTDADDIVIEGVHLVPGLINIEQFYEYANIHFFILYADEEEHKERFVKRAMEIK 157 (320)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 999---99999899999999999999864886799845305555057662266663699998176899999999998850
Q ss_pred HHHCCCCHHHHHHHHHHHHHHC----CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 5211135699999999985610----23675785379973999778989899999999999987
Q gi|254780457|r 154 SRGEKVDYVKILEDLRNRDNQD----RNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 154 ~~g~~~~~~ev~~~i~~RD~~D----~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
..| .|-+-.++| |-.+| +-+++ +.-.|++++ ++.++.+|+..|.+.
T Consensus 158 r~~---Kyvkyf~ni--R~Iqd~L~~~Adeh-------~iP~I~N~n--id~sV~~i~~~I~~~ 207 (320)
T PRK12338 158 RGG---KHLEYFREN--RIIHDFLVSQADEH-------GIPVIKNDD--IDRTVSKVLSVIREV 207 (320)
T ss_pred CCC---CHHHHHHHH--HHHHHHHHHHHHHC-------CCCCCCCCC--HHHHHHHHHHHHHHH
T ss_conf 265---089999988--99999998416761-------997304763--556899999999987
No 73
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.76 E-value=3.5e-08 Score=69.78 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=76.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----CEEECCHHHHHHHHHHHHCCCCHHH-----HHHHHHHHHHCCCCCCCCCC
Q ss_conf 8986668778967899999998178-----3562028999998523210111014-----65533332101112444444
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGF-----HYLDTGLIYRAVAKNILDAGISLDD-----EKMAIKIAQNIVLSNLDKAQ 79 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~-----~~ldtG~~YR~~a~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~ 79 (217)
+|+|.|||||||||+|+.|++.|+- ..++.-.+|+.....-. .+.++++ .....+....+.-......-
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~~~~~~~~-~~~n~D~p~a~d~~ll~~~L~~L~~g~~v~~P 79 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRD-EDGNYDFESILDLDLLNKNLHDLLNGKEVELP 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98998989778999999999998464885399954666457652000-14688981353499999999999779955754
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCEEEECCC-HHHHHHCCCCEEEEEECCHHH-HHHHHHH-HHHHH
Q ss_conf 3201210011112205789999887888876303-884620641-255663038868998448888-9999866-77652
Q gi|254780457|r 80 LSSNAIANVASQVASIDSVRDALIDIQRSFAQNK-LGVILDGRD-IGTIIFPDARIKFYVTASLDI-RARRRYN-EMVSR 155 (217)
Q Consensus 80 lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~-~g~V~EGRD-igTvVfPdA~~KifL~As~e~-RA~RR~~-el~~~ 155 (217)
.++-..... .. . ......+ +=+|+||== .--.+-+--|+|+|+++..+. |-.||.. +...+
T Consensus 80 ~YDf~t~~r---~~----------~--~~~~~~p~~vIIvEGi~~l~~~lr~~~D~kIfvd~~~~~~Rl~RRi~RD~~eR 144 (179)
T cd02028 80 IYDFRTGKR---RG----------Y--RKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFR 144 (179)
T ss_pred EEECCCCCC---CC----------C--CEEEECCCCEEEEECHHHCCHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 200437860---69----------8--05960899789992434389989976686999978836888899999779773
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 11135699999999985610236757853799739997
Q gi|254780457|r 156 GEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFD 193 (217)
Q Consensus 156 g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~ID 193 (217)
|. +.++++.+- +-......-+.|-....|.++++
T Consensus 145 g~--~~~~v~~q~--~~~p~~~~~i~p~~~~a~~iv~n 178 (179)
T cd02028 145 GY--SAELTILMW--PSVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred CC--CHHHHHHHH--CCCCCCHHHCCCCCHHCCEEEEC
T ss_conf 99--999999986--22688355328971217987408
No 74
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.75 E-value=4.6e-08 Score=69.08 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=92.7
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 66687789678999999981783562028999998523210111014655333321011124444443201210011112
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVASQV 92 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S~i 92 (217)
+=||+||||||.|.+|.++|+|.|||.|-|-|+--. +.|=... .......+ ++.-.+ |.|
T Consensus 4 vLGGPGSGKGTQCa~Iv~~f~~~HLSAGDLLR~E~~---R~GSe~g--~lI~~~Ik----eG~IVP-----------s~V 63 (189)
T TIGR01359 4 VLGGPGSGKGTQCAKIVENFGYVHLSAGDLLRAEIK---REGSENG--ELIESYIK----EGKIVP-----------SEV 63 (189)
T ss_pred EECCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHH---HCCCCCC--CHHHHHHH----CCCEEH-----------HEE
T ss_conf 636989875678999998539468807478899861---0478885--03774411----583111-----------223
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEC--C----CHHHH-HHCC--CCEE----EEEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 2057899998878888763038846206--4----12556-6303--8868----9984488889999866776521113
Q gi|254780457|r 93 ASIDSVRDALIDIQRSFAQNKLGVILDG--R----DIGTI-IFPD--ARIK----FYVTASLDIRARRRYNEMVSRGEKV 159 (217)
Q Consensus 93 A~~p~VR~~l~~~Qr~~~~~~~g~V~EG--R----DigTv-VfPd--A~~K----ifL~As~e~RA~RR~~el~~~g~~~ 159 (217)
. .. .|.+..++..-+.+.+.+|| | --|+. ++|+ ++++ +||+|+-++=.+|=..--+..|..
T Consensus 64 T-v~----LL~kai~~~~W~~~~FLIDGFPRN~eN~~~W~~~~P~~kv~~~~alVlF~dC~e~~m~~R~l~Rg~~SGR~- 137 (189)
T TIGR01359 64 T-VE----LLKKAIKEDGWSSKKFLIDGFPRNEENLEAWEKLMPDNKVNVKFALVLFFDCPEEVMIKRLLKRGQTSGRV- 137 (189)
T ss_pred E-HH----HHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCC-
T ss_conf 2-45----88877763156788236625788887888898617877612026789998679714764431478947861-
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCC---CCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 5699999999985610236757853---7997399977898989999999999
Q gi|254780457|r 160 DYVKILEDLRNRDNQDRNRSYCPLV---RDKDAYFFDTSEMDIGTMCKVAKGL 209 (217)
Q Consensus 160 ~~~ev~~~i~~RD~~D~~R~~sPL~---~a~DAi~IDTs~lsi~ev~~~i~~~ 209 (217)
++=.++|++|=.. .+-..-|-. ...+=+..=.+.-++|+|++.|.++
T Consensus 138 --DDN~esl~KR~~~-y~~~t~piIe~f~~~~kv~~i~a~~~ve~Vf~~v~~~ 187 (189)
T TIGR01359 138 --DDNIESLKKRFRT-YNEETLPIIEYFENKGKVKEINAEGSVEEVFEDVEKI 187 (189)
T ss_pred --CCCHHHHHHHHHH-HHCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf --0717788888665-4016830210000279579827999988999999997
No 75
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.74 E-value=4.7e-07 Score=63.05 Aligned_cols=157 Identities=20% Similarity=0.310 Sum_probs=84.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
+.|..=|+.|+||||++|.||+.||++|+||-..--.- .+.++.+... ...
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~------~g~sI~eIF~---~~G-------------------- 53 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR------TGMSIAEIFE---EEG-------------------- 53 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH------HCCCHHHHHH---HHH--------------------
T ss_conf 61899717999776899999998199802246999999------7969999999---982--------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHH-------HCCCCEEEEEECCHHHHHHHHHHHHHHHH--CCC
Q ss_conf 111220578999988788887630388462064125566-------30388689984488889999866776521--113
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTII-------FPDARIKFYVTASLDIRARRRYNEMVSRG--EKV 159 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvV-------fPdA~~KifL~As~e~RA~RR~~el~~~g--~~~ 159 (217)
-...|..=....+++....+.+|.-|= |+|. +-+.-+=+||+|++++=.+|=-.+ ..+. ...
T Consensus 54 ------E~~FR~~E~~vl~~l~~~~~~ViaTGG--G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~-~~RPll~~~ 124 (172)
T COG0703 54 ------EEGFRRLETEVLKELLEEDNAVIATGG--GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRD-RKRPLLQTE 124 (172)
T ss_pred ------HHHHHHHHHHHHHHHHHCCCEEEECCC--CCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHCCC-CCCCCCCCC
T ss_conf ------899999999999998626995997798--61168999999984885899969999999982346-679865677
Q ss_pred CHHHHHHHHH-HHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 5699999999-98561023675785379973999778989899999999999987
Q gi|254780457|r 160 DYVKILEDLR-NRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 160 ~~~ev~~~i~-~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
+-.+.+.++. +|. |+..-.+.++++++..+ +++++.|...+..-
T Consensus 125 ~~~~~l~~L~~~R~---------~~Y~e~a~~~~~~~~~~-~~v~~~i~~~l~~~ 169 (172)
T COG0703 125 DPREELEELLEERQ---------PLYREVADFIIDTDDRS-EEVVEEILEALEGS 169 (172)
T ss_pred CHHHHHHHHHHHHH---------HHHHHHCCEEECCCCCC-HHHHHHHHHHHHHH
T ss_conf 76899999999989---------99997274884489984-89999999999873
No 76
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.74 E-value=4.5e-07 Score=63.15 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=26.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 89866687789678999999981783562
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
+|+|.|+-||||||+++.||+++++.++-
T Consensus 1 lI~iEG~iGsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEEE
T ss_conf 98998888888999999999966994896
No 77
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.72 E-value=5.8e-08 Score=68.49 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 898666877896789999999817
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
||+|-|++||||||+|+.|.+.|+
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 989788998779999999999860
No 78
>PRK13973 thymidylate kinase; Provisional
Probab=98.71 E-value=1.1e-06 Score=60.77 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=44.6
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHH------CCCCH-HHH---HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 0388689984488889999866776521------11356-999---9999998561023675785379973999778989
Q gi|254780457|r 129 PDARIKFYVTASLDIRARRRYNEMVSRG------EKVDY-VKI---LEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMD 198 (217)
Q Consensus 129 PdA~~KifL~As~e~RA~RR~~el~~~g------~~~~~-~ev---~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~ls 198 (217)
|-.|+=|||+.++++..+|........+ ++..| +.| +.++.++ + ++.-++||.+ .+
T Consensus 127 ~~PDlti~LDv~~e~a~~R~~~R~~~~~~dr~E~~~~~f~~kVr~~Y~~la~~---~----------~~r~~vIDa~-~s 192 (216)
T PRK13973 127 VMPDLTLILDIPAEVGLERAAKRRGSETPDRFEKEDLAFHEKRREAFLQIAAQ---E----------PERCVVIDAD-AS 192 (216)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---C----------CCCEEEEECC-CC
T ss_conf 99998999818889999999983577630025564799999999999999985---9----------8878997199-99
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 8999999999999874069
Q gi|254780457|r 199 IGTMCKVAKGLIDTKLDNS 217 (217)
Q Consensus 199 i~ev~~~i~~~I~~kl~n~ 217 (217)
+++|.+.|++.|+++|..+
T Consensus 193 ~eeV~~~I~~~v~~~L~e~ 211 (216)
T PRK13973 193 PEAVAAEIWAAVDQRLLEA 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999986210
No 79
>PRK13974 thymidylate kinase; Provisional
Probab=98.69 E-value=6.5e-07 Score=62.20 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=46.6
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 0388689984488889999866776521113569--99999999856102367578537997399977898989999999
Q gi|254780457|r 129 PDARIKFYVTASLDIRARRRYNEMVSRGEKVDYV--KILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVA 206 (217)
Q Consensus 129 PdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~--ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i 206 (217)
|.-|+=|||+.++++..+||-..... ....+ +-+..+ |+. -++.+ ..++-++||.+ .++++|.+.|
T Consensus 133 ~~PDlt~~LDv~~e~a~~R~~~~~~d---r~e~e~~~f~~kV--r~~---y~~la---~~~~~~~IDa~-~~ieeV~~~I 200 (212)
T PRK13974 133 LSPDLTFFLEISVEESIRRRKNRKPD---RIEAEGIEFLERV--AEG---FALIA---EERNWKVISAD-QSIETISNEI 200 (212)
T ss_pred CCCCEEEEECCCHHHHHHHHHCCCCC---CHHCCCHHHHHHH--HHH---HHHHH---CCCCEEEEECC-CCHHHHHHHH
T ss_conf 99998999769758899988477634---3101619999999--999---99984---73987999899-9999999999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999874069
Q gi|254780457|r 207 KGLIDTKLDNS 217 (217)
Q Consensus 207 ~~~I~~kl~n~ 217 (217)
.+.|.++++|.
T Consensus 201 ~~~i~~~~~~~ 211 (212)
T PRK13974 201 KETLLNNFSNK 211 (212)
T ss_pred HHHHHHHHHCC
T ss_conf 99999997347
No 80
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=98.68 E-value=1.3e-06 Score=60.32 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=91.3
Q ss_pred ECCCCCCHHHHHHHHHHHHC-----CCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 66877896789999999817-----8356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 14 DGTAAAGKGVLSRFIALEYG-----FHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 14 DGpagsGKsT~ak~lA~~l~-----~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
=|+|||||||+|..|+++|| +.|+| |=++.......+-...+.|++.|=.-
T Consensus 4 mGvaG~GKs~~a~~l~~~lg~iyPd~~yie---------------GDdLHP~~Ni~KMs~GiPL~DdDR~p--------- 59 (175)
T TIGR01313 4 MGVAGSGKSTIASALAHRLGDIYPDAKYIE---------------GDDLHPAANIEKMSRGIPLNDDDRWP--------- 59 (175)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCCCC---------------CCCCCCHHHHHHHCCCCCCCCCCCHH---------
T ss_conf 602786288999999998543157887568---------------86667877798731788887012043---------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE-------CCCHHH--HHHCCCCEE-EEEECCHHHHHHHHHHHHHHHH-C
Q ss_conf 1112205789999887888876303884620-------641255--663038868-9984488889999866776521-1
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILD-------GRDIGT--IIFPDARIK-FYVTASLDIRARRRYNEMVSRG-E 157 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E-------GRDigT--vVfPdA~~K-ifL~As~e~RA~RR~~el~~~g-~ 157 (217)
=...++.++.+.+++ .+.++.|+= =||+=- .--+.+.+. |||.++.++=.+| .+.. .
T Consensus 60 -----WL~~l~~~~~~~~~~--~~~~~~~~~CSALKr~YRD~LR~s~~~~~~~~~FiyL~~~~~~~~~R-----~~~RkG 127 (175)
T TIGR01313 60 -----WLKNLADALAQAAAK--NKVHLVIITCSALKRKYRDILRSSLEEAEPELHFIYLSGSKEVILKR-----MKSRKG 127 (175)
T ss_pred -----HHHHHHHHHHHHHHC--CCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH-----HHHCCC
T ss_conf -----799999999999845--77454478840111355566542202689843788636898999999-----610789
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 135699999999985610236757853799-739997789898999999999999
Q gi|254780457|r 158 KVDYVKILEDLRNRDNQDRNRSYCPLVRDK-DAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 158 ~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~-DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
.-.-...+++--+ + -..|..--+ |.+.||.+.- ++.+++..+..+.
T Consensus 128 HFMka~m~~SQf~----~---LE~P~~nDE~d~~~vd~~~~-~e~~~~~~~~~v~ 174 (175)
T TIGR01313 128 HFMKADMLESQFE----A---LEEPTANDETDVVTVDIDQP-LEAVEEDCLAVVL 174 (175)
T ss_pred CCCCCHHHHHHHH----H---HCCCCCCCCCCEEEECCCCC-HHHHHHHHHHHHH
T ss_conf 9862047899999----7---27888888854378606886-5789999999982
No 81
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=98.67 E-value=8.9e-08 Score=67.37 Aligned_cols=159 Identities=12% Similarity=0.239 Sum_probs=93.5
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf 65558818986668778967899999998178356202899999852321011101465533332101112444-44432
Q gi|254780457|r 3 RLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLD-KAQLS 81 (217)
Q Consensus 3 ~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~lr 81 (217)
.++.+..||=+-|||||||||+|-+|.++|--.=+. ...|+ =...-..+.+++-|...| ..+||
T Consensus 14 ~~~h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~---------~~~LD------GDnvR~gL~~dLGFS~~DR~eNIR 78 (187)
T TIGR00455 14 LNKHRGVVLWLTGLSGSGKSTIANALEKKLEKKGYR---------VYVLD------GDNVRHGLNKDLGFSEEDRKENIR 78 (187)
T ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCE---------EEEEC------CCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 627973898511688563579999999999966974---------99975------863424778888888567056883
Q ss_pred -CHH---------HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCC---EEEEEECCHHHHHHHH
Q ss_conf -012---------100111122057899998878888763038846206412556630388---6899844888899998
Q gi|254780457|r 82 -SNA---------IANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDAR---IKFYVTASLDIRARRR 148 (217)
Q Consensus 82 -~~~---------I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~---~KifL~As~e~RA~RR 148 (217)
--| +=-++|.||-+.+.|..+- .-++++- +=+|+.|.++|+-+|=
T Consensus 79 RigEVa~L~~~~G~i~ltsfISPyR~~R~~vR----------------------~~~~~~Gl~F~Evfv~~PL~vcE~RD 136 (187)
T TIGR00455 79 RIGEVAKLLVRNGVIVLTSFISPYRADRQMVR----------------------ELIEEGGLEFIEVFVKCPLEVCEQRD 136 (187)
T ss_pred EEHHHHHHHHHCCEEEEEEEECCCHHHHHHHH----------------------HHHHCCCEEEEEEECCCCHHHHCCCC
T ss_conf 53264677764793899842177666789998----------------------87540573689972178868632689
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHH
Q ss_conf 66776521113569999999998561023675785379973-999778989899999999999
Q gi|254780457|r 149 YNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDTSEMDIGTMCKVAKGLI 210 (217)
Q Consensus 149 ~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDTs~lsi~ev~~~i~~~I 210 (217)
-+=|-++-.+- +|+. .|==-||--.|+.+ +++||+..++++.+++|++++
T Consensus 137 PKGLYkKAR~G-------EIk~-----FTGID~pYE~P~~Pe~~~~tD~~~~~~~~~~i~~~L 187 (187)
T TIGR00455 137 PKGLYKKARNG-------EIKG-----FTGIDSPYEAPENPEVVLDTDQEDVEECVQQIIELL 187 (187)
T ss_pred CCCHHHHHHCC-------CCCC-----CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 85023886468-------8865-----678788778699870688377233888999999719
No 82
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1.3e-06 Score=60.50 Aligned_cols=149 Identities=20% Similarity=0.238 Sum_probs=82.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC--------CCCHHHH
Q ss_conf 68778967899999998178356202899999852321011101465533332101112444444--------3201210
Q gi|254780457|r 15 GTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQ--------LSSNAIA 86 (217)
Q Consensus 15 GpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------lr~~~I~ 86 (217)
|.|||||||++..||++||+.|+| +=++.......+....+.+++.|-.- +++..-.
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fid---------------GDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~ 66 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFID---------------GDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQK 66 (161)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEC---------------CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 877657779999999980982333---------------56569988999872799898411247999999999986427
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEE-EEEECCHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 011112205789999887888876303884620641255663038868-9984488889999866776521113569999
Q gi|254780457|r 87 NVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIK-FYVTASLDIRARRRYNEMVSRGEKVDYVKIL 165 (217)
Q Consensus 87 ~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~K-ifL~As~e~RA~RR~~el~~~g~~~~~~ev~ 165 (217)
+..+.++. ..|...- ||+=..-.|+ ++ +||+.+.+.-.+| ..+ +.....-...+
T Consensus 67 ~~~~vi~C-----SALKr~Y--------------RD~LR~~~~~--~~Fv~L~g~~~~i~~R-m~~---R~gHFM~~~ll 121 (161)
T COG3265 67 NKHVVIAC-----SALKRSY--------------RDLLREANPG--LRFVYLDGDFDLILER-MKA---RKGHFMPASLL 121 (161)
T ss_pred CCCEEEEC-----HHHHHHH--------------HHHHHCCCCC--EEEEEECCCHHHHHHH-HHH---CCCCCCCHHHH
T ss_conf 98169962-----7887889--------------9998545997--3899963889999999-876---05677888999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999856102367578537997399977898989999999999998
Q gi|254780457|r 166 EDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 166 ~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
.+--. ..-|...-+|.+.||-+. ++++++..++..+..
T Consensus 122 ~SQfa--------~LE~P~~de~vi~idi~~-~~e~vv~~~~~~l~~ 159 (161)
T COG3265 122 DSQFA--------TLEEPGADEDVLTIDIDQ-PPEEVVAQALAWLKE 159 (161)
T ss_pred HHHHH--------HHCCCCCCCCEEEEECCC-CHHHHHHHHHHHHHC
T ss_conf 98999--------835899998879864899-989999999999861
No 83
>PRK05416 hypothetical protein; Provisional
Probab=98.64 E-value=6.9e-07 Score=62.05 Aligned_cols=145 Identities=19% Similarity=0.348 Sum_probs=76.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCC-CCCCCCHHHHC
Q ss_conf 8986668778967899999998178356202899999852321011101465533332101-112444-44432012100
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNI-VLSNLD-KAQLSSNAIAN 87 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~-~~~lr~~~I~~ 87 (217)
+|-|-|.|||||||..+.| +.+||..+| |+++.=.....+....- ....+- .-++|+..-
T Consensus 8 lviVTGlSGAGKStAl~~L-EDlGy~ciD---------------NlP~~Ll~~l~~~~~~~~~~~~lAv~iD~R~~~~-- 69 (292)
T PRK05416 8 LVIVTGLSGAGKSVALRAL-EDLGYYCVD---------------NLPPSLLPKLVELLAQSGGIDKVAVVIDVRSRPF-- 69 (292)
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCEEEC---------------CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC--
T ss_conf 9999689978799999999-817944786---------------8888999999999724788770699982466544--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEE-EEEECCHHHHHHHHHHHHHHHH----CCCCHH
Q ss_conf 11112205789999887888876303884620641255663038868-9984488889999866776521----113569
Q gi|254780457|r 88 VASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIK-FYVTASLDIRARRRYNEMVSRG----EKVDYV 162 (217)
Q Consensus 88 ~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~K-ifL~As~e~RA~RR~~el~~~g----~~~~~~ 162 (217)
... +.....++ ++. + .+++ +||+|+.++ --|||.|-...- ...++.
T Consensus 70 ----~~~-------l~~~~~~l-~~~-~---------------~~~~ilFLdA~~~~-LlrRy~eTRR~HPL~~~~~~L~ 120 (292)
T PRK05416 70 ----FLD-------LPEALDEL-RER-G---------------IDVRVLFLDASDEV-LIRRYSETRRRHPLSGDGGSLL 120 (292)
T ss_pred ----HHH-------HHHHHHHH-HHC-C---------------CCEEEEEEECCHHH-HHHHHHHCCCCCCCCCCCCCHH
T ss_conf ----778-------99999999-857-9---------------95599999788699-9998875068999888999989
Q ss_pred HHHHHHH-HHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999999-985610236757853799739997789898999999999999
Q gi|254780457|r 163 KILEDLR-NRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 163 ev~~~i~-~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
+.|. +|+ -.+|++...| ++||||+|++.|-=+.+...+.
T Consensus 121 ---eaI~~Er~------~L~~ir~~Ad-~vIDTS~l~~~~Lr~~i~~~~~ 160 (292)
T PRK05416 121 ---EAIELERE------LLAPLRERAD-LVIDTSELSVHQLRERIRERFG 160 (292)
T ss_pred ---HHHHHHHH------HHHHHHHHCC-EEEECCCCCHHHHHHHHHHHHC
T ss_conf ---99999999------9999997402-8974799999999999999865
No 84
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=6.7e-06 Score=56.14 Aligned_cols=191 Identities=15% Similarity=0.195 Sum_probs=104.3
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 555881898666877896789999999817835620289999985232101--110146553333210111244444432
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAG--ISLDDEKMAIKIAQNIVLSNLDKAQLS 81 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~lr 81 (217)
.+.++.||-|-|+||.||||+|-.||.+||...+=++-.-|-+--.++... +.+....+ ..-+.+.....+++
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy--~Awkalr~~~~~~p--- 159 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSY--DAWKALRDPTDENP--- 159 (299)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCHHHCCHHHHHHH--HHHHHHCCCCCCCC---
T ss_conf 1578759996178877725799999997298610042479999997379774553567577--99998368999961---
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHH-HHHHHHHHCCCEEEECC-----CHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 01210011112205789999887-88887630388462064-----1255663038868998448888999986677652
Q gi|254780457|r 82 SNAIANVASQVASIDSVRDALID-IQRSFAQNKLGVILDGR-----DIGTIIFPDARIKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 82 ~~~I~~~~S~iA~~p~VR~~l~~-~Qr~~~~~~~g~V~EGR-----DigTvVfPdA~~KifL~As~e~RA~RR~~el~~~ 155 (217)
-|.-+.++.+ .|---+.. +.|.+ .+..++|+||= =|-...|-++.+-|||.+.-+.--+.||-.....
T Consensus 160 --iiaGF~dqa~---~V~~GI~~VI~RAi-~eG~~lIIEGvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~ 233 (299)
T COG2074 160 --IIAGFEDQAS---AVMVGIEAVIERAI-EEGEDLIIEGVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRY 233 (299)
T ss_pred --HHHHHHHHHH---HHHHHHHHHHHHHH-HCCCCEEEEEEEECCCCCCHHHHCCCEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf --3131787767---99988999999998-53753588742115002167661355178999838878999999998888
Q ss_pred H----CCCCHHHHHHHH--HHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1----113569999999--9985610236757853799739997789898999999999999874
Q gi|254780457|r 156 G----EKVDYVKILEDL--RNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 156 g----~~~~~~ev~~~i--~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
- ..--|-+-+.++ +.+-..+.-|++. .=+|+|.+ ++++++.+++.|-++.
T Consensus 234 t~~~rp~~Ryl~yf~EiR~I~Dyl~~~Are~g-------VPvI~n~d--i~etv~~il~~i~~~~ 289 (299)
T COG2074 234 THASRPGGRYLEYFKEIRTIHDYLVERAREHG-------VPVIENDD--IDETVDRILEDIRKRT 289 (299)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCEECCCC--HHHHHHHHHHHHHHHH
T ss_conf 76059656799999999999999999888659-------98112531--9999999999999998
No 85
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.62 E-value=1.2e-06 Score=60.68 Aligned_cols=145 Identities=14% Similarity=0.183 Sum_probs=74.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|.|.+=|+.||||||+++.||++||++|+||-..--.- .+.++.+... ..
T Consensus 1 m~I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D~~Ie~~------~G~sI~eIF~---~~--------------------- 50 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRISEVLDLQFIDMDEEIERR------EGRSVRRIFE---ED--------------------- 50 (488)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHH------HCCCHHHHHH---HH---------------------
T ss_conf 94999899999877999999998397956477999998------5998889998---87---------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC-------CCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCC--C
Q ss_conf 1112205789999887888876303-------884620641255663038868998448888999986677652111--3
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNK-------LGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEK--V 159 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~-------~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~--~ 159 (217)
-.+..|+.=-+..+++...+ +|+|+.- -....+-... =+||+|++++=.+|--.+ +.. .
T Consensus 51 -----GE~~FR~~E~~~l~~l~~~~~~ViatGGGavl~~--~nr~~L~~~~-vV~L~a~~e~l~~R~~~~----~RPLL~ 118 (488)
T PRK13951 51 -----GEEYFRLKEKELLRELVERDNVVVATGGGVVIDP--ENRELLKKEK-TLFLYAPPEVLMERVTTE----NRPLLR 118 (488)
T ss_pred -----CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH--HHHHHHHCCC-EEEEECCHHHHHHHHCCC----CCCCCC
T ss_conf -----8899999999999998608996997698232899--9999996498-899989999999983789----998889
Q ss_pred CHHHHHHHH-HHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 569999999-99856102367578537997399977898989999999
Q gi|254780457|r 160 DYVKILEDL-RNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVA 206 (217)
Q Consensus 160 ~~~ev~~~i-~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i 206 (217)
+-++-+.+| .+|+ |+..--+ .||++..+..+....+
T Consensus 119 ~~~~rl~~L~~~R~---------p~Y~e~~--~i~~~~~~~~~~~a~~ 155 (488)
T PRK13951 119 EGKERIREIWERRK---------QFYTEFR--GIDTSKLNEWETTALV 155 (488)
T ss_pred CCHHHHHHHHHHHH---------HHHHHHC--CEECCCCCCHHHHHHH
T ss_conf 94899999999876---------8899854--1004689726669999
No 86
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.62 E-value=5e-06 Score=56.93 Aligned_cols=180 Identities=18% Similarity=0.201 Sum_probs=97.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 88189866687789678999999981783562028999998523210111014655-33332101112444444320121
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKM-AIKIAQNIVLSNLDKAQLSSNAI 85 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~lr~~~I 85 (217)
.+.+|-|-|.+|+||||+|-.||.+||+..+=+.-.-|.+--.++...+.+..... ..+.... ..++ +-
T Consensus 2 ~~~iiligG~sGvGKStla~~lA~rlgi~~visTD~IRevlR~~i~~eP~L~~Ssy~A~~~~~~----~~~~-----~i- 71 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGS----MTDE-----NI- 71 (197)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC----CCHH-----HH-
T ss_conf 7479998579988789999999997499755343479999998668874003304679887089----6527-----89-
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCC-------C-CEEEEEECCHHHHHHHHHHHHHHHH-
Q ss_conf 001111220578999988788887630388462064125566303-------8-8689984488889999866776521-
Q gi|254780457|r 86 ANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPD-------A-RIKFYVTASLDIRARRRYNEMVSRG- 156 (217)
Q Consensus 86 ~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPd-------A-~~KifL~As~e~RA~RR~~el~~~g- 156 (217)
......+-..|-..+........+...++|+||= .+.|. + -.-|+|.-+-+..-+.||.+.....
T Consensus 72 --i~Gf~~q~~~V~~gi~avi~Ra~~eg~slIIEGV----HlvP~~i~~~~~~~~~~~~l~i~dee~H~~Rf~~R~~~~~ 145 (197)
T PRK12339 72 --VKGYLDQARAIMPGINRVIRRALLNGEDLVIESL----YFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTH 145 (197)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----EECHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf --9999999999999999999999973997799852----1177887788765958999997888999999999854312
Q ss_pred CCCCHHHHHHHHHH-HHHHC----CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 11356999999999-85610----236757853799739997789898999999999999
Q gi|254780457|r 157 EKVDYVKILEDLRN-RDNQD----RNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 157 ~~~~~~ev~~~i~~-RD~~D----~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
.....+.-++.+.. |-.+| .-+++ +--+||+++ +++.++.+.++|.
T Consensus 146 ~~~p~~ry~~~f~~IR~Iq~ylv~~A~~~-------~ipvI~n~~--~d~s~~~i~~~i~ 196 (197)
T PRK12339 146 KNSPGKRLAEHLPEYRTIMDYSIADARGY-------NIKVIDTDN--YREARNPLLDPIS 196 (197)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCEECCCC--HHHHHHHHHHHHH
T ss_conf 67716699998999999999999988873-------998553772--8999999999840
No 87
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.57 E-value=8.2e-07 Score=61.61 Aligned_cols=32 Identities=31% Similarity=0.598 Sum_probs=28.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 58818986668778967899999998178356
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~l 37 (217)
...|+|+|-||-|+||||+|++||++|++..+
T Consensus 2 ~~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 2 NVAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 86608998446446878999999988388502
No 88
>PRK08118 topology modulation protein; Reviewed
Probab=98.56 E-value=5.3e-07 Score=62.76 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=59.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
Q ss_conf 89866687789678999999981783562028999998523210111014655333321011124444443201210011
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVA 89 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~ 89 (217)
.|.|=|++||||||+|+.||+++|+++++--.+|= ..+....
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~w-------~~~w~~~------------------------------- 44 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW-------KPNWEGV------------------------------- 44 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEE-------CCCCCCC-------------------------------
T ss_conf 79998899987999999999988969796443476-------6899468-------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH--HHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 11220578999988788887630388462064125--56630388689984488889999
Q gi|254780457|r 90 SQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIG--TIIFPDARIKFYVTASLDIRARR 147 (217)
Q Consensus 90 S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDig--TvVfPdA~~KifL~As~e~RA~R 147 (217)
. ++.....++++.. .+..|+||==-. ...+|.||.=|||+-+...+..|
T Consensus 45 ----~----~~e~~~~~~~~~~-~~~WIidGny~~~~~~r~~~aD~iI~Ld~p~~~~~~r 95 (167)
T PRK08118 45 ----P----KEEQRTVQNELVK-EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYR 95 (167)
T ss_pred ----C----HHHHHHHHHHHHH-CCCEEEECCCHHHHHHHHHHCCEEEEECCCHHHHHHH
T ss_conf ----8----8999999999983-8987994771779987797699999985989999999
No 89
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=98.53 E-value=6e-07 Score=62.40 Aligned_cols=193 Identities=19% Similarity=0.243 Sum_probs=103.6
Q ss_pred CCCC--CCCCEEEEEECCCCCCH----HHHHHHHHHHHCCCE-----EECCHHHHHH--HHHHH--HCCCCHHH-----H
Q ss_conf 9765--55881898666877896----789999999817835-----6202899999--85232--10111014-----6
Q gi|254780457|r 1 MGRL--ESQSIIIAIDGTAAAGK----GVLSRFIALEYGFHY-----LDTGLIYRAV--AKNIL--DAGISLDD-----E 60 (217)
Q Consensus 1 m~~~--~~k~~iIaIDGpagsGK----sT~ak~lA~~l~~~~-----ldtG~~YR~~--a~~~~--~~~~~~~~-----~ 60 (217)
|.++ +...+||+|-|-||||| ||+++.|.+.++-.. +.-=.+|.-. ..... +.+.++++ .
T Consensus 1 M~~iP~~~~c~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~ 80 (220)
T TIGR00235 1 MDKIPPKGTCIIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDN 80 (220)
T ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCH
T ss_conf 98888988617997017661015678999999999983140014577503244588988731246431258898003037
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH-HHHHHH-HCCC-EEEECCCH--HHHHHCCCCEEE
Q ss_conf 553333210111244444432012100111122057899998878-888763-0388-46206412--556630388689
Q gi|254780457|r 61 KMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDI-QRSFAQ-NKLG-VILDGRDI--GTIIFPDARIKF 135 (217)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~-Qr~~~~-~~~g-~V~EGRDi--gTvVfPdA~~Ki 135 (217)
.++.++.+++.-...-+.=+++ .+- ... +.+-+. .|.. +|+||==+ -..+---+|+||
T Consensus 81 ~Ll~~Hl~nLk~g~~~~~P~Yd--------yv~---------HtRv~~eT~~~~P~~VvIlEGi~~l~D~Rl~~L~dlki 143 (220)
T TIGR00235 81 DLLYEHLKNLKNGSAIDVPVYD--------YVN---------HTRVKKETVHVEPKDVVILEGILLLTDERLRDLMDLKI 143 (220)
T ss_pred HHHHHHHHHHHCCCEECCCCCC--------CCC---------EECCCCCCEEECCEEEEEEECCHHHHHHHHHHHHCCEE
T ss_conf 9999999998468802245425--------410---------02025562687350689970618888799988718236
Q ss_pred EEECCHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9844888899998667765-211135699999999985610236757853799739997789898999999999999874
Q gi|254780457|r 136 YVTASLDIRARRRYNEMVS-RGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 136 fL~As~e~RA~RR~~el~~-~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
|++|+.++|--||-.-... +|. +.+.|.++=.+==.=-..+=+-|.++-.|. +|=.+..+ +-.++.+...|+..+
T Consensus 144 fvDt~~D~rliRRl~RD~~~RGR--~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~-IiP~g~~n-~~A~~~l~~~I~~l~ 219 (220)
T TIGR00235 144 FVDTPLDIRLIRRLERDIEERGR--SLDSVIDQYRKTVRPMYLQFVEPTKQYADL-IIPEGGKN-EVAINVLKTKIKSLL 219 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHCCCCCCCCCCCCCCCCCE-EECCCCCC-HHHHHHHHHHHHHHC
T ss_conf 77468303256565655754289--788999999985346210145501014667-62589881-688999999999860
No 90
>PRK07261 topology modulation protein; Provisional
Probab=98.52 E-value=7.3e-07 Score=61.90 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=62.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
|.|.|=|++||||||+|+.||+++|++++.--.+|= ..+...-
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w-------~p~w~~~------------------------------ 43 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHF-------SSNWQER------------------------------ 43 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEE-------CCCCEEC------------------------------
T ss_conf 989998899986899999999987979797022788-------8999888------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH---HHHHCCCCEEEEEECCHHHH---HHHHHHH
Q ss_conf 111220578999988788887630388462064125---56630388689984488889---9998667
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIG---TIIFPDARIKFYVTASLDIR---ARRRYNE 151 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDig---TvVfPdA~~KifL~As~e~R---A~RR~~e 151 (217)
... .....+.++..+ +..|+||==-. ..-+|.||.=|||+-+..+. +-+|+..
T Consensus 44 -----~~~----e~~~~~~~~~~~-~~WIiDGny~~~~~~~rl~~aD~iI~Ld~p~~~~l~rvikR~l~ 102 (171)
T PRK07261 44 -----DDD----DMIADISNFLLK-QDWIIEGNYSNCLYEERMAEADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred -----CHH----HHHHHHHHHHHC-CCEEEECCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf -----899----999999999848-98799478512477767977999999858499999999999999
No 91
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=98.51 E-value=1.5e-06 Score=59.98 Aligned_cols=149 Identities=17% Similarity=0.269 Sum_probs=75.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCC-CCCCCCHHHH
Q ss_conf 89866687789678999999981783562028999998523210111014655333321011--12444-4443201210
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIV--LSNLD-KAQLSSNAIA 86 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~-~~~lr~~~I~ 86 (217)
+|-|-|.|||||||..+.| +.+||..+| |+++.=.....+....-. ...+- .-++|+.+
T Consensus 3 lviVTGlSGAGKStAl~~L-ED~Gy~cvD---------------NlP~~Ll~~~~~~~~~~~~~~~~lAi~iD~R~~~-- 64 (284)
T pfam03668 3 LVIITGRSGAGKSVALRAL-EDLGYYCVD---------------NLPPQLLPRLVDFLLAAGSRISSVAVVMDVRNRP-- 64 (284)
T ss_pred EEEEECCCCCCHHHHHHHH-HCCCCEEEC---------------CCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--
T ss_conf 9999579977799999999-818924775---------------8899999999999862478765268999636653--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC-HHHHH
Q ss_conf 01111220578999988788887630388462064125566303886899844888899998667765211135-69999
Q gi|254780457|r 87 NVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVD-YVKIL 165 (217)
Q Consensus 87 ~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~-~~ev~ 165 (217)
..+..++. + .++.+. ++ +.. =+||+|+.++ --|||.|-...- ... -..++
T Consensus 65 ----~~~~~~~~---~----~~l~~~--~~-------------~~~-ilFLdA~~~~-LirRy~eTRR~H-PL~~~~~~l 115 (284)
T pfam03668 65 ----FSGDLDEQ---R----NELATR--AI-------------TPR-ILFLEADDDT-LVRRYSDTRRSH-PLSGKQLSL 115 (284)
T ss_pred ----CHHHHHHH---H----HHHHHC--CC-------------CCE-EEEEECCCHH-HHHHHHHCCCCC-CCCCCCCCH
T ss_conf ----33769999---9----999866--99-------------826-9999788089-999888736889-988889869
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999985610236757853799739997789898999999999999
Q gi|254780457|r 166 EDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 166 ~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
+.|. +++. ..+|++...| ++||||++++.|-=+.+...+.
T Consensus 116 eaI~-~Er~----~L~~lr~~Ad-~vIDTS~l~~~~Lr~~i~~~~~ 155 (284)
T pfam03668 116 EGIA-AERR----LLEPLRARAD-LIIDTSTLSVHGLRESIRRAFG 155 (284)
T ss_pred HHHH-HHHH----HHHHHHHHCC-EEEECCCCCHHHHHHHHHHHHC
T ss_conf 9999-9999----9999996265-9985689999999999999864
No 92
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.43 E-value=2.2e-06 Score=59.03 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=76.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 89866687789678999999981-----7835620289999985232101110146553333210111244444432012
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEY-----GFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNA 84 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l-----~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~ 84 (217)
||=+-|.|||||||+|+.|.++| +..+|| |--.|.. +..+.+.+..+..........+ -..|....
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lD-GD~iR~~--l~~~lgys~~~R~~n~~r~~~l------ak~l~~qg 71 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD-GDNVRHG--LNKDLGFSREDREENIRRIAEV------AKLLADAG 71 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHHH--HCCCCCCCHHHHHHHHHHHHHH------HHHHHHCC
T ss_conf 9898799999999999999999998699759977-4889977--3655598878899999999999------99998379
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 100111122057899998878888763038846206412556630388-6899844888899998667765211135699
Q gi|254780457|r 85 IANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDAR-IKFYVTASLDIRARRRYNEMVSRGEKVDYVK 163 (217)
Q Consensus 85 I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~-~KifL~As~e~RA~RR~~el~~~g~~~~~~e 163 (217)
+.-.+|.+|..+++|++..+. |++.. +-||+.|++++..+|-.+.+-++-..-
T Consensus 72 ~~VIvs~isp~~~~R~~~r~~----------------------i~~~~y~eIyl~~~le~~~~RD~KglY~ka~~g---- 125 (149)
T cd02027 72 LIVIAAFISPYREDREAARKI----------------------IGGGDFLEVFVDTPLEVCEQRDPKGLYKKARAG---- 125 (149)
T ss_pred CEEEEECCCCCHHHHHHHHHH----------------------CCCCCEEEEEECCCHHHHHHCCCHHHHHHHHCC----
T ss_conf 827884167889999999987----------------------477766999971878999873804378898738----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCE-EEEEC
Q ss_conf 99999998561023675785379973-99977
Q gi|254780457|r 164 ILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDT 194 (217)
Q Consensus 164 v~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDT 194 (217)
...+..=-..|--+|.++ ++|||
T Consensus 126 --------~i~nv~Gvd~~ye~P~~pdl~idT 149 (149)
T cd02027 126 --------EIKGFTGIDDPYEAPENPDLVLDT 149 (149)
T ss_pred --------CCCCCCCCCCCCCCCCCCCEEECC
T ss_conf --------989840037799999998248149
No 93
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.42 E-value=2.2e-05 Score=53.11 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=27.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 5881898666877896789999999817835
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
++.|.|+|.|+=||||||+++.|+++|.-..
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g 31 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERG 31 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9962999978888988999999999999829
No 94
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.41 E-value=4.4e-06 Score=57.22 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=87.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 89866687789678999999981783-56202899999852321011---101465533332101112444444320121
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFH-YLDTGLIYRAVAKNILDAGI---SLDDEKMAIKIAQNIVLSNLDKAQLSSNAI 85 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~-~ldtG~~YR~~a~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I 85 (217)
.|.|.||||+||||+.+.|-+..... ++++- +.|--.-..+. .++.+.+......+-++.. .+-+..--
T Consensus 4 LivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s----~tTRp~e~~g~dy~fvs~eeF~~~i~~g~F~~~---w~~~g~~Y 76 (184)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVAHR----YITRPASAGSENHIALSEQEFFTRAGQNLFALS---WHANGLYY 76 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCEEEEEE----ECCCCCCCCCCCCEECCHHHHHHHHHCCCEEEE---EEECCCCC
T ss_conf 99998998699999999998448998899987----237899999968288799999999977982999---98669566
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC-CCH---HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 00111122057899998878888763038846206-412---55663038868998448888999986677652111356
Q gi|254780457|r 86 ANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG-RDI---GTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDY 161 (217)
Q Consensus 86 ~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG-RDi---gTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~ 161 (217)
+ +. .+|.. .+. ....+|++| |-. --..||++-+=|++++|+++-.+| |..+|. .+-
T Consensus 77 G-----~~--~~v~~-------~l~-~G~dVi~~g~~~~~~~~~~~~~~~~~~~~i~ps~~~L~~R----L~~RGt-Es~ 136 (184)
T PRK10078 77 G-----VG--IEIDL-------WLH-AGFDVVVNGSRAHLPQARARYQSALLPVCLQVSPEILRQR----LENRGR-ENA 136 (184)
T ss_pred C-----CC--HHHHH-------HHH-CCCEEEEECHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH----HHHCCC-CCH
T ss_conf 7-----07--89999-------997-4994999517989999998679858999957999999999----997299-999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999985610236757853799739997789898999999999999874
Q gi|254780457|r 162 VKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 162 ~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
++|..-|. +-. -.++.|.++|+++ -++++.++.+..+|.+.=
T Consensus 137 e~I~~RL~----~A~------~~~~~d~~vInnD-g~le~av~~l~~ii~~~~ 178 (184)
T PRK10078 137 SEINARLA----RAA------RYQPQDCHTLNND-GSLRQSVDTLLTLLHQKE 178 (184)
T ss_pred HHHHHHHH----HHC------CCCCCCEEEEECC-CCHHHHHHHHHHHHHHHH
T ss_conf 99999999----612------1578899999899-889999999999999987
No 95
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.39 E-value=4.7e-05 Score=51.11 Aligned_cols=194 Identities=14% Similarity=0.192 Sum_probs=93.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5588189866687789678999999981783562028999998523210111--01465533332101112444444320
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGIS--LDDEKMAIKIAQNIVLSNLDKAQLSS 82 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~lr~ 82 (217)
..++++|-|-|.||+||||+|-.||.+||...+-+--.-|.+--.++..... +....+ ..-+-+.-.+...+ -..
T Consensus 259 ~~~PiiILIGGaSGvGKSTlAseLA~RLGI~~VIsTDsIREVMR~~is~el~P~Lh~SSy--~Awk~L~~~~~~~~-~~~ 335 (492)
T PRK12337 259 PPRPLHVLLGGVSGTGKSVLAAELAYRLGITRVVPTDAIREVMRAMVSKDLLPTLHASTF--NAWEALVPPGLGLP-GEP 335 (492)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHCCHHHHHHH--HHHHHCCCCCCCCC-CCC
T ss_conf 688769996078886688899999996098810254479999998459764845777556--88886087345777-786
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCC---------C-CEEEEEECCHHHHHHHHHHHH
Q ss_conf 121001111220578999988788887630388462064125566303---------8-868998448888999986677
Q gi|254780457|r 83 NAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPD---------A-RIKFYVTASLDIRARRRYNEM 152 (217)
Q Consensus 83 ~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPd---------A-~~KifL~As~e~RA~RR~~el 152 (217)
.+---+...-.+-..|=.-+...+........++|+||= ++.|. + -+=|.++.+-|.--++||...
T Consensus 336 ~~~~vi~GF~~Qv~~V~vGl~aVieRa~~EG~SvVIEGV----HLvPg~i~~~~~e~~~vIp~mV~i~dEe~Hr~RF~~R 411 (492)
T PRK12337 336 TRVELLAGFRDQVQQVSVGLKAVVRRSILEGTSLVLEGV----HLVPGYLQHAYQDGALTVPMLVALPDEEEHRRHFELR 411 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----EECHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHH
T ss_conf 076899899999999999999999999972886799833----3070666666415873899999847679999999987
Q ss_pred H----HHHCCCCHHHHHHHH--HHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6----521113569999999--9985610236757853799739997789898999999999999874
Q gi|254780457|r 153 V----SRGEKVDYVKILEDL--RNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 153 ~----~~g~~~~~~ev~~~i--~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
. .......|-+=..+| ++.-....-|++. .=+||+.+ ++|.++++.+.|-.++
T Consensus 412 ~r~t~~~Rp~ekYLk~F~eIR~IQdyLv~rAre~g-------VPVI~n~~--ldesvd~~~evi~~r~ 470 (492)
T PRK12337 412 DRETAASRPLHRYMRHFEEIRLMQDHLLRLAREED-------VPVLDGET--LDESADKAVEVVLRYV 470 (492)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCC--HHHHHHHHHHHHHHHH
T ss_conf 51410368601799979999999999999998749-------98207876--6779999999999999
No 96
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=98.31 E-value=1.6e-05 Score=53.88 Aligned_cols=175 Identities=18% Similarity=0.292 Sum_probs=99.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-C-CCCCCCCC----
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112-4-44444320----
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLS-N-LDKAQLSS---- 82 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~-~-~~~~~lr~---- 82 (217)
++|.+-|.-||||||+++.|+. +|+..+|.-.+-|.+. +.+... -..+...+...+... + +|-..|..
T Consensus 2 ~~IGLTGGIgsGKStv~~~l~~-~G~~viDaD~iar~v~----~pg~~~-~~~iv~~FG~~il~~dG~ldR~~L~~~vF~ 75 (394)
T PRK03333 2 LRIGLTGGIGAGKSTVSATLAQ-LGAVVVDGDVLAREVV----EPGTEG-LAALVEAFGDDILLADGALDRPALAAKAFA 75 (394)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHH----CCCHHH-HHHHHHHHCHHHHCCCCCCCHHHHHHHHHC
T ss_conf 4998306755579999999998-7994998579999994----398689-999999859896388973569999988838
Q ss_pred -H----HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE-------ECCCHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf -1----21001111220578999988788887630388462-------06412556630388689984488889999866
Q gi|254780457|r 83 -N----AIANVASQVASIDSVRDALIDIQRSFAQNKLGVIL-------DGRDIGTIIFPDARIKFYVTASLDIRARRRYN 150 (217)
Q Consensus 83 -~----~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~-------EGRDigTvVfPdA~~KifL~As~e~RA~RR~~ 150 (217)
+ ..+.+ .+|.||+....+..+. . ...+|+ |+. .-+..+.-+-++|+.++|.+|=.
T Consensus 76 d~~~~~~Ln~I-----~HP~Vr~~~~~~~~~~-~-~~~vvv~DiPLL~E~~-----~~~~~d~VvvV~~p~e~qv~RL~- 142 (394)
T PRK03333 76 DDEARAVLNGI-----VHPLVAARRAELIAAA-P-EDAVVVEDIPLLVESG-----MAPLFPLVVVVHADVEVRVRRLV- 142 (394)
T ss_pred CHHHHHHHHHH-----HCHHHHHHHHHHHHHC-C-CCCEEEEEECHHEECC-----CCCCCCEEEEEECCHHHHHHHHH-
T ss_conf 99999999861-----5899999999999855-7-9977999400113226-----30369979999898899999998-
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7765211135699999999985610236757853799739997789898999999999999874
Q gi|254780457|r 151 EMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 151 el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl 214 (217)
.....+-+++..-|..-=-.+..|.. | | ++||||. |+++..+.+-.+=..+|
T Consensus 143 ----~r~gls~~~A~aRIaaQ~~~e~r~a~-----A-D-~VIDNsG-t~~~l~~~v~~lW~~rl 194 (394)
T PRK03333 143 ----EQRGMAEADARARIAAQASDEQRRAA-----A-D-VWLDNSG-TPEELVEAVRDLWADRL 194 (394)
T ss_pred ----HCCCCCHHHHHHHHHHCCCHHHHHHH-----C-C-EEEECCC-CHHHHHHHHHHHHHHHH
T ss_conf ----63798999999999947999999985-----9-9-9996989-99999999999999742
No 97
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.27 E-value=5.6e-07 Score=62.59 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=25.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH---HCCCEEEC
Q ss_conf 8986668778967899999998---17835620
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALE---YGFHYLDT 39 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~---l~~~~ldt 39 (217)
+|+|.||+||||||+|+.|++. .++.++++
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l~~~~~~~~~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 978836888872589999999958954999631
No 98
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.27 E-value=1.3e-05 Score=54.41 Aligned_cols=174 Identities=19% Similarity=0.256 Sum_probs=82.4
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE-EECCHHHHHHHHHHHH---CCCC---HHHHHHHHHHHHHCCCCCC
Q ss_conf 6555881898666877896789999999817835-6202899999852321---0111---0146553333210111244
Q gi|254780457|r 3 RLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHY-LDTGLIYRAVAKNILD---AGIS---LDDEKMAIKIAQNIVLSNL 75 (217)
Q Consensus 3 ~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~-ldtG~~YR~~a~~~~~---~~~~---~~~~~~~~~~~~~i~~~~~ 75 (217)
-|+.+..+|.|-||||+||+|+.+.|.+.+.-.+ +..-. .|-..-. .|.+ .+.+.+......+-++..
T Consensus 2 ~~~~~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~----TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~- 76 (208)
T PRK00300 2 MMMRRGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSA----TTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEW- 76 (208)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEE----ECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEE-
T ss_conf 6241883899999998899999999997299868998974----68898998778965799619999999862836678-
Q ss_pred CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE----CCCHHHHHHCCCCEEEEEEC-CHHHHHHHHHH
Q ss_conf 44443201210011112205789999887888876303884620----64125566303886899844-88889999866
Q gi|254780457|r 76 DKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILD----GRDIGTIIFPDARIKFYVTA-SLDIRARRRYN 150 (217)
Q Consensus 76 ~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E----GRDigTvVfPdA~~KifL~A-s~e~RA~RR~~ 150 (217)
.+.+..--+. ....|+ +...+...+|+| |=-.--..+|+| +-||+.+ |+++=.+|
T Consensus 77 --~~~~g~~YGT------~~~~I~--------~~~~~G~~vildidvqGa~~lk~~~~~~-~~IFI~Pps~e~L~~R--- 136 (208)
T PRK00300 77 --AEVFGNYYGT------PREPVE--------EALAAGKDVLLEIDWQGAQQVKKKMPDA-VSIFILPPSLEELERR--- 136 (208)
T ss_pred --EEECCCCEEC------CHHHHH--------HHHHCCCCEEEECCHHHHHHHHHHCCCC-EEEEEECCCHHHHHHH---
T ss_conf --9983870352------469999--------9985699879746789999999859775-7999828899999999---
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 77652111356999999999856102367578537997399977898989999999999998
Q gi|254780457|r 151 EMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 151 el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
|..+|. .+-+++..-|.. -..+. +. ..--|.++|+ + ++++.++.+..+|..
T Consensus 137 -L~~Rg~-es~~~I~~Rl~~-A~~El--~~---~~~fD~vIiN-d--dl~~a~~~l~~ii~~ 187 (208)
T PRK00300 137 -LRGRGT-DSEEVIARRLEA-AKEEI--AH---ASEYDYVIVN-D--DLETALEELKAIIRA 187 (208)
T ss_pred -HHHCCC-CCHHHHHHHHHH-HHHHH--HH---HHCCCEEEEC-C--CHHHHHHHHHHHHHH
T ss_conf -986389-988899999999-99999--88---8559999989-9--999999999999999
No 99
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.18 E-value=2.8e-05 Score=52.44 Aligned_cols=148 Identities=19% Similarity=0.281 Sum_probs=79.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC----CCCCCCHHH
Q ss_conf 8986668778967899999998178356202899999852321011101465533332101112444----444320121
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLD----KAQLSSNAI 85 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~lr~~~I 85 (217)
+|-|.|-||||||+..+-+ +.+||.++| |+++.=......+.. ..-...+ ..++|+-
T Consensus 3 lvIVTGlSGAGKsvAl~~l-EDlGyycvD---------------NLPp~Llp~~~~~~~-~~~~~~~kvAv~iDiRs~-- 63 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL-EDLGYYCVD---------------NLPPQLLPKLADLML-TLESRITKVAVVIDVRSR-- 63 (286)
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCEEEEC---------------CCCHHHHHHHHHHHH-HCCCCCCEEEEEEECCCC--
T ss_conf 6999568887688999999-745804535---------------899889999999976-305677527999961450--
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEE-EEEECCHHHHHHHHHHHHHHHHCCCCHHH-
Q ss_conf 0011112205789999887888876303884620641255663038868-99844888899998667765211135699-
Q gi|254780457|r 86 ANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIK-FYVTASLDIRARRRYNEMVSRGEKVDYVK- 163 (217)
Q Consensus 86 ~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~K-ifL~As~e~RA~RR~~el~~~g~~~~~~e- 163 (217)
+.+...+++...| ..+. + -+++ +||+|+-++ --+||.|-... -..+-..
T Consensus 64 ----~~~~~l~~~l~~l-------~~~~-~---------------~~~~iLFLeA~~~~-Lv~RY~etRR~-HPL~~~~~ 114 (286)
T COG1660 64 ----EFFGDLEEVLDEL-------KDNG-D---------------IDPRVLFLEADDET-LVRRYSETRRS-HPLSEDGL 114 (286)
T ss_pred ----HHHHHHHHHHHHH-------HHCC-C---------------CCCEEEEEECCHHH-HHHHHHHHHHC-CCCCCCCC
T ss_conf ----3178899999999-------8557-9---------------87249999786457-99887552002-88876672
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999999985610236757853799739997789898999999999999
Q gi|254780457|r 164 ILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 164 v~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
++..|.. -..-.+||+-..| .+||||+|+..|-=+.|...+.
T Consensus 115 l~~~I~~-----ERelL~pLk~~A~-~vIDTs~ls~~~Lr~~i~~~f~ 156 (286)
T COG1660 115 LLEAIAK-----ERELLAPLREIAD-LVIDTSELSVHELRERIRTRFL 156 (286)
T ss_pred HHHHHHH-----HHHHHHHHHHHHH-HEEECCCCCHHHHHHHHHHHHH
T ss_conf 7899999-----9998887887766-2765566889999999999970
No 100
>PRK13976 thymidylate kinase; Provisional
Probab=98.10 E-value=7.8e-05 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=23.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1898666877896789999999817
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
|-|++.|.=||||||.+++|++.|.
T Consensus 1 mfIvfEGiDGsGKsTq~~~L~~~L~ 25 (202)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLS 25 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9899989999989999999999998
No 101
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.08 E-value=0.00019 Score=47.45 Aligned_cols=147 Identities=23% Similarity=0.359 Sum_probs=83.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----EEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 9866687789678999999981783-----56202899999852321011101465533332101112444444320121
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFH-----YLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAI 85 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~-----~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I 85 (217)
|.|-|.+||||||.|+.|+++|.-. ++.+..+-.... ..+
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~~d~~~~~~~---------~~~-------------------------- 46 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSEKNIDNIILGTDLIRESFP---------VWK-------------------------- 46 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHH---------HCC--------------------------
T ss_conf 789678999899999999999998299659965520021200---------033--------------------------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC---------------CCHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 00111122057899998878888763038846206---------------412556630388689984488889999866
Q gi|254780457|r 86 ANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG---------------RDIGTIIFPDARIKFYVTASLDIRARRRYN 150 (217)
Q Consensus 86 ~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG---------------RDigTvVfPdA~~KifL~As~e~RA~RR~~ 150 (217)
-.....+|..+....+.......-+|+|+ |..|| .-+=+|+.|+++.--+|=
T Consensus 47 ------~~~Ek~~r~~~~~~v~~~l~~~~~vI~D~~nYiKg~RYEL~clAk~~~t-----~~c~I~~~~p~e~c~~~N-- 113 (249)
T TIGR03574 47 ------EKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYNSKRRDLINIAKEYNK-----NYIIIYLKAPLDTLLRRN-- 113 (249)
T ss_pred ------HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCC-----CEEEEEECCCHHHHHHHH--
T ss_conf ------6779998999999999984337669972732788999999999998499-----869999739999999987--
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCCCCEEEEECC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 776521113569999999998561--023675785379973999778-9898999999999999874
Q gi|254780457|r 151 EMVSRGEKVDYVKILEDLRNRDNQ--DRNRSYCPLVRDKDAYFFDTS-EMDIGTMCKVAKGLIDTKL 214 (217)
Q Consensus 151 el~~~g~~~~~~ev~~~i~~RD~~--D~~R~~sPL~~a~DAi~IDTs-~lsi~ev~~~i~~~I~~kl 214 (217)
.+++++++ ++++.++..|=+. .++|=-+|| +.||++ .++.+++.+.++.+.+..+
T Consensus 114 --~~R~~~~~-~e~i~~m~~r~E~P~~~nrWdspl------f~i~~~~~~~~~~i~~~l~e~~~~~~ 171 (249)
T TIGR03574 114 --IERGEKIP-NEVIKDMYEKFDEPGTKYSWDLPD------ITIDTTKKIDYNEILEEILEISENKL 171 (249)
T ss_pred --HHCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCC------EEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf --60689999-999999999707999898655781------68428988899999999999851479
No 102
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.98 E-value=0.00013 Score=48.56 Aligned_cols=166 Identities=20% Similarity=0.277 Sum_probs=77.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHHHHHHHHHC---CCC---HHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 189866687789678999999981-783562028999998523210---111---0146553333210111244444432
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEY-GFHYLDTGLIYRAVAKNILDA---GIS---LDDEKMAIKIAQNIVLSNLDKAQLS 81 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l-~~~~ldtG~~YR~~a~~~~~~---~~~---~~~~~~~~~~~~~i~~~~~~~~~lr 81 (217)
-+|.+-|||||||+|+.+.|.+++ ++.+.= +..|-..-.. |.+ .+.+.+......+-++.. .+.+
T Consensus 2 ~livl~GpsG~GK~tl~~~l~~~~~~~~~~v-----s~TTR~~R~gE~dG~dY~Fvs~~~F~~~i~~~~FlE~---~~~~ 73 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSI-----SATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEW---AEVH 73 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEE-----ECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEE---EEEC
T ss_conf 3999989998899999999997689944887-----0446897998778873478508999999864964887---6771
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHH----HHHCCCCEEEEEEC-CHHHHHHHHHHHHHHHH
Q ss_conf 01210011112205789999887888876303884620641255----66303886899844-88889999866776521
Q gi|254780457|r 82 SNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGT----IIFPDARIKFYVTA-SLDIRARRRYNEMVSRG 156 (217)
Q Consensus 82 ~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigT----vVfPdA~~KifL~A-s~e~RA~RR~~el~~~g 156 (217)
..--+. ....|+ +...+.+.+|++.-=-|. .-+|++ +-||+.+ |.++..+| |..+|
T Consensus 74 g~~YGt------~~~~i~--------~~~~~gk~vil~id~~G~~~lk~~~~~~-~~IfI~pps~~~L~~R----L~~Rg 134 (180)
T TIGR03263 74 GNYYGT------PKSPVE--------EALAAGKDVLLEIDVQGARQVKKKFPDA-VSIFILPPSLEELERR----LRKRG 134 (180)
T ss_pred CCCCCC------CHHHHH--------HHHHHCCCEEEECCHHHHHHHHHHCCCE-EEEEEECCCHHHHHHH----HHHCC
T ss_conf 676357------479999--------9996099899987899999999758864-8999968899999999----99648
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 1135699999999985610236757853799739997789898999999999999
Q gi|254780457|r 157 EKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 157 ~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
. .+-+++..- ..|...+..- ++ .-|.+++ |+ +++++++.+.++|.
T Consensus 135 ~-e~~~~i~~R-l~~a~~E~~~--~~---~fD~vIv-Nd--dle~a~~~l~~ii~ 179 (180)
T TIGR03263 135 T-DSEEVIERR-LAKAKKEIAH--AD---EFDYVIV-ND--DLEKAVEELKSIIL 179 (180)
T ss_pred C-CCHHHHHHH-HHHHHHHHHH--HH---CCCEEEE-CC--CHHHHHHHHHHHHC
T ss_conf 9-998999999-9999999987--74---3999998-97--99999999999971
No 103
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.94 E-value=0.00072 Score=44.03 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=80.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
Q ss_conf 189866687789678999999981783562028-9999985232101110146553333210111244444432012100
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL-IYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIAN 87 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~-~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~ 87 (217)
-||-..|+|.|||||+|+.|-..|.-+|+.-|. -|+.. .. ... ... .....++. .
T Consensus 3 ~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~--------~p-------~~~---~~~--~~~~~~~~-~--- 58 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA--------LP-------LKC---QDA--EGGIEFDG-D--- 58 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH--------CC-------CCC---CCC--CCCCCCCC-C---
T ss_conf 499986899898899999999847675688418589886--------76-------313---687--54223487-7---
Q ss_pred CCCCCCHHHHHHHHHHHHHHH---HHHHCCCEEEEC----C----CHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 111122057899998878888---763038846206----4----12556630388-68998448888999986677652
Q gi|254780457|r 88 VASQVASIDSVRDALIDIQRS---FAQNKLGVILDG----R----DIGTIIFPDAR-IKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 88 ~~S~iA~~p~VR~~l~~~Qr~---~~~~~~g~V~EG----R----DigTvVfPdA~-~KifL~As~e~RA~RR~~el~~~ 155 (217)
..+..-|.++..+--+.+. ++....++|+|. + |+- .+|-.-+ +=+=+.|++++=.+|... .
T Consensus 59 --~~~~~g~~~~~~~~~~~~~iaa~a~aG~nvIvD~v~~~~~~l~d~~-~~L~g~~v~~VGV~C~l~~l~~RE~~----R 131 (175)
T cd00227 59 --GGVSPGPEFRLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCW-RSFVGLDVLWVGVRCPGEVAEGRETA----R 131 (175)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHH-HHHCCCCEEEEEEECCHHHHHHHHHH----C
T ss_conf --6635415699999999999999997799889863123808899999-98579927999987899999999874----5
Q ss_pred HCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 111-3569999999998561023675785379973999778989899999999999
Q gi|254780457|r 156 GEK-VDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLI 210 (217)
Q Consensus 156 g~~-~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I 210 (217)
|.- .- ..++.. ..-|.+. .-| +.||||.++++|+-+.|...+
T Consensus 132 gDR~~G-------~A~~q~---~~VH~~~--~YD-leVDTs~~sp~eCA~~I~~~l 174 (175)
T cd00227 132 GDRVPG-------QARKQA---RVVHAGV--EYD-LEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred CCCCCC-------HHHHHH---HHHHCCC--CCC-EEEECCCCCHHHHHHHHHHHH
T ss_conf 899964-------678899---9843599--885-687799999999999999971
No 104
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=97.93 E-value=0.00031 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.5
Q ss_pred EECCCCCCHHHHHHHHHHHHC
Q ss_conf 666877896789999999817
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~ 33 (217)
|.|+-||||||.+++|+++|.
T Consensus 1 ~EGiDGsGKsTq~~~L~~~L~ 21 (186)
T pfam02223 1 IEGLDGAGKTTQAELLKERLK 21 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
T ss_conf 979999899999999999999
No 105
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=97.92 E-value=0.0019 Score=41.49 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=80.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
Q ss_conf 89866687789678999999981783562028--9999985232101110146553333210111244444432012100
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL--IYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIAN 87 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~--~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~ 87 (217)
||-..|||.|||||+|+.|-..|.-+|+.-|. +..++. . + ....-.+++-...+. +
T Consensus 3 II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p---------~-------~--~~~~~~gl~~~~~~~-~--- 60 (174)
T pfam07931 3 IILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVEAMP---------P-------K--RQDSGDGLEWSTVGP-V--- 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCC---------C-------C--CCCCCCCCCCCCCCC-C---
T ss_conf 9997489988879999999984747467642858887677---------1-------1--258877766366665-2---
Q ss_pred CCCCCCHHHHHHHHHHHHHH---HHHHHCCCEEEEC-----CCHHH---HHHCCCC-EEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 11112205789999887888---8763038846206-----41255---6630388-68998448888999986677652
Q gi|254780457|r 88 VASQVASIDSVRDALIDIQR---SFAQNKLGVILDG-----RDIGT---IIFPDAR-IKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 88 ~~S~iA~~p~VR~~l~~~Qr---~~~~~~~g~V~EG-----RDigT---vVfPdA~-~KifL~As~e~RA~RR~~el~~~ 155 (217)
.-|..+...-.+.+ .++....++|+|. ...-. .+|-.-+ +=+=+.|++++-.+|.. +...+
T Consensus 61 ------~g~~~~~~~~~~~~~iaa~a~~G~nvIvD~v~~~~~~l~d~~~~~L~g~~v~~VGV~Cpleil~~RE~-~RgDR 133 (174)
T pfam07931 61 ------IGPEFPLFEAAFYEAVAAMARAGNNVIVDDVILSGEWLQDCLQRLLSGLDVLFVGVRCPLEVLERREI-ERGDR 133 (174)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH-HCCCC
T ss_conf ------35669999999999999999779998996546693789999999858981799998789999999987-36999
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 1113569999999998561023675785379973999778989899999999999
Q gi|254780457|r 156 GEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLI 210 (217)
Q Consensus 156 g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I 210 (217)
..- .. |-..+ .-|.+. .-| +.||||.++++|+-..|.+.+
T Consensus 134 --~~G-------~A-~~q~~--~VH~~~--~YD-levDTs~~s~~ecA~~I~~~l 173 (174)
T pfam07931 134 --VPG-------LA-AWQAE--AVHAGV--EYD-LEVDTSHQTPEECARRIRSRL 173 (174)
T ss_pred --CCC-------HH-HHHHH--HHCCCC--CCC-EEEECCCCCHHHHHHHHHHHH
T ss_conf --965-------55-78998--602599--986-686799999999999999973
No 106
>KOG3347 consensus
Probab=97.87 E-value=0.00014 Score=48.27 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=79.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
+-|-|-|++|+||||+|..||+.+||.|++-|-+-+ +++.-. ..... +
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vk-------En~l~~-------gyDE~------------------y 55 (176)
T KOG3347 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVK-------ENNLYE-------GYDEE------------------Y 55 (176)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCEEEHHHHHH-------HHCCHH-------CCCCC------------------C
T ss_conf 887986799988025999999973985674556776-------611021-------02322------------------3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHHHHCC-----CCH
Q ss_conf 111220578999988788887630388462064125566303--8868998448888999986677652111-----356
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPD--ARIKFYVTASLDIRARRRYNEMVSRGEK-----VDY 161 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPd--A~~KifL~As~e~RA~RR~~el~~~g~~-----~~~ 161 (217)
-+.+--...|++.|-.+.++ +|.|+|=.-+ -.||. -|+=|-|+|+-++==.| |+.+|-+ .+.
T Consensus 56 ~c~i~DEdkv~D~Le~~m~~-----Gg~IVDyHgC--d~FperwfdlVvVLr~~~s~LY~R----L~sRgY~e~Ki~eNi 124 (176)
T KOG3347 56 KCHILDEDKVLDELEPLMIE-----GGNIVDYHGC--DFFPERWFDLVVVLRTPNSVLYDR----LKSRGYSEKKIKENI 124 (176)
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCC--CCCCHHHEEEEEEEECCCHHHHHH----HHHCCCCHHHHHHHC
T ss_conf 67545678999888898756-----8848860056--765011355799994684599999----997588888876510
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999999999856102367578537997399977898989999999999
Q gi|254780457|r 162 VKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGL 209 (217)
Q Consensus 162 ~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~ 209 (217)
+--+-.+..-+.++ +.+|= ++..-..-+.++..+.+...
T Consensus 125 ecEIfgv~~eea~e---Sy~~~------iV~eL~s~~~Eem~~ni~ri 163 (176)
T KOG3347 125 ECEIFGVVLEEARE---SYSPK------IVVELQSETKEEMESNISRI 163 (176)
T ss_pred CHHHHHHHHHHHHH---HCCCC------CEEECCCCCHHHHHHHHHHH
T ss_conf 15899999999998---71874------21334767789999989999
No 107
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.86 E-value=0.00023 Score=46.99 Aligned_cols=170 Identities=18% Similarity=0.272 Sum_probs=79.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHH---HCCCC---HHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 881898666877896789999999817835620289999985232---10111---014655333321011124444443
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNIL---DAGIS---LDDEKMAIKIAQNIVLSNLDKAQL 80 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~---~~~~~---~~~~~~~~~~~~~i~~~~~~~~~l 80 (217)
+.++|.+.||||+||||+.++|=++.++.|-=|- .|-..- .+|++ .+.+++...+..+-++. -.+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~-----TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE---~a~~ 74 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSA-----TTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLE---WAEY 74 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCEEEEEEE-----CCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEE---EEEE
T ss_conf 8639999899888889999999863493799985-----2679999875780247577999999875687478---8777
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE----CCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 201210011112205789999887888876303884620----6412556630388689984488889999866776521
Q gi|254780457|r 81 SSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILD----GRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRG 156 (217)
Q Consensus 81 r~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E----GRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g 156 (217)
+++--+. ..+.|.. .+ .....+++| |=-.--.-||+| +-||+...-.+..+||..- +|
T Consensus 75 ~gnyYGT------~~~~ve~-------~~-~~G~~vildId~qGa~qvk~~~p~~-v~IFi~pPs~eeL~~RL~~---Rg 136 (191)
T COG0194 75 HGNYYGT------SREPVEQ-------AL-AEGKDVILDIDVQGALQVKKKMPNA-VSIFILPPSLEELERRLKG---RG 136 (191)
T ss_pred CCCCCCC------CHHHHHH-------HH-HCCCEEEEEEEHHHHHHHHHHCCCE-EEEEECCCCHHHHHHHHHC---CC
T ss_conf 1973248------6889999-------98-6699089998539999999749996-9999759999999999971---59
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 11356999999999856102367578537997399977898989999999999998
Q gi|254780457|r 157 EKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 157 ~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
.+ +.+.+..-+ +....+.. +. . --| .+|.+++ +++.++.+..+|..
T Consensus 137 td-s~e~I~~Rl-~~a~~Ei~--~~--~-~fd-yvivNdd--~e~a~~~l~~ii~a 182 (191)
T COG0194 137 TD-SEEVIARRL-ENAKKEIS--HA--D-EFD-YVIVNDD--LEKALEELKSIILA 182 (191)
T ss_pred CC-CHHHHHHHH-HHHHHHHH--HH--H-HCC-EEEECCC--HHHHHHHHHHHHHH
T ss_conf 99-799999999-99999998--88--7-599-9998954--99999999999999
No 108
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=97.86 E-value=0.00036 Score=45.81 Aligned_cols=166 Identities=22% Similarity=0.292 Sum_probs=74.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CCEEECCHHHHHHHHHHHH---CCCC---HHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 898666877896789999999817--8356202899999852321---0111---0146553333210111244444432
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG--FHYLDTGLIYRAVAKNILD---AGIS---LDDEKMAIKIAQNIVLSNLDKAQLS 81 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~--~~~ldtG~~YR~~a~~~~~---~~~~---~~~~~~~~~~~~~i~~~~~~~~~lr 81 (217)
.|.+-|||||||+|+.+.|.+.+. |.+.=| +.|-..-. .|.+ .+.+.+......+-++.. .+..
T Consensus 3 livl~GPSG~GK~tl~~~L~~~~~~~~~~~vs-----~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~FlE~---~~~~ 74 (182)
T pfam00625 3 PIVLSGPSGVGKSHIKKALLDEYPEKFGYSVS-----HTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEH---AEFN 74 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEE-----EECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH---HHHC
T ss_conf 69998989999999999999848667344576-----554799987878965799658999998754377762---6407
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH----HHCCCCEEEEEEC-CHHHHHHHHHHHHHHHH
Q ss_conf 012100111122057899998878888763038846206412556----6303886899844-88889999866776521
Q gi|254780457|r 82 SNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTI----IFPDARIKFYVTA-SLDIRARRRYNEMVSRG 156 (217)
Q Consensus 82 ~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTv----VfPdA~~KifL~A-s~e~RA~RR~~el~~~g 156 (217)
...-+. ....|.. ...+...+|++.---|-. -+|++ +-||+.+ |+++-.+| . ..+|
T Consensus 75 g~~YGt------~~~~I~~--------~~~~g~~vvl~id~~g~~~lk~~~~~~-~~IfI~pps~~~L~~R-L---~~Rg 135 (182)
T pfam00625 75 GNYYGT------SKEAIEQ--------IAESGKICILDVDIQGVKQLRKAELSP-ISVFIKPPSLKVLQRR-L---KGRG 135 (182)
T ss_pred CCCEEE------CHHHHHH--------HHHCCCEEEEEECHHHHHHHHHHCCCC-EEEEEECCCHHHHHHH-H---HHCC
T ss_conf 972564------0277799--------986799699997289999998749574-8999938799999999-9---8148
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 11356999999999856102367578537997399977898989999999999998
Q gi|254780457|r 157 EKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 157 ~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
. .+-+++..-+ .+...+.. +.+ .-|. +|.|. ++++++..+.++|+.
T Consensus 136 ~-~~~~~i~~Rl-~~a~~e~~--~~~---~fD~-vIvNd--dle~a~~~l~~ii~a 181 (182)
T pfam00625 136 T-EQEEKINKRM-EAAEQEFQ--HYA---EFDY-IIVND--DLDEAYKKLKEILEA 181 (182)
T ss_pred C-CCHHHHHHHH-HHHHHHHH--HHH---HCCE-EEECC--CHHHHHHHHHHHHHC
T ss_conf 8-8899999999-99999973--486---1999-99898--999999999999973
No 109
>KOG3220 consensus
Probab=97.79 E-value=0.00089 Score=43.48 Aligned_cols=120 Identities=22% Similarity=0.374 Sum_probs=67.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCC--------------HHHHHHHHHHHHHCCCCC
Q ss_conf 189866687789678999999981783562028999998523210111--------------014655333321011124
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGIS--------------LDDEKMAIKIAQNIVLSN 74 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~ 74 (217)
+++++.|-.||||||+++.+- .+|++-+|+--+=|-+- +.|.+ +.+-.+..+......|++
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv----~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~ 76 (225)
T KOG3220 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVV----EPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSD 76 (225)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCCEECHHHHHHHHH----CCCCHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHCC
T ss_conf 699940565667379999999-74995762789999985----5998078999998484000568841689986787089
Q ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHHH-HHHHHHHHHCCCEEEECCCHHHHHHCCC------CEEEEEECCHHHHHHH
Q ss_conf 44444320121001111220578999988-7888876303884620641255663038------8689984488889999
Q gi|254780457|r 75 LDKAQLSSNAIANVASQVASIDSVRDALI-DIQRSFAQNKLGVILDGRDIGTIIFPDA------RIKFYVTASLDIRARR 147 (217)
Q Consensus 75 ~~~~~lr~~~I~~~~S~iA~~p~VR~~l~-~~Qr~~~~~~~g~V~EGRDigTvVfPdA------~~KifL~As~e~RA~R 147 (217)
-+.-++.+ + =..|+||..+. ++.+-++...+=+|+|= -.+=++ ..-+-++|+-+.--+|
T Consensus 77 ~~~r~~Ln---~------IthP~Ir~em~ke~~~~~l~G~r~ivlDi-----PLLFE~~~~~~~~~tvvV~cd~~~Ql~R 142 (225)
T KOG3220 77 PKKRQALN---K------ITHPAIRKEMFKEILKLLLRGYRVIVLDI-----PLLFEAKLLKICHKTVVVTCDEELQLER 142 (225)
T ss_pred HHHHHHHH---H------CCCHHHHHHHHHHHHHHHHCCCEEEEEEC-----HHHHHHHHHHHEEEEEEEEECCHHHHHH
T ss_conf 88999987---3------13389999999999999966882899922-----6888876774532589999890899999
No 110
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.78 E-value=0.00019 Score=47.51 Aligned_cols=134 Identities=18% Similarity=0.140 Sum_probs=63.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE---------EECCHHHHHHH----HHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 55881898666877896789999999817835---------62028999998----523210111014655333321011
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHY---------LDTGLIYRAVA----KNILDAGISLDDEKMAIKIAQNIV 71 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~---------ldtG~~YR~~a----~~~~~~~~~~~~~~~~~~~~~~i~ 71 (217)
...++||+|-||+|+||||+|+.|+.-+.-.. .|-..++.++= ++..+.-+.--|.....++...+.
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK 158 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVK 158 (283)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 88887999605766557789999999996388987337871454546767752212200189985356899999999996
Q ss_pred CCCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC------CHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 124444-44320121001111220578999988788887630388462064------12556630388689984488889
Q gi|254780457|r 72 LSNLDK-AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGR------DIGTIIFPDARIKFYVTASLDIR 144 (217)
Q Consensus 72 ~~~~~~-~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGR------DigTvVfPdA~~KifL~As~e~R 144 (217)
-...+. .-.++..+-. ...=|......+.=+|+||= +=-+.+-+=.|+.||++|+.+.
T Consensus 159 ~~~~~v~aPvysh~~yD--------------~vp~~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~- 223 (283)
T COG1072 159 AGKPDVFAPVYSHLIYD--------------PVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEEL- 223 (283)
T ss_pred CCCCCCCCCCCCCCCCC--------------CCCCCEEECCCCCEEEEECHHHHCCCCCCCCCCCCCEEEEEECCCHHH-
T ss_conf 59985124323311025--------------678850205899889991526625898511125622179993699999-
Q ss_pred HHHHHHHHH
Q ss_conf 999866776
Q gi|254780457|r 145 ARRRYNEMV 153 (217)
Q Consensus 145 A~RR~~el~ 153 (217)
.++||.+.-
T Consensus 224 le~wyi~Rf 232 (283)
T COG1072 224 LEERYIERF 232 (283)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 111
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.76 E-value=0.00035 Score=45.93 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=35.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCE--EECCHHHHHHH
Q ss_conf 5881898666877896789999999817835--62028999998
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHY--LDTGLIYRAVA 47 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~--ldtG~~YR~~a 47 (217)
+++-+|.|-||.|||||.+|-.||++|+..- .||-.+||.+.
T Consensus 2 ~~~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~QvYk~l~ 45 (304)
T PRK00091 2 MKPKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQVYRGMD 45 (304)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCCC
T ss_conf 99977999898865899999999998799899412688749998
No 112
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.72 E-value=0.00055 Score=44.71 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=72.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCCEEECCHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 89866687789678999999981---783562028999998523210111014--6553333210111244444432012
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEY---GFHYLDTGLIYRAVAKNILDAGISLDD--EKMAIKIAQNIVLSNLDKAQLSSNA 84 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l---~~~~ldtG~~YR~~a~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~lr~~~ 84 (217)
.|-..|++||||||.||.||+.| +|.-++-|+=|+..-..-...++--+. +.+...... ......+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~r-lldSalk-------- 73 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVER-LLDSALK-------- 73 (261)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHH-HHHHHHC--------
T ss_conf 6998269998801789999999997200112132014541233132403799999999888999-9999863--------
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 10011112205789999887888876303884620641255663038868998448888999986677652111356999
Q gi|254780457|r 85 IANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKI 164 (217)
Q Consensus 85 I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev 164 (217)
+.+| .+-. -++...+-|+++...+. .----+=||+-|++++=-+| + ..+|+... +||
T Consensus 74 -n~~V-IvDd----tNYyksmRrqL~ceak~------------~~tt~ciIyl~~plDtc~rr--N--~ergepip-~Ev 130 (261)
T COG4088 74 -NYLV-IVDD----TNYYKSMRRQLACEAKE------------RKTTWCIIYLRTPLDTCLRR--N--RERGEPIP-EEV 130 (261)
T ss_pred -CEEE-EEEC----CCHHHHHHHHHHHHHHH------------CCCCEEEEEECCCHHHHHHH--H--CCCCCCCC-HHH
T ss_conf -6499-9706----32888999999999986------------37865999972688999886--0--24799998-999
Q ss_pred HHHHHHHHH--HCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 999999856--10236757853799739997789
Q gi|254780457|r 165 LEDLRNRDN--QDRNRSYCPLVRDKDAYFFDTSE 196 (217)
Q Consensus 165 ~~~i~~RD~--~D~~R~~sPL~~a~DAi~IDTs~ 196 (217)
++.+..|=+ .-++|=-+|| ++||++.
T Consensus 131 l~qly~RfEePn~~~rWDspl------l~id~~d 158 (261)
T COG4088 131 LRQLYDRFEEPNPDRRWDSPL------LVIDDSD 158 (261)
T ss_pred HHHHHHHHCCCCCCCCCCCCE------EEEECCC
T ss_conf 999999614999776556763------7886355
No 113
>PRK04040 adenylate kinase; Provisional
Probab=97.68 E-value=0.00029 Score=46.41 Aligned_cols=160 Identities=20% Similarity=0.245 Sum_probs=89.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH--CCCEEECCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 189866687789678999999981--7835620289999985232101-1101465533332101112444444320121
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEY--GFHYLDTGLIYRAVAKNILDAG-ISLDDEKMAIKIAQNIVLSNLDKAQLSSNAI 85 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l--~~~~ldtG~~YR~~a~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I 85 (217)
+++-|-|-+|+||||+.+.+.++| +|.+++-|-+-.-.|... + +.--|+ .-+ +..
T Consensus 3 k~VvvtGiPGvGKTTv~~~~~~~l~~~~~~vn~G~~M~e~A~~~---glv~~RDe--mRk----L~~------------- 60 (189)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEE---GLVEHRDE--MRK----LPL------------- 60 (189)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHC---CCCCCHHH--HCC----CCH-------------
T ss_conf 18999758988789999999997235875986779999999981---77347788--747----999-------------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHH---H---CCCEEEECCC-----HHHH-HHC-------CCCEEEEEECCHHHHHH
Q ss_conf 00111122057899998878888763---0---3884620641-----2556-630-------38868998448888999
Q gi|254780457|r 86 ANVASQVASIDSVRDALIDIQRSFAQ---N---KLGVILDGRD-----IGTI-IFP-------DARIKFYVTASLDIRAR 146 (217)
Q Consensus 86 ~~~~S~iA~~p~VR~~l~~~Qr~~~~---~---~~g~V~EGRD-----igTv-VfP-------dA~~KifL~As~e~RA~ 146 (217)
+.-..+|+..++ . ...+++|-.= -|.. =|| +-+.=+++.|++++=-.
T Consensus 61 --------------~~q~~lQ~~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~ivlieA~P~eIl~ 126 (189)
T PRK04040 61 --------------EEQKELQREAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEELNPDVIVLIEADPDEILM 126 (189)
T ss_pred --------------HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf --------------999999999999999835787289944520026886778998999986699889999758899999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC----CCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 98667765211135699999999985610236757----853799739997789898999999999999
Q gi|254780457|r 147 RRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYC----PLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 147 RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~s----PL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
||..+........+.+++.. +++.||..+ =|.-+. ..+|.|-+--+++.++.+++.+.
T Consensus 127 RR~~D~tR~RD~es~~~I~~------hq~~nR~~a~ayavltga~-Vkiv~N~e~~~e~Aa~~iv~~l~ 188 (189)
T PRK04040 127 RRLRDPTRRRDVETEESIEE------HQEMNRAAAMAYAVLTGAT-VKIVENHEGLLEEAAEEIVEVLR 188 (189)
T ss_pred HHHCCCCCCCCCCCHHHHHH------HHHHHHHHHHHHHHHHCCE-EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 88425566898788999999------9999999999999973984-89997899988999999999861
No 114
>PRK04195 replication factor C large subunit; Provisional
Probab=97.64 E-value=6.5e-05 Score=50.24 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=25.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 88189866687789678999999981783562
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
|.++++ ||+|+||||+|..||+++||..+.
T Consensus 41 k~lLL~--GPpGvGKTT~a~~lAk~~g~~viE 70 (403)
T PRK04195 41 KALLLY--GPPGVGKTSLAHALANDYGWEVIE 70 (403)
T ss_pred CEEEEE--CCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 469988--939987999999999984998599
No 115
>PRK06762 hypothetical protein; Provisional
Probab=97.64 E-value=0.0034 Score=40.00 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=78.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE--EECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
Q ss_conf 898666877896789999999817835--620289999985232101110146553333210111244444432012100
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHY--LDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIAN 87 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~--ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~ 87 (217)
.|-|=|.|||||||+||.|-++||-.. ++---+=|. .+...|.+. +
T Consensus 4 LIiiRGNSgSGKtT~Ak~L~~~~G~g~lLvsQD~vRR~-------------------------mLr~kD~~g-------~ 51 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD-------------------------MLRVKDGPG-------N 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHH-------------------------HHHCCCCCC-------C
T ss_conf 89997888888789999999986888578537589999-------------------------840557799-------9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEECC-------CHHHH---HHCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 1111220578999988788887630-388462064-------12556---630388689984488889999866776521
Q gi|254780457|r 88 VASQVASIDSVRDALIDIQRSFAQN-KLGVILDGR-------DIGTI---IFPDARIKFYVTASLDIRARRRYNEMVSRG 156 (217)
Q Consensus 88 ~~S~iA~~p~VR~~l~~~Qr~~~~~-~~g~V~EGR-------DigTv---VfPdA~~KifL~As~e~RA~RR~~el~~~g 156 (217)
+.++.+. ..-.|+.. ..-+|+||= +|=.. -|++.-+-+|++-|.++- -||+..-.+ .
T Consensus 52 -----~~i~Li~-----~~~~yg~~~~~~VIlEGIL~a~~Yg~ml~~l~~~~~~~~~~YY~Di~FeET-lrRH~tr~~-~ 119 (166)
T PRK06762 52 -----LSIDLIE-----QLVRYGLQHCEFVILEGILNSDRYGPMLKELIHLFGGNAYTYYFDLSFEET-VRRHNTRPK-S 119 (166)
T ss_pred -----CCHHHHH-----HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH-HHHHHCCCC-C
T ss_conf -----7868999-----999999856998999741004489999999998657866999994877999-998746776-5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 11356999999999856102367578537997399977898989999999999998
Q gi|254780457|r 157 EKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 157 ~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
.+..-++ .++=-++.+-|..+.. .+=+..++++++++.|++-|..
T Consensus 120 ~~Fg~~~---------mr~W~~~~D~L~~~~E--~~~~~~~tl~~~v~~Il~di~~ 164 (166)
T PRK06762 120 HEFGEDD---------MRRWWLPHDTLGVEGE--TIFTDELSLNDIFDAILTDIGK 164 (166)
T ss_pred CCCCHHH---------HHHHCCCCCCCCCCCC--EEECCCCCHHHHHHHHHHHHCC
T ss_conf 6769899---------9977555455599986--7857767889999999997433
No 116
>PRK07933 thymidylate kinase; Validated
Probab=97.61 E-value=0.0064 Score=38.35 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=23.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1898666877896789999999817
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
|.|++.|.=||||||.+++|+++|.
T Consensus 1 m~I~fEGiDGsGKSTq~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9899988999989999999999999
No 117
>KOG3877 consensus
Probab=97.55 E-value=7.3e-05 Score=49.96 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=29.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 5588189866687789678999999981783562
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
....-+|+++||-|||||++||.||++|||.|.-
T Consensus 68 ~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP 101 (393)
T KOG3877 68 HENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFP 101 (393)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 3365079985775467016999999971972156
No 118
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=97.50 E-value=0.00014 Score=48.26 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=27.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8189866687789678999999981783562
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
.-+.-+-|||||||||+-+.||+.|||..+.
T Consensus 45 ~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~E 75 (490)
T pfam03215 45 QLILLLTGPSGCGKSTTVKVLSKELGIEIIE 75 (490)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCEEEE
T ss_conf 3189987989988999999999975968998
No 119
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=97.47 E-value=8.8e-05 Score=49.46 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=39.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
=.|||=|||||||||+.+.|+--|.= ...++.+++.+-..+...||.+.
T Consensus 388 ~r~Ai~G~SG~GKsTLL~~L~G~l~P-------------------------------~~G~vtl~G~~~~~~~~~evrr~ 436 (566)
T TIGR02868 388 ERVAILGPSGSGKSTLLATLAGLLDP-------------------------------LQGEVTLDGVPVSSLSEDEVRRR 436 (566)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC-------------------------------CCCCEEECCCCHHHCCCCHHEHH
T ss_conf 60898668876578999999840289-------------------------------99917877732432573110000
Q ss_pred CCCCCHHHH
Q ss_conf 111220578
Q gi|254780457|r 89 ASQVASIDS 97 (217)
Q Consensus 89 ~S~iA~~p~ 97 (217)
+|.+++.|.
T Consensus 437 v~~~aQ~aH 445 (566)
T TIGR02868 437 VSVFAQDAH 445 (566)
T ss_pred EEECCCCCC
T ss_conf 031278862
No 120
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.46 E-value=8.3e-05 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 189866687789678999999981783
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFH 35 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~ 35 (217)
=.|-|=|||||||||++|++ ++|.-|
T Consensus 492 e~IGIvGpSGSGKSTLTKL~-QRLYtP 517 (703)
T TIGR01846 492 EVIGIVGPSGSGKSTLTKLL-QRLYTP 517 (703)
T ss_pred EEEEEECCCCCCHHHHHHHH-HHHCCC
T ss_conf 57998727898678999998-861488
No 121
>KOG3327 consensus
Probab=97.41 E-value=0.0039 Score=39.63 Aligned_cols=177 Identities=17% Similarity=0.179 Sum_probs=90.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 55881898666877896789999999817835620289999985232101110146553333210111244444432012
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNA 84 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~ 84 (217)
+.+.-.|-++|--.|||||.+..+-..+.-.. + ++..+.+-+...+.. ..+.....+.. ++++ ..
T Consensus 2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~-~-----~~~l~~FP~Rst~iG--k~i~~YL~k~~--dl~d-----~~ 66 (208)
T KOG3327 2 MIRGALIVLEGLDRSGKSTQCGKLVESLIPGL-D-----PAELLRFPERSTSIG--KLIDGYLRKKS--DLPD-----HT 66 (208)
T ss_pred CCCCCEEEEECCCCCCCEEEHHHHHHHHHHCC-C-----HHHHHHCCHHCCCCC--HHHHHHHHHCC--CCCH-----HH
T ss_conf 98761776532134774520667999987056-7-----577661510004411--77899987415--7737-----89
Q ss_pred HHCC--CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE-------------CCCHHHHHHCC-----CCEEEEEECCHHHH
Q ss_conf 1001--1112205789999887888876303884620-------------64125566303-----88689984488889
Q gi|254780457|r 85 IANV--ASQVASIDSVRDALIDIQRSFAQNKLGVILD-------------GRDIGTIIFPD-----ARIKFYVTASLDIR 144 (217)
Q Consensus 85 I~~~--~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E-------------GRDigTvVfPd-----A~~KifL~As~e~R 144 (217)
|-.+ +-.....+.|++ ++++ ...+|+| |=|.-++.-|+ -|+=+||+.+++.
T Consensus 67 iHLlFSAnRwe~~~~i~e-------~l~k-g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~- 137 (208)
T KOG3327 67 IHLLFSANRWEHVSLIKE-------KLAK-GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPED- 137 (208)
T ss_pred HHHHHCCCHHHHHHHHHH-------HHHC-CCEEEEECCEECCHHHHHHCCCCCCHHHCCCCCCCCCCEEEEEECCHHH-
T ss_conf 999760531667999999-------9854-9829996343010466642378862333876589898868997379899-
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99986677652111356999999999856102367578537997399977898989999999999998740
Q gi|254780457|r 145 ARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 145 A~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
|.||-.-...+-+++.+.+--....++=. |+..| .-.++|-| .++++|...|..+++.-+.
T Consensus 138 ~a~rggfG~Erye~v~fqekv~~~~q~l~----r~e~~-----~~~~vDAs-~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327 138 AARRGGFGEERYETVAFQEKVLVFFQKLL----RKEDL-----NWHVVDAS-KSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHH----HCCCC-----CEEEEECC-CCHHHHHHHHHHHHHHHCC
T ss_conf 98744765467777899999999999998----44588-----75897467-2599999999999987305
No 122
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=97.41 E-value=9.3e-05 Score=49.32 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH--CCCE
Q ss_conf 189866687789678999999981--7835
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEY--GFHY 36 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l--~~~~ 36 (217)
=.+||=|+|||||||+||+|-.-| .-.+
T Consensus 501 ~k~tiVGmSGSGKsTLaKLLV~FfePQ~~s 530 (710)
T TIGR01193 501 EKITIVGMSGSGKSTLAKLLVGFFEPQAES 530 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 548997367974899998752035899887
No 123
>KOG3308 consensus
Probab=97.39 E-value=0.00033 Score=46.07 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC-CCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 5881898666877896789999999817-835620289999985232101110146553333210111244444432012
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYG-FHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNA 84 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~-~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~ 84 (217)
+|-+||+|.|-+.|||||+||.|...|. ...++---+|---.-.-...+ ++ ....+...+++.... +.
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~-n~----~~wd~~esLdm~~fl------~~ 70 (225)
T KOG3308 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYN-NI----DNWDLLESLDMEKFL------EK 70 (225)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCC-CC----CHHCCHHHHHHHHHH------HH
T ss_conf 61899986424678776899999987368746402234675534211237-72----111013142099998------78
Q ss_pred HHCCCCCCCHHHHHHHHHHHHH----------HHHHHHCCCEEEECCCHHHHHHCC---CCEEEEEECCHHHHHHHHHHH
Q ss_conf 1001111220578999988788----------887630388462064125566303---886899844888899998667
Q gi|254780457|r 85 IANVASQVASIDSVRDALIDIQ----------RSFAQNKLGVILDGRDIGTIIFPD---ARIKFYVTASLDIRARRRYNE 151 (217)
Q Consensus 85 I~~~~S~iA~~p~VR~~l~~~Q----------r~~~~~~~g~V~EGRDigTvVfPd---A~~KifL~As~e~RA~RR~~e 151 (217)
|..+-+.=-..|+-|+.++..+ .+ +.+.+=+++||==|-.. =|. -+.+++|+++-++--+||...
T Consensus 71 ia~~l~~~~~~~~ar~~~v~~~~~~~~~~~~q~~-~~~~~iviidGfmiy~y-~p~~~~~d~~im~~~~y~~~krRr~~R 148 (225)
T KOG3308 71 IATWLDSRHNAPEAREHLVSYANFEHYAQQFQIK-AYKNHIVIIDGFMIYNY-KPQVDLFDRIIMLTLDYETCKRRREAR 148 (225)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCEEEEECCEEEEC-CHHHHHHHHHEEEECCHHHHHHHHCCC
T ss_conf 8888507555633756541166777776422752-00276799836147726-326645552102204399998762365
No 124
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.39 E-value=0.0052 Score=38.92 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=44.9
Q ss_pred HCCCEEEECCCHHHH----HHCCCCEEEEEEC-CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 038846206412556----6303886899844-88889999866776521113569999999998561023675785379
Q gi|254780457|r 112 NKLGVILDGRDIGTI----IFPDARIKFYVTA-SLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRD 186 (217)
Q Consensus 112 ~~~g~V~EGRDigTv----VfPdA~~KifL~A-s~e~RA~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a 186 (217)
+..-+++|+-=-|-. -+|++ +-||+.. |.++-.+|.. .+|. .+-+++..-+.. ...+.. .. .-
T Consensus 92 ~g~~~ildi~~~g~~~l~~~~~~~-~~Ifi~pps~e~L~~RL~----~Rg~-~~~~~i~~Rl~~-a~~e~~--~~---~~ 159 (184)
T smart00072 92 QGKHCLLDIDPQGVKQLRKAQLYP-IVIFIAPPSSEELERRLR----GRGT-ETAERIQKRLAA-AQKEAQ--EY---HL 159 (184)
T ss_pred CCCEEEEEECHHHHHHHHHHCCCC-EEEEEECCCHHHHHHHHH----CCCC-CCHHHHHHHHHH-HHHHHH--HH---HH
T ss_conf 698699996299999999858880-799993899999999997----1699-999999999999-999996--47---33
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 97399977898989999999999998
Q gi|254780457|r 187 KDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 187 ~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
-|.++++. ++++.+..+.++|+.
T Consensus 160 fd~vIvN~---dl~~a~~~l~~iI~~ 182 (184)
T smart00072 160 FDYVIVND---DLEDAYEELKEILEA 182 (184)
T ss_pred CCEEEECC---CHHHHHHHHHHHHHH
T ss_conf 99999898---999999999999985
No 125
>KOG0635 consensus
Probab=97.36 E-value=0.0037 Score=39.74 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=84.3
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHC----CCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC-C
Q ss_conf 555881898666877896789999999817----83562028999998523210111014655333321011124444-4
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYG----FHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDK-A 78 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~----~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 78 (217)
++.|.++|=|-|.|||||||+|=.|.+.|. ..|.=-|- + .-.-+.+++.|...|- .
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGD-----------------N--vRhGLN~DL~F~a~dR~E 87 (207)
T KOG0635 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGD-----------------N--VRHGLNKDLGFKAEDRNE 87 (207)
T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCC-----------------C--CCCCCCCCCCCCHHHHHH
T ss_conf 568996899742577880259999999998658658985485-----------------4--010434456765033446
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE---------ECCCHHHHHHCCCCEE-EEEECCHHHHHHHH
Q ss_conf 4320121001111220578999988788887630388462---------0641255663038868-99844888899998
Q gi|254780457|r 79 QLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVIL---------DGRDIGTIIFPDARIK-FYVTASLDIRARRR 148 (217)
Q Consensus 79 ~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~---------EGRDigTvVfPdA~~K-ifL~As~e~RA~RR 148 (217)
+||- +++||+ =|+.. |+|. --||-.....|++++= +|++..+++--.|-
T Consensus 88 NIRR------igeVaK-------------LFADa--g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635 88 NIRR------IGEVAK-------------LFADA--GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARD 146 (207)
T ss_pred HHHH------HHHHHH-------------HHHCC--CEEEEEHHCCCHHCCHHHHHHHCCCCCEEEEEECCCHHHHHCCC
T ss_conf 5788------899999-------------87325--40310021580020579999736689858887528687864148
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCC-HHHHHHHHHHHHHHH
Q ss_conf 66776521113569999999998561023675785379973-999778989-899999999999987
Q gi|254780457|r 149 YNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDTSEMD-IGTMCKVAKGLIDTK 213 (217)
Q Consensus 149 ~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDTs~ls-i~ev~~~i~~~I~~k 213 (217)
-+-|-+.- ..--....+---+|.-.|.+- |++-++..+ ++|+.++|..+.+.+
T Consensus 147 PKGLYK~A------------RaGkIKgFTGIddPYEaP~~cEi~l~~~~~~sp~~mae~iv~YL~~k 201 (207)
T KOG0635 147 PKGLYKLA------------RAGKIKGFTGIDDPYEAPLNCEIVLKSHESSSPEEMAEIIVSYLDNK 201 (207)
T ss_pred CHHHHHHH------------HCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 40478887------------45652354467886668878678974578888799999999998614
No 126
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.19 E-value=0.0003 Score=46.26 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=25.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.||.. ||+|+||||+|+.||+.+++.|+.--
T Consensus 39 s~Il~--GPPG~GKTTlA~iiA~~~~~~f~~ln 69 (417)
T PRK13342 39 SMILW--GPPGTGKTTLARIIAGATDAEFEALS 69 (417)
T ss_pred EEEEE--CCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 59988--96999899999999998689889961
No 127
>PRK05439 pantothenate kinase; Provisional
Probab=97.19 E-value=0.0014 Score=42.26 Aligned_cols=136 Identities=20% Similarity=0.309 Sum_probs=67.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-------EEEC-CHHHHHHHHH---HH-HCC-CCHHHHHHHHHHHHHCC
Q ss_conf 5588189866687789678999999981783-------5620-2899999852---32-101-11014655333321011
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFH-------YLDT-GLIYRAVAKN---IL-DAG-ISLDDEKMAIKIAQNIV 71 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~-------~ldt-G~~YR~~a~~---~~-~~~-~~~~~~~~~~~~~~~i~ 71 (217)
.+.++||.|-|-.|+||||+|+.|..-|.-- .+.| |-+|--.-+. ++ +.| +.-.|...+..+..++.
T Consensus 83 ~~~PfIIGIaGSVAVGKSTtARlLq~LL~r~~~~~~V~LvTTDGFLypNa~L~~rglm~RKGFPESYD~~~Ll~Fl~~vK 162 (312)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVDLVTTDGFLYPNAELKERGLMKRKGFPESYDMRALLRFLSDVK 162 (312)
T ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 89998999762010262889999999995078999458993466557868998767712478985447999999999997
Q ss_pred CCCCC-CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC-------CHHHHHH-CC-CCEEEEEECCH
Q ss_conf 12444-444320121001111220578999988788887630388462064-------1255663-03-88689984488
Q gi|254780457|r 72 LSNLD-KAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGR-------DIGTIIF-PD-ARIKFYVTASL 141 (217)
Q Consensus 72 ~~~~~-~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGR-------DigTvVf-Pd-A~~KifL~As~ 141 (217)
-.... ..-.+|..+-..+. =+...+..+.=+|+||= |-...+| .| =|+.||++|+.
T Consensus 163 sG~~~v~aPvYSH~~YDIvp--------------~~~~~v~~PDILIvEGlNvLQ~~~~~~~~~~vSDffDfSIYvDA~~ 228 (312)
T PRK05439 163 SGKPNVKAPVYSHLIYDIVP--------------GEYQTVDQPDILIVEGLNVLQTGDDDNHRLFVSDFFDFSIYVDADE 228 (312)
T ss_pred CCCCCCCCEEECHHHHHCCC--------------CCEEEECCCCEEEEECHHHCCCCCCCCCCCCCCCCEEEEEEEECCH
T ss_conf 69987664033367764279--------------9706973799899915121447976788655224313899960888
Q ss_pred HHHH---HHHHHHHHH
Q ss_conf 8899---998667765
Q gi|254780457|r 142 DIRA---RRRYNEMVS 154 (217)
Q Consensus 142 e~RA---~RR~~el~~ 154 (217)
+-=- --||..|..
T Consensus 229 ~~Ie~WYi~RFl~L~~ 244 (312)
T PRK05439 229 DLIEKWYIERFLKLRE 244 (312)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999999
No 128
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=97.16 E-value=0.0036 Score=39.88 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=80.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC-C---EEEC--------CHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHCCC
Q ss_conf 818986668778967899999998178-3---5620--------28999998523210111014---6553333210111
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGF-H---YLDT--------GLIYRAVAKNILDAGISLDD---EKMAIKIAQNIVL 72 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~-~---~ldt--------G~~YR~~a~~~~~~~~~~~~---~~~~~~~~~~i~~ 72 (217)
.|=|+|-|+=||||||++..|++.|.= . .+=| |.+=|.+-.-++..+..+-. +..++...+
T Consensus 2 ~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR---- 77 (211)
T TIGR00041 2 GMFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVLFTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAADR---- 77 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----
T ss_conf 7458885115875899999999997751383478871899987899999999987414666335999999999858----
Q ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE------------CCCHHHHH-------HCC---
Q ss_conf 24444443201210011112205789999887888876303884620------------64125566-------303---
Q gi|254780457|r 73 SNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILD------------GRDIGTII-------FPD--- 130 (217)
Q Consensus 73 ~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E------------GRDigTvV-------fPd--- 130 (217)
.-..-.++..+.+ .+. +..-||+| +|-+|... +|.
T Consensus 78 -------------------~~HL~~~~~~ik~---al~-~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~ 134 (211)
T TIGR00041 78 -------------------HDHLEHVEEKIKP---ALA-QGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMK 134 (211)
T ss_pred -------------------HHHHHHHHHHHHH---HHH-CCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf -------------------9999978987788---986-69679984112435777542256888899999775211358
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-CCCC--C----CCEEEEECCCCCHHHHH
Q ss_conf 886899844888899998667765211135699999999985610236757-8537--9----97399977898989999
Q gi|254780457|r 131 ARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYC-PLVR--D----KDAYFFDTSEMDIGTMC 203 (217)
Q Consensus 131 A~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~s-PL~~--a----~DAi~IDTs~lsi~ev~ 203 (217)
=|+=|||+.++++--+|=..- | .-+... ....++.|...+-|... -|.. . +..++||.++.++++|-
T Consensus 135 Pd~t~~Ld~d~e~al~R~~~~----g-~~~~~~-~~~~e~~d~~~~v~~~Yl~L~~~~~rkGD~~~~~~Da~~~~~~~v~ 208 (211)
T TIGR00041 135 PDLTILLDIDPEVALERLRKR----G-EDELLD-REEFEKLDFFEKVRERYLELADKFERKGDKKIVVIDATNSGVEEVE 208 (211)
T ss_pred CCEEEEEEECHHHHHHHHHCC----C-CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH
T ss_conf 666898860737798875204----7-234665-5542118999999999999999841468863799866774478898
Q ss_pred HHH
Q ss_conf 999
Q gi|254780457|r 204 KVA 206 (217)
Q Consensus 204 ~~i 206 (217)
+.|
T Consensus 209 ~~I 211 (211)
T TIGR00041 209 QDI 211 (211)
T ss_pred HHC
T ss_conf 609
No 129
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=97.16 E-value=0.00028 Score=46.43 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=26.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 189866687789678999999981783562
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
-|.=|-||+||||||+-|.|||.||+.|..
T Consensus 119 s~LLi~GPsGCgKsT~~k~LsKelg~~~~e 148 (670)
T TIGR00602 119 SILLITGPSGCGKSTTIKILSKELGIKVQE 148 (670)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 378841755884478999998886445655
No 130
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=97.15 E-value=0.00032 Score=46.09 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=24.1
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 6668778967899999998178356202
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.-||+|+||||+|+.||+.++..+.-+.
T Consensus 55 f~GPPG~GKTTlAriiAk~~~~~~~~~s 82 (234)
T pfam05496 55 LYGPPGLGKTTLANIIANEMGVNIRITS 82 (234)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 8789999888999999984087537614
No 131
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.14 E-value=0.00048 Score=45.08 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=25.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=.+||=||+||||||+.++|..-|.. ++|.
T Consensus 367 Ge~vaIVG~SGsGKSTL~~LL~rly~p---~~G~ 397 (593)
T PRK10790 367 RNFVALVGHTGSGKSTLASLLMGYYPL---TEGE 397 (593)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC---CCCC
T ss_conf 978998799988689999999985567---8994
No 132
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.13 E-value=0.00049 Score=45.05 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 818986668778967899999998178
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
.=.+||=||+||||||+.+.|..-|.-
T Consensus 341 Ge~vaIVG~SGsGKSTLl~LL~g~y~p 367 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDV 367 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 978998799999879999999977642
No 133
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.13 E-value=0.0068 Score=38.20 Aligned_cols=122 Identities=18% Similarity=0.295 Sum_probs=66.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH---CCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 588189866687789678999999981---78356202899999852321011101465533332101112444444320
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEY---GFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSS 82 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l---~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~ 82 (217)
.++-.|=+-|++||||||+++.+...+ |+..+|+-. ||..-... ..+.-. +
T Consensus 10 ~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~-~r~~~P~y-----------------~~l~~~--~------ 63 (191)
T pfam06414 10 ERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDE-LRTYHPDY-----------------DELQKA--D------ 63 (191)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHH-HHHHHHHH-----------------HHHHHC--C------
T ss_conf 698799995799888899999998753789938971358-78877747-----------------865540--7------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHHHH--H---HCCCCEE---EEEECCHHH---HHHHHH
Q ss_conf 12100111122057899998878888763038846206--412556--6---3038868---998448888---999986
Q gi|254780457|r 83 NAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTI--I---FPDARIK---FYVTASLDI---RARRRY 149 (217)
Q Consensus 83 ~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDigTv--V---fPdA~~K---ifL~As~e~---RA~RR~ 149 (217)
...+|.. ..+..+.+....+....++..++|+|| |+-... . |-++.+. +|+.+++++ |..-||
T Consensus 64 ---~~~~~~~-~~~~a~~~~~~~~~~a~~~r~n~iiegT~~~~~~~~~~~~~lk~~GY~v~v~~Va~~~e~S~~r~~~Ry 139 (191)
T pfam06414 64 ---PKDASEL-TQPDASRWVEKLIDYAIERGYNIILEGTLRSPDVARKLARKLKAAGYEVEVYVVAVPPELSWLGVLDRY 139 (191)
T ss_pred ---HHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHH
T ss_conf ---6778999-899999999999999997599989857778979999999999978997999999889999999999999
Q ss_pred HHHHHHHC
Q ss_conf 67765211
Q gi|254780457|r 150 NEMVSRGE 157 (217)
Q Consensus 150 ~el~~~g~ 157 (217)
.+-...|.
T Consensus 140 ~~~~~~gR 147 (191)
T pfam06414 140 EEELAAGR 147 (191)
T ss_pred HHHHCCCC
T ss_conf 85105787
No 134
>KOG3078 consensus
Probab=97.11 E-value=0.00035 Score=45.91 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=36.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHH
Q ss_conf 8818986668778967899999998178356202899999
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAV 46 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~ 46 (217)
+.+...+-||+||||+|.|..+++.|+..|+.||.|-|+.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ 53 (235)
T KOG3078 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDE 53 (235)
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 4647999718999977437799984477500347889999
No 135
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0048 Score=39.10 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=34.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEE--ECCHHHHHHH
Q ss_conf 8818986668778967899999998178356--2028999998
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYL--DTGLIYRAVA 47 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~l--dtG~~YR~~a 47 (217)
++-+|.|=||.|||||-+|-.||+++|..-+ ||=.+||.+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~md 44 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLD 44 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHCCCCC
T ss_conf 9637999898875778999999998299289302355318886
No 136
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=97.05 E-value=0.00066 Score=44.24 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=29.0
Q ss_pred CCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 55881-8986668778967899999998178356
Q gi|254780457|r 5 ESQSI-IIAIDGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 5 ~~k~~-iIaIDGpagsGKsT~ak~lA~~l~~~~l 37 (217)
+.+.- |++.=||+|+||||+|+-||+-||=.|+
T Consensus 446 ~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRkFv 479 (941)
T TIGR00763 446 KMKGPQILCLVGPPGVGKTSLGKSIAKALNRKFV 479 (941)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 8888767872072695422278999999688049
No 137
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.05 E-value=0.00063 Score=44.38 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=24.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 88189866687789678999999981783562028
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
+.-.+||=||+||||||++++|.. | +++ +|.
T Consensus 375 ~Ge~vaIVG~SGsGKSTl~~LL~g-~-~p~--~G~ 405 (588)
T PRK11174 375 AGQRVALVGPSGAGKTSLLNALLG-F-LPY--QGS 405 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH-H-CCC--CCE
T ss_conf 997899989998649999999987-2-898--838
No 138
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.04 E-value=0.0004 Score=45.58 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEECCHHHH
Q ss_conf 89866687789678999999981----783562028999
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEY----GFHYLDTGLIYR 44 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l----~~~~ldtG~~YR 44 (217)
.++|=|||||||||++|.|-=-- |---||.=.+++
T Consensus 358 ~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~q 396 (556)
T TIGR01842 358 ALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLKQ 396 (556)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHC
T ss_conf 588874786525889878872101356533640334402
No 139
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=97.03 E-value=0.00058 Score=44.58 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=23.2
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 66687789678999999981783562
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
+-||+|+|||++++.||++++++++.
T Consensus 3 l~GppGtGKT~~a~~la~~~~~~~~~ 28 (131)
T pfam00004 3 LYGPPGTGKTTLAKAVAKELGAPFIE 28 (131)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 78999999999999999997898533
No 140
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.033 Score=34.07 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=94.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 8189866687789678999999981-783562028999998523210111-01465533332101112444444320121
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY-GFHYLDTGLIYRAVAKNILDAGIS-LDDEKMAIKIAQNIVLSNLDKAQLSSNAI 85 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l-~~~~ldtG~~YR~~a~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~lr~~~I 85 (217)
.++++|-|-+|+||||+.+.+.+.+ .+++++.|.+-=-+|. +.+.- .-| ++|..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~---k~glve~rD-------------------~~Rkl-- 59 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAK---KKGLVEHRD-------------------EMRKL-- 59 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCEEEEHHHHHHHHHH---HHCCCCCHH-------------------HHHCC--
T ss_conf 559999757988726699999987752200007699999999---838720289-------------------88529--
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHH----CCCEEEECCCH---------H--HHHH--CCCCEEEEEECCHHHHHHHH
Q ss_conf 001111220578999988788887630----38846206412---------5--5663--03886899844888899998
Q gi|254780457|r 86 ANVASQVASIDSVRDALIDIQRSFAQN----KLGVILDGRDI---------G--TIIF--PDARIKFYVTASLDIRARRR 148 (217)
Q Consensus 86 ~~~~S~iA~~p~VR~~l~~~Qr~~~~~----~~g~V~EGRDi---------g--TvVf--PdA~~KifL~As~e~RA~RR 148 (217)
| ++.-..+|++.++. ...+++|+.-. | ..|+ -+.++=+.|.|++++=+.||
T Consensus 60 ----------p--~e~Q~~lq~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR 127 (189)
T COG2019 60 ----------P--LENQRELQAEAAKRIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERR 127 (189)
T ss_pred ----------C--HHHHHHHHHHHHHHHHHHHCCEEEECCCEECCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf ----------8--8899999999999999742065873241114787667788399997529887999937989999987
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CCCCE--EEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 667765211135699999999985610236757853-79973--99977898989999999999998
Q gi|254780457|r 149 YNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLV-RDKDA--YFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 149 ~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~-~a~DA--i~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
..+......-.+.++ -|.++++||..+--. ..-+| -+|.+-+-.+++..+.|..+|+.
T Consensus 128 ~~D~~r~Rd~es~e~------i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 128 LRDSRRDRDVESVEE------IREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred HCCCCCCCCCCCHHH------HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 226120466210899------9999999999999999970884899747888878889999999851
No 141
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.95 E-value=0.00065 Score=44.27 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 9866687789678999999981783562
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
+-.=||+|+||||+|+.||+..+..|..
T Consensus 55 ~Il~GPPGtGKTTLA~iIA~~t~~~F~~ 82 (726)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTRAHFSS 82 (726)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 7888979999999999998874886799
No 142
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.91 E-value=0.00074 Score=43.96 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 818986668778967899999998178
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
.=.+||=||+||||||++++|+.-|.-
T Consensus 368 G~~vaiVG~SGsGKSTL~~LL~gly~p 394 (581)
T PRK11176 368 GKTVALVGRSGSGKSTIANLLTRFYDI 394 (581)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 944312289998678999999853667
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=96.89 E-value=0.00068 Score=44.19 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=25.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 818986668778967899999998178356
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~l 37 (217)
..=|=.-||||+||||+|..||++++=+-+
T Consensus 21 G~PvHl~GPaG~GKT~LA~hvA~~r~RPV~ 50 (265)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVV 50 (265)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 886674478885568999999973689689
No 144
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=96.87 E-value=0.00039 Score=45.60 Aligned_cols=24 Identities=42% Similarity=0.722 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 687789678999999981783562028
Q gi|254780457|r 15 GTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 15 GpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
|||||||||+=++|| ||.-.|+|.
T Consensus 3 GpSGcGKTTlLrlLA---Gf~~pd~G~ 26 (331)
T TIGR01187 3 GPSGCGKTTLLRLLA---GFEQPDSGS 26 (331)
T ss_pred CCCCCCHHHHHHHHH---CCCCCCCCE
T ss_conf 888874799999983---458777550
No 145
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.00037 Score=45.73 Aligned_cols=32 Identities=41% Similarity=0.533 Sum_probs=26.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=|||||||||+.+.|| |+.-.++|.+
T Consensus 23 ge~~~iiGpSGsGKSTll~~i~---GL~~p~sG~I 54 (214)
T cd03297 23 EEVTGIFGASGAGKSTLLRCIA---GLEKPDGGTI 54 (214)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 9799999999735999999998---4999996499
No 146
>KOG0744 consensus
Probab=96.85 E-value=0.00093 Score=43.35 Aligned_cols=204 Identities=19% Similarity=0.210 Sum_probs=92.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH--------HHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCCCCC
Q ss_conf 1898666877896789999999817835620289--------99998523210111----01465533332101112444
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI--------YRAVAKNILDAGIS----LDDEKMAIKIAQNIVLSNLD 76 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~--------YR~~a~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~ 76 (217)
=+|-.-||+|+||+|++|.||+||.....|+-.. -+-+...+-+.+.. +.....+.+.-.++.+--+|
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEH
T ss_conf 48998579998822799999875146523764440699970467889887121138999999999997178968999807
Q ss_pred CCC-CCCHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCEEE-ECCCHHHH---HHCC-CCEEEEEECCHHHHHHHH-
Q ss_conf 444-320121001-111220578999988788887630388462-06412556---6303-886899844888899998-
Q gi|254780457|r 77 KAQ-LSSNAIANV-ASQVASIDSVRDALIDIQRSFAQNKLGVIL-DGRDIGTI---IFPD-ARIKFYVTASLDIRARRR- 148 (217)
Q Consensus 77 ~~~-lr~~~I~~~-~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~-EGRDigTv---VfPd-A~~KifL~As~e~RA~RR- 148 (217)
+.+ |-...-+.. -++=+---.|=+.|+.+.-. .+..+++++ ---.+.+. -|-| ||.++|+--. ..-|.+-
T Consensus 258 EVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr-lK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~P-t~~ai~~I 335 (423)
T KOG0744 258 EVESLAAARTSASSRNEPSDAIRVVNALLTQLDR-LKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPP-TAEAIYEI 335 (423)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEECCCHHHHHHHHHHHHHHHEEECCCC-CHHHHHHH
T ss_conf 8788899987541379982189999999998998-604797799962626777788861175421103896-39999999
Q ss_pred ----HHHHHHHHCC------------CCHHHH-HHHHHHHHHHC-CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf ----6677652111------------356999-99999985610-23675785379973999778989899999999999
Q gi|254780457|r 149 ----YNEMVSRGEK------------VDYVKI-LEDLRNRDNQD-RNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLI 210 (217)
Q Consensus 149 ----~~el~~~g~~------------~~~~ev-~~~i~~RD~~D-~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I 210 (217)
..||...|-- +.+.+. .+.+.+++-.+ +-|....|-.-.-|-+.++-..++++.++.+..-+
T Consensus 336 lkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~~~~~v~~~~fl~al~ea~ 415 (423)
T KOG0744 336 LKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEYFRTFTVDLSNFLLALLEAA 415 (423)
T ss_pred HHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999863843210000005677676676789999886447762057651588887406778648689999999999
Q ss_pred HHHH
Q ss_conf 9874
Q gi|254780457|r 211 DTKL 214 (217)
Q Consensus 211 ~~kl 214 (217)
++.+
T Consensus 416 ~k~~ 419 (423)
T KOG0744 416 KKLL 419 (423)
T ss_pred HHHH
T ss_conf 9886
No 147
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.83 E-value=0.00087 Score=43.53 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=.+||=||+||||||+.++|+.-|.
T Consensus 367 Ge~vaiVG~SGsGKSTL~~LL~r~yd 392 (575)
T PRK11160 367 GEKVALLGRTGCGKSTLLQLLTRAWD 392 (575)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98899988999759999999862367
No 148
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.82 E-value=0.0013 Score=42.45 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=27.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCC--EEECCHHHHHHH
Q ss_conf 89866687789678999999981---783--562028999998
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEY---GFH--YLDTGLIYRAVA 47 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l---~~~--~ldtG~~YR~~a 47 (217)
-+-+-||+|+||||+|+.||+.+ ++. +++.+.++....
T Consensus 21 ~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~ 63 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV 63 (151)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHH
T ss_conf 0899899998865999999997121379827854777046777
No 149
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0015 Score=42.15 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 88189866687789678999999981783
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFH 35 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~ 35 (217)
-.|.|.|.||+||||||+++++|+.|.-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 54599986799845899999999999855
No 150
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=96.80 E-value=0.00076 Score=43.89 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=25.1
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 6668778967899999998178356202
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.-||=|+||||+||-+||-||+. -.+|
T Consensus 41 F~GpRGtGKTS~ARIfAKaLNC~-~~~~ 67 (363)
T TIGR02397 41 FSGPRGTGKTSIARIFAKALNCQ-GPDG 67 (363)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCC-CCCC
T ss_conf 02859976355899999986588-7877
No 151
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.80 E-value=0.00062 Score=44.43 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 8818986668778967899999998178
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
+.=.+||-||+||||||+.++|..-|..
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 8987888558888578999999861588
No 152
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.80 E-value=0.00089 Score=43.47 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=27.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH
Q ss_conf 818986668778967899999998178356202899
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIY 43 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~Y 43 (217)
.=+++|=||+||||||+.+.|+ |+...++|.++
T Consensus 31 Ge~~~IvG~sGsGKSTLl~~i~---G~~~~~~G~I~ 63 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALL---GELEKLSGSVS 63 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHC---CCCCCCCCCCC
T ss_conf 9899999999985899999981---89525689522
No 153
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.77 E-value=0.00087 Score=43.54 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=23.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 18986668778967899999998178356202
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
=.+||=||+||||||+.++|+.-| --++|
T Consensus 350 e~vaiVG~SGsGKSTL~~LL~r~y---~p~~G 378 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLY---QPQSG 378 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCCCC
T ss_conf 889998999997799999982896---69998
No 154
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=96.75 E-value=0.052 Score=32.92 Aligned_cols=153 Identities=21% Similarity=0.264 Sum_probs=83.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 98666877896789999999817835620289999985232101110146553333210111244444432012100111
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVAS 90 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S 90 (217)
|-+-|.++|||||.|+.|++.|.=. | +. -.-++++.... .++. +.
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l~~~----~-------~~----v~vi~d~~~~~--~~~~-y~----------------- 46 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYLEEK----G-------YD----VIVISDESLGI--ESDD-YK----------------- 46 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC----C-------CE----EEEECCCCCCC--CCCC-CC-----------------
T ss_conf 7985799996889999999999975----9-------93----89978001267--5310-00-----------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC-H---HHHHH------CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 12205789999887888876303884620641-2---55663------03886899844888899998667765211135
Q gi|254780457|r 91 QVASIDSVRDALIDIQRSFAQNKLGVILDGRD-I---GTIIF------PDARIKFYVTASLDIRARRRYNEMVSRGEKVD 160 (217)
Q Consensus 91 ~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRD-i---gTvVf------PdA~~KifL~As~e~RA~RR~~el~~~g~~~~ 160 (217)
.-.....+|..+............-+|+||=- | =.-+| ----+=+|+.|+.+.-.+|- . ++++..-
T Consensus 47 ~s~~Ek~~R~~l~s~v~r~Ls~~~iVIlD~~NYiKG~RYEL~C~Ak~~~t~~c~v~~~~p~e~~~~~N-~---~r~~~~y 122 (266)
T pfam08433 47 DSKKEKFLRGSLRSAVKRDLSKNTIVIVDSLNYIKGFRYELYCIAKEAKTTYCVVYCKAPLDTCLKWN-E---ERGEPSW 122 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH-C---CCCCCCC
T ss_conf 10478999999999998751668889954874045689999999986388848999689989999862-1---4777789
Q ss_pred HHHHHHHHHHHHHH--CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 69999999998561--023675785379973999778989899999999
Q gi|254780457|r 161 YVKILEDLRNRDNQ--DRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAK 207 (217)
Q Consensus 161 ~~ev~~~i~~RD~~--D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~ 207 (217)
-++++.++..|=+. -++|=-+||-.. ..+..+.++++.+.+.
T Consensus 123 ~~e~~~~L~~RfE~P~~~nRWDsPLftv-----~~~~~~p~e~I~~al~ 166 (266)
T pfam08433 123 PDELLDQLYQRFEEPNSKNRWDSPLFTV-----LDDEDLPLDEILKALI 166 (266)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCEEC-----CCCCCCCHHHHHHHHH
T ss_conf 8799999999723899888666883245-----7888888999999997
No 155
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.00056 Score=44.65 Aligned_cols=33 Identities=39% Similarity=0.571 Sum_probs=26.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH
Q ss_conf 818986668778967899999998178356202899
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIY 43 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~Y 43 (217)
.=+++|=|||||||||+-+.|+ |+.-.++|.+|
T Consensus 26 Ge~~~ivGpSG~GKSTllr~i~---Gl~~p~~G~I~ 58 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIA---GLEEPDSGSIL 58 (178)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEEE
T ss_conf 9899999999983999999998---59999963999
No 156
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.74 E-value=0.0012 Score=42.70 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 898666877896789999999817
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.|||=|+|||||||++|+|.--|.
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899987999988999999836788
No 157
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=96.73 E-value=0.00084 Score=43.62 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=25.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+||+=|+|||||||++++|-. |...|+|
T Consensus 388 G~~vALVGRSGSGKsTlv~LlPR---Fy~p~~G 417 (603)
T TIGR02203 388 GETVALVGRSGSGKSTLVNLLPR---FYEPDSG 417 (603)
T ss_pred CCEEEEECCCCCHHHHHHHHCCC---CCCCCCC
T ss_conf 73599870688538999855236---6045888
No 158
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0005 Score=44.95 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=27.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH
Q ss_conf 818986668778967899999998178356202899
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIY 43 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~Y 43 (217)
.=++++=|||||||||+.++|| |+...++|.+|
T Consensus 32 Ge~~~llGpSG~GKTTlLr~ia---Gl~~p~~G~I~ 64 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVA---GLEKPTSGQIF 64 (351)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEEE
T ss_conf 9899999999649999999997---69998836999
No 159
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.72 E-value=0.00062 Score=44.40 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=26.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
+.=+++|=|||||||||+-+.++ |+.--++|.+
T Consensus 23 ~Ge~~~i~GpSGsGKSTLL~~i~---gl~~p~sG~i 55 (206)
T TIGR03608 23 KGKMVAIVGESGSGKSTLLNIIG---LLEKPDSGQV 55 (206)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCCCCCEEE
T ss_conf 99899998799970999999997---5999897599
No 160
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0013 Score=42.59 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=25.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.||. =||+|+||||+|+.||...+..|.---
T Consensus 50 SmIl--~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 50 SMIL--WGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred EEEE--ECCCCCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 0577--789998888999999876177669951
No 161
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.70 E-value=0.0018 Score=41.65 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 881898666877896789999999817
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
+. ++||=||+||||||+.+.|+--+|
T Consensus 22 ~G-itaIvGpsGsGKSTLl~~i~~~lg 47 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98-289999999988999999998747
No 162
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.70 E-value=0.0012 Score=42.68 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=23.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=-|+|-|||||||||+-|.+|.- .-.++|-
T Consensus 29 Ge~iaitGPSG~GKStllk~va~L---isp~~G~ 59 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASL---ISPTSGT 59 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC---CCCCCCE
T ss_conf 854887678876688999999813---6998852
No 163
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.69 E-value=0.0015 Score=42.15 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=.|||=||+||||||+.++|..-|.
T Consensus 361 Ge~vaiVG~SGsGKSTL~~LL~gly~ 386 (585)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLHRVFD 386 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 98899988989869999999860157
No 164
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.68 E-value=0.0015 Score=42.12 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 8986668778967899999998178
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
+|.|-|||||||+|+.+.|.+++..
T Consensus 1 livi~GPSG~GK~tl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999988999999999851987
No 165
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.68 E-value=0.0015 Score=42.09 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=25.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
Q ss_conf 98666877896789999999817835620
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDT 39 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldt 39 (217)
|=.-||+|+|||.+||.+|..++++|+.-
T Consensus 169 vLLyGPPGtGKTllAkAvA~e~~~~fi~v 197 (390)
T PRK03992 169 VLLYGPPGTGKTLLAKAVAHETNATFIRV 197 (390)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 78689899978999999998748887996
No 166
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=96.68 E-value=0.0012 Score=42.75 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=44.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHCCCCCCC--CCCCCCHHHHC
Q ss_conf 9866687789678999999981783562028999998523210111014-65533332101112444--44432012100
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDD-EKMAIKIAQNIVLSNLD--KAQLSSNAIAN 87 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~--~~~lr~~~I~~ 87 (217)
|-.=||.|||||=+|+-||++|+.+|==+ =|.| +.+.|.--+| |+++.++.+.-.++-.. .--++-+||++
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L~VPfAiA----DATt--LTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDK 228 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARILNVPFAIA----DATT--LTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDK 228 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEC----CHHH--HHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCC
T ss_conf 24546888526899999998738874211----1110--20066424228899999987414552452785089842231
Q ss_pred CC
Q ss_conf 11
Q gi|254780457|r 88 VA 89 (217)
Q Consensus 88 ~~ 89 (217)
.+
T Consensus 229 Ia 230 (452)
T TIGR00382 229 IA 230 (452)
T ss_pred HH
T ss_conf 01
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.67 E-value=0.0015 Score=42.08 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 818986668778967899999998
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALE 31 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~ 31 (217)
.=++||=||+||||||+.+.|+--
T Consensus 35 Ge~vaiiG~sGsGKSTLl~ll~Gl 58 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999999999799999999649
No 168
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=96.66 E-value=0.0018 Score=41.63 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=32.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE-ECCHHHHHHH
Q ss_conf 8986668778967899999998178356-2028999998
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYL-DTGLIYRAVA 47 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~l-dtG~~YR~~a 47 (217)
++||=||..|||||++++||..|+-++. .-|.+|+-.-
T Consensus 177 ~V~ilG~eStGKstLv~~lA~~~nt~~~~Eyar~y~e~~ 215 (346)
T TIGR01526 177 TVAILGGESTGKSTLVNKLAEKLNTTSAWEYAREYVEAK 215 (346)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 888855888636899999999846887125655666651
No 169
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.66 E-value=0.00082 Score=43.70 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=23.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+++|=||+||||||+.+.|+--+ --++|
T Consensus 33 Ge~~~i~G~sGsGKSTLlk~i~gl~---~p~~G 62 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLI---SPTSG 62 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCCCC
T ss_conf 9699999999999999999996466---88876
No 170
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.65 E-value=0.0016 Score=41.98 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=25.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+ ++..-++|.+
T Consensus 27 Ge~~aliG~sGsGKSTLl~~l~---gl~~p~~G~i 58 (248)
T PRK11264 27 GEVVAIIGPSGSGKTTLLRCIN---LLEQPEAGTI 58 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCCCCEE
T ss_conf 9899999999980999999997---5899998679
No 171
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.61 E-value=0.0018 Score=41.60 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=25.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=.+||=||+||||||+.+.|+ |+.-.++|.+
T Consensus 63 Ge~vaIVG~sGSGKSTLl~lL~---gl~~p~~G~I 94 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLIL---GELEPSEGKI 94 (282)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCCEE
T ss_conf 9999999999981999999995---7872786589
No 172
>PHA02244 ATPase-like protein
Probab=96.61 E-value=0.0016 Score=41.98 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=38.2
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHH
Q ss_conf 65558818986668778967899999998178356202899999852
Q gi|254780457|r 3 RLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKN 49 (217)
Q Consensus 3 ~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~ 49 (217)
++-+.++-+-.-|||||||+++|+.+|+-|.++|.=||++--.+.+.
T Consensus 114 ~~v~~nipV~L~G~AGsGKt~~A~qIA~aLdl~FYf~gAI~~ef~L~ 160 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELK 160 (383)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHCC
T ss_conf 98735985699758888634899999998588824413230134301
No 173
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.60 E-value=0.02 Score=35.45 Aligned_cols=131 Identities=25% Similarity=0.286 Sum_probs=72.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
-.|.|.|+.|||||-+=+.|+.. |.+-||== -++-..|-.+... .. .++
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~-G~qviDLE-------glAnHRGS~FG~~----------~~----~~Q--------- 176 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA-GAQVLDLE-------GLANHRGSSFGAL----------GL----GPQ--------- 176 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CCCCCCHH-------HHHHCCCCCCCCC----------CC----CCC---------
T ss_conf 76998788887789999999976-99742589-------9863146534688----------88----999---------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE--CCCHHHHHHCCC-------CEEEEEECCHHHHHHHHHHHHHHHHCC-
Q ss_conf 1112205789999887888876303884620--641255663038-------868998448888999986677652111-
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILD--GRDIGTIIFPDA-------RIKFYVTASLDIRARRRYNEMVSRGEK- 158 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E--GRDigTvVfPdA-------~~KifL~As~e~RA~RR~~el~~~g~~- 158 (217)
-+ -...-+.|....+.+ ...+.+++| +|-||.+..|++ --.+++.|+++.|++|=..+.......
T Consensus 177 ---Ps-Qk~FEn~l~~~l~~~-~~~~~i~vE~ES~~IG~~~iP~~l~~~M~~a~~i~i~~~le~Rv~~l~~~Y~~~~~~~ 251 (311)
T TIGR03167 177 ---PS-QKRFENALAEALRRL-DPGRPIFVEDESRRIGRVALPDALFEAMRAAPLVELEASLEERVERLVEEYAGFEEDP 251 (311)
T ss_pred ---CC-HHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf ---78-999999999999817-8889569960331305713899999998519989998999999999999863043369
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 35699999999985610
Q gi|254780457|r 159 VDYVKILEDLRNRDNQD 175 (217)
Q Consensus 159 ~~~~ev~~~i~~RD~~D 175 (217)
..+.+.+.-|..|=-.+
T Consensus 252 ~~l~~~l~~i~krlG~~ 268 (311)
T TIGR03167 252 EFLAAALERIRKRLGGE 268 (311)
T ss_pred HHHHHHHHHHHHHCCHH
T ss_conf 99999999999864999
No 174
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.00083 Score=43.66 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=23.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 1898666877896789999999817835620289
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
=+++|=|+|||||||+++.|+ |+.--++|.+
T Consensus 39 E~l~ivGeSGsGKSTL~r~i~---gl~~p~sG~I 69 (266)
T PRK10419 39 ETVALLGRSGCGKSTLARLLV---GLESPSQGNI 69 (266)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 899999999977999999996---6999996299
No 175
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0018 Score=41.68 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=22.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 18986668778967899999998178356202
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
=+.+|=|+|||||||+++.||- |.--++|
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G---l~~p~~G 62 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG---LEKPSSG 62 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHC---CCCCCCC
T ss_conf 7899984898988899999956---5678886
No 176
>COG0645 Predicted kinase [General function prediction only]
Probab=96.58 E-value=0.068 Score=32.21 Aligned_cols=108 Identities=21% Similarity=0.275 Sum_probs=67.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
Q ss_conf 89866687789678999999981783562028999998523210111014655333321011124444443201210011
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVA 89 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~ 89 (217)
.+-+-|-+||||||+|+.|++.|+...|.|-..=..+. .+.........+++++.+..
T Consensus 3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~---------------------g~p~~~r~~~g~ys~~~~~~- 60 (170)
T COG0645 3 LVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLF---------------------GVPEETRGPAGLYSPAATAA- 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHC---------------------CCCCCCCCCCCCCCHHHHHH-
T ss_conf 79972588865868878988534866874178998723---------------------88610148878876788999-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC-------CCHHHHHHCCCCEE---EEEECCHHHHHHH
Q ss_conf 1122057899998878888763038846206-------41255663038868---9984488889999
Q gi|254780457|r 90 SQVASIDSVRDALIDIQRSFAQNKLGVILDG-------RDIGTIIFPDARIK---FYVTASLDIRARR 147 (217)
Q Consensus 90 S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG-------RDigTvVfPdA~~K---ifL~As~e~RA~R 147 (217)
|...|...=..+.....++|+|+ |...-+++-+-.+- |.+.|..++...|
T Consensus 61 --------vy~~l~~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~r 120 (170)
T COG0645 61 --------VYDELLGRAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGR 120 (170)
T ss_pred --------HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
T ss_conf --------999999889999967991898443378888999999875038854888758829999989
No 177
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0009 Score=43.44 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 189866687789678999999981
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
=.++|=||+||||||+.+.|..-|
T Consensus 28 e~v~ivG~sGsGKSTLl~ll~gl~ 51 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999999999998999999974385
No 178
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.58 E-value=0.002 Score=41.33 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=24.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 88189866687789678999999981783562028
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
+.-.+||=||+||||||+.+.|+--+ --++|.
T Consensus 27 ~G~~vaIvG~sGsGKSTLl~ll~gl~---~p~~G~ 58 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL---RPTSGR 58 (173)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC---CCCCCE
T ss_conf 99999999999980999999996666---679998
No 179
>KOG1970 consensus
Probab=96.58 E-value=0.0026 Score=40.69 Aligned_cols=29 Identities=21% Similarity=0.595 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 89866687789678999999981783562
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
|.-|-||||+||||+-+.||+.||+.+..
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCEEEE
T ss_conf 79985798887131999999864802123
No 180
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.00082 Score=43.69 Aligned_cols=32 Identities=41% Similarity=0.498 Sum_probs=25.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|| |+.--++|.+
T Consensus 25 Ge~~~iiGpSGsGKSTLlr~i~---Gl~~p~~G~I 56 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIA---GFIKPDSGKI 56 (235)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 9899999999635999999997---4999996599
No 181
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=96.58 E-value=0.0048 Score=39.10 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE-CCHHH
Q ss_conf 89866687789678999999981783562-02899
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD-TGLIY 43 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld-tG~~Y 43 (217)
.|+|=||..|||||+++.||.+||-.|.. -|.-|
T Consensus 233 kVvIlG~ESTGKTTL~~~LA~~ynT~~v~EYgReY 267 (411)
T PRK08099 233 TVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDY 267 (411)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 89998999888899999999997899518989999
No 182
>KOG4203 consensus
Probab=96.55 E-value=0.0063 Score=38.40 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=94.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC---------CC-EEECCHHHHHHHHHHHH----CCCCHHH-----HHHHHHH
Q ss_conf 5881898666877896789999999817---------83-56202899999852321----0111014-----6553333
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYG---------FH-YLDTGLIYRAVAKNILD----AGISLDD-----EKMAIKI 66 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~---------~~-~ldtG~~YR~~a~~~~~----~~~~~~~-----~~~~~~~ 66 (217)
..+++|.+-|.++|||+|++.++-.-++ +. .++.=.+|+.++..-+. +...++. .......
T Consensus 42 ~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~~ 121 (473)
T KOG4203 42 KEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYLT 121 (473)
T ss_pred CCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 66379884057556754416889977655411268872799612778876162878886642324458787664569999
Q ss_pred HHH-CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHHHHHHCCCCEEEEEECCHHH
Q ss_conf 210-111244444432012100111122057899998878888763038846206--41255663038868998448888
Q gi|254780457|r 67 AQN-IVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTIIFPDARIKFYVTASLDI 143 (217)
Q Consensus 67 ~~~-i~~~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDigTvVfPdA~~KifL~As~e~ 143 (217)
.++ ..+...+..-+..-..++..+. -.+....+-+++|| |=--..+--=-+.|+|++.+.+.
T Consensus 122 ~~~~~kg~~v~ip~y~~~~~~~~~~~---------------~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~ 186 (473)
T KOG4203 122 LKNLKKGKAVEIPVYDFVTHSRDEEK---------------TIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADV 186 (473)
T ss_pred HHCCCCCCEEECCEEEEECCCCCCCC---------------EEEECCCCCEEEHHHHHHHHHHHHHHHCCEEEEECCCCH
T ss_conf 85156562540202431124677874---------------078538985552017777679999873342798358642
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 9999866776521113569999999998561023675785379973999
Q gi|254780457|r 144 RARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFF 192 (217)
Q Consensus 144 RA~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~I 192 (217)
|-.||..--.. ....+++.++.++.+|..-|..-.+.|+++--|.++=
T Consensus 187 rla~ri~r~~~-~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~ 234 (473)
T KOG4203 187 RLARRILRDIV-ERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIP 234 (473)
T ss_pred HHHHHHHCCHH-HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEE
T ss_conf 46898725546-5332477888998731486088886378873122022
No 183
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.55 E-value=0.0019 Score=41.57 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=23.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+++|=||+||||||+.+.++- +.--++|
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~G---l~~p~~G 60 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILG---LLKPTSG 60 (228)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCC
T ss_conf 98999999999869999999972---8987886
No 184
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0019 Score=41.46 Aligned_cols=30 Identities=37% Similarity=0.618 Sum_probs=24.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+++|=|||||||||+.+.|+ |+.-.++|
T Consensus 28 Ge~~~iiGpSGsGKSTll~~i~---Gl~~p~~G 57 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIA---GLERPDSG 57 (239)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCE
T ss_conf 9899999999977999999997---69999863
No 185
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.51 E-value=0.0012 Score=42.65 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=.|||=||+||||||+.+.|..-+
T Consensus 29 G~~iaIvG~sGsGKSTLl~ll~gl~ 53 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999999998999999982386
No 186
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.49 E-value=0.0021 Score=41.20 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1898666877896789999999817
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
=++||=||+||||||+.+.|+.-+.
T Consensus 41 e~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9999999999849999999964546
No 187
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.49 E-value=0.0021 Score=41.22 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHC-CCEEEECCCHHHHHHCCCCEEEEEE-------CCHHHHHHHHHHHHHHHHCCC-CHHH
Q ss_conf 205789999887888876303-8846206412556630388689984-------488889999866776521113-5699
Q gi|254780457|r 93 ASIDSVRDALIDIQRSFAQNK-LGVILDGRDIGTIIFPDARIKFYVT-------ASLDIRARRRYNEMVSRGEKV-DYVK 163 (217)
Q Consensus 93 A~~p~VR~~l~~~Qr~~~~~~-~g~V~EGRDigTvVfPdA~~KifL~-------As~e~RA~RR~~el~~~g~~~-~~~e 163 (217)
+-.|..+..+.+..+++.+.. -.+|+=-.|+..+. +||-=++|. .++++= ...-..+.+.|-.. ..-+
T Consensus 170 ~LD~~~~~~i~~~l~~L~~~~g~TvI~itHdl~~~~--~aDRiivm~~G~Iv~~Gtp~el-f~~~~~l~~~~l~~P~~~~ 246 (279)
T PRK13635 170 MLDPQGRREVLETVRQLKEQKGITVLSITHDLDEAA--QADRVIVMNKGEILEEGTPEEI-FKSGHMLQEIGLDVPFSVK 246 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHH--CCCEEEEEECCEEEEECCHHHH-HCCHHHHHHCCCCCCHHHH
T ss_conf 489899999999999999837989999976789996--3998999989999998699999-7798899977999994999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999856102367578537997399977898989999999999998
Q gi|254780457|r 164 ILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 164 v~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
+..+|.++ -+.++.+.+|++|.++.+.++-.+
T Consensus 247 l~~~l~~~-----------------g~~~~~~~~t~~~~~~~l~~~~~~ 278 (279)
T PRK13635 247 LKELLKRN-----------------GILLPNTHLTMESLVDELWTLHSK 278 (279)
T ss_pred HHHHHHHC-----------------CCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999975-----------------999998888999999999987438
No 188
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.49 E-value=0.0013 Score=42.40 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=26.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
+.=+++|=||+||||||+.+.|+ |+...++|.+
T Consensus 26 ~Ge~~~liG~nGsGKSTll~~i~---Gl~~~~~G~i 58 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCIN---KLEEITSGDL 58 (240)
T ss_pred CCCEEEEECCCCCHHHHHHHHHH---CCCCCCCCEE
T ss_conf 99899999999980999999996---3899999748
No 189
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0011 Score=42.84 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=.|+|=||+||||||+.+.|..-|
T Consensus 28 Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999899982999999996676
No 190
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0026 Score=40.74 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=26.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 189866687789678999999981783562028
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
=.+|+=|||||||||+-++|| ||...++|.
T Consensus 32 ef~tlLGPSGcGKTTlLR~IA---Gfe~p~~G~ 61 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIA---GFEQPSSGE 61 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCCCE
T ss_conf 689998998888899999996---777888865
No 191
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.46 E-value=0.0042 Score=39.43 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 558818986668778967899999998178356
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~l 37 (217)
..|.-|+..=||+|+||||++|-+|+-||-+|.
T Consensus 346 ~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~ 378 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 677877996469987724699999998589869
No 192
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=96.46 E-value=0.0023 Score=41.05 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=23.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 18986668778967899999998178356202
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
=++||.||||+||||+=+.| |||---+.|
T Consensus 379 ~~vAl~G~SGaGKSTLL~lL---LGf~~P~~G 407 (570)
T TIGR02857 379 ERVALVGPSGAGKSTLLNLL---LGFVEPTEG 407 (570)
T ss_pred CEEEEEECCCCCHHHHHHHH---HCCCCCCCC
T ss_conf 04888627999788999999---715764464
No 193
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.45 E-value=0.002 Score=41.40 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=.|||=||+||||||+.|.|+--|.
T Consensus 491 Ge~vaIvG~sGsGKSTL~kll~Gl~~ 516 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCC
T ss_conf 97899980589878899998556758
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.44 E-value=0.0032 Score=40.12 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=24.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 1898666877896789999999817835
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
-.+.|-||+||||||+++.+|..+...+
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 7899999997029999999998726689
No 195
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=96.40 E-value=0.0022 Score=41.18 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 8986668778967899999998178356202
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
-+++-|||||||||+=|.|=--| ..|+|
T Consensus 36 cv~L~G~SGaGKSTlLk~lYaNY---lp~~G 63 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANY---LPDSG 63 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC---CCCCC
T ss_conf 58853688876789999766304---74686
No 196
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.40 E-value=0.0027 Score=40.59 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=25.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+ |+..-++|.+
T Consensus 35 GE~v~iiG~sGsGKSTLl~~i~---Gl~~p~~G~I 66 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLG---GLDTPTSGDV 66 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCCCEEE
T ss_conf 9899999999940999999996---6999986399
No 197
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0025 Score=40.83 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=24.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=|||||||||+.+.||- +...++|.+
T Consensus 50 GE~~~ivG~SGsGKSTLLr~i~G---L~~p~~G~I 81 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINR---LIEPTSGKV 81 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCEEE
T ss_conf 99999998998489999999975---999997599
No 198
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.38 E-value=0.0027 Score=40.56 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=24.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=|||||||||+-+.|+ |+.--++|.
T Consensus 26 Ge~~~ivGpSGsGKSTLL~~i~---gL~~p~~G~ 56 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCIN---LLEEPDSGT 56 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEE
T ss_conf 9899999999844999999998---199998649
No 199
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0015 Score=42.17 Aligned_cols=31 Identities=39% Similarity=0.560 Sum_probs=24.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=|||||||||+.+.++ |+.--++|.
T Consensus 26 Ge~~~iiG~SGsGKSTll~~i~---gL~~p~~G~ 56 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIV---GLLRPDSGE 56 (235)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCCE
T ss_conf 9899999999972999999997---599989858
No 200
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.36 E-value=0.0033 Score=40.06 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=27.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE--EECCHHHH
Q ss_conf 98666877896789999999817835--62028999
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHY--LDTGLIYR 44 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~--ldtG~~YR 44 (217)
|-+=||+|+|||-+||.+|...++++ +|.|.+|-
T Consensus 262 vLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~ 297 (491)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFG 297 (491)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHH
T ss_conf 999799998789999999866389469966799756
No 201
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.35 E-value=0.0029 Score=40.42 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=24.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=|||||||||+.+.++ |+..-++|.
T Consensus 27 Ge~v~i~GpSGsGKSTLl~~i~---gl~~p~sG~ 57 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIY---KEELPTSGT 57 (214)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEE
T ss_conf 9899999799953999999996---298988649
No 202
>CHL00181 cbbX CbbX; Provisional
Probab=96.34 E-value=0.0044 Score=39.30 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=27.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-CCCEEECCHH
Q ss_conf 8189866687789678999999981-7835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY-GFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l-~~~~ldtG~~ 42 (217)
.+-...-||+|+||||+|+.+|+-| .+.+|++|-+
T Consensus 59 s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~v 94 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHL 94 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 653888789986799999999999998699558958
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.33 E-value=0.0029 Score=40.37 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 818986668778967899999998
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALE 31 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~ 31 (217)
.=+++|=|||||||||+.+.|+--
T Consensus 50 GEi~~lvGpSGsGKSTLLr~i~GL 73 (382)
T TIGR03415 50 GEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999973499999999759
No 204
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.33 E-value=0.003 Score=40.34 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=22.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 866687789678999999981783562
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
=+-||+|+||+|+|+.+|+.|+....+
T Consensus 40 Lf~GPpG~GKTt~A~~lA~~l~~~~~~ 66 (337)
T PRK12402 40 VVYGPSGSGKTAAVRALARELYGDPWE 66 (337)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 888929848999999999996799756
No 205
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=96.32 E-value=0.0032 Score=40.12 Aligned_cols=127 Identities=18% Similarity=0.208 Sum_probs=62.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC----CEEE--------CCHHHHHHHHHHHH-------------CCCCHHH-HHH
Q ss_conf 18986668778967899999998178----3562--------02899999852321-------------0111014-655
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGF----HYLD--------TGLIYRAVAKNILD-------------AGISLDD-EKM 62 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~----~~ld--------tG~~YR~~a~~~~~-------------~~~~~~~-~~~ 62 (217)
=++|+=||+||||||++-+|-.-|.= -.|| --.+-|-++.-.-| .|.+..+ .+.
T Consensus 560 ~vvALVGPsGsGKStvaaLL~n~Y~Pt~G~vLlDg~Pl~~y~H~YLH~~V~~VgQEPvLf~gSvr~NIaYGL~~~~T~~~ 639 (770)
T TIGR00958 560 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLSQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTKTPTDEE 639 (770)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHCCEECCCEEEEEECCCEECCCCHHHHHHHCCCCCCCHHH
T ss_conf 25998658998399999999855789865687768461332650100025433205430246316656516899982789
Q ss_pred HHHHHHH---CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEEC
Q ss_conf 3333210---1112444444320121001111220578999988788887630388462064125566303886899844
Q gi|254780457|r 63 AIKIAQN---IVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTA 139 (217)
Q Consensus 63 ~~~~~~~---i~~~~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~A 139 (217)
+...++. .+|=... ++=++.+|+..=+.+|.=..-|=++ =|.++++|.=+|+| |-+| | |||
T Consensus 640 ~~aaA~~a~ahdFI~~~-~~gydT~vGE~G~qlSgGQKQRiAi---ARALvR~P~vLILD--EATS-----A-----LDa 703 (770)
T TIGR00958 640 VTAAAKAANAHDFISEL-PNGYDTEVGEKGSQLSGGQKQRIAI---ARALVRKPRVLILD--EATS-----A-----LDA 703 (770)
T ss_pred HHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHH---HHHHHHCCEEEEEC--CHHH-----H-----HCC
T ss_conf 99999861376443578-8986754089787523038999999---98875189057400--0110-----2-----136
Q ss_pred CHHHHHHHHHHH
Q ss_conf 888899998667
Q gi|254780457|r 140 SLDIRARRRYNE 151 (217)
Q Consensus 140 s~e~RA~RR~~e 151 (217)
.-+-+.++=..|
T Consensus 704 ~~~~~~e~~lq~ 715 (770)
T TIGR00958 704 ESQLEVEQLLQE 715 (770)
T ss_pred CCHHHHHHHHHH
T ss_conf 654789999999
No 206
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.31 E-value=0.0033 Score=40.05 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 818986668778967899999998178
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
.=+++|=|||||||||+.+.|+--+..
T Consensus 26 Ge~~~iiG~SGsGKSTll~~i~gL~~~ 52 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLNDL 52 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 989999999998199999999744502
No 207
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0031 Score=40.28 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHCCCCEEEEE-------ECCHHHHHHHHHHHHHHHHCCC-CHHHH
Q ss_conf 0578999988788887630-3884620641255663038868998-------4488889999866776521113-56999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQN-KLGVILDGRDIGTIIFPDARIKFYV-------TASLDIRARRRYNEMVSRGEKV-DYVKI 164 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvVfPdA~~KifL-------~As~e~RA~RR~~el~~~g~~~-~~~ev 164 (217)
-.|..|..+.+..+++.+. ...+|+=-.|+..+ .-||-=+.| +.++++ ..-|-..+.+.|-.. .+..+
T Consensus 168 LD~~~~~~i~~~l~~l~~~~g~Tvi~iTHdl~~v--~~aDrvivm~~G~Iv~~Gtp~e-vf~~p~~l~~~~l~~P~~~~~ 244 (276)
T PRK13650 168 LDPEGRLELIKTIKNIRDDYQLTVISITHDLDEV--ALSDRVLVMKDGQVESTSTPRE-LFSRGDELLQLGLDIPFTTSL 244 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHH--HCCCEEEEEECCEEEEECCHHH-HHCCHHHHHHCCCCCCHHHHH
T ss_conf 8999999999999999984298999995778999--6099999998999999768999-974989999779999869999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999856102367578537997399977898989999999999998
Q gi|254780457|r 165 LEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 165 ~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
...+..+ -+-+|-..++++|.++.+++++.+
T Consensus 245 ~~~L~~~-----------------g~~~~~~~~t~~e~~~~l~~~~~~ 275 (276)
T PRK13650 245 VQMLQEE-----------------GYDLDYGYLTEKELEEQLWELISK 275 (276)
T ss_pred HHHHHHC-----------------CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999965-----------------999998887999999999999705
No 208
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0032 Score=40.14 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHCCCCEEEE-------EECCHHHHHHHHHHHHHHHHCCC-CHHHH
Q ss_conf 0578999988788887630-388462064125566303886899-------84488889999866776521113-56999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQN-KLGVILDGRDIGTIIFPDARIKFY-------VTASLDIRARRRYNEMVSRGEKV-DYVKI 164 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvVfPdA~~Kif-------L~As~e~RA~RR~~el~~~g~~~-~~~ev 164 (217)
-.|..|..+.+..+++.++ ...+|+=-.|+..+ .. ||-=++ ...+++. ...+-..|.+.|-.. ..-++
T Consensus 176 LDp~~~~~i~~~l~~l~~e~g~Tii~vTHdl~~~-~~-aDrv~vm~~G~Iv~~G~p~e-vf~~~~~L~~~~l~~P~~~~l 252 (281)
T PRK13633 176 LDPSGRREVVNTIKELNKKYGITIILITHYMEEA-VE-ADRIIVMDKGKVVMEGTPKE-IFKEVEMMKKIGLDVPQVTEL 252 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HC-CCEEEEEECCEEEEECCHHH-HHCCHHHHHHCCCCCCCHHHH
T ss_conf 8989999999999999984098999986788999-73-99899998999999779999-976988999779999919999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999999856102367578537997399977898989999999999
Q gi|254780457|r 165 LEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGL 209 (217)
Q Consensus 165 ~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~ 209 (217)
..+|..+ + +-++..-+|++|.++.++++
T Consensus 253 ~~~L~~~----------------g-~~~~~~~~t~~e~~~~l~~~ 280 (281)
T PRK13633 253 AYELRKE----------------G-VDIPSDILTIDEMVNELCQL 280 (281)
T ss_pred HHHHHHC----------------C-CCCCCCCCCHHHHHHHHHHC
T ss_conf 9999974----------------9-99998877999999999863
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.30 E-value=0.0024 Score=40.88 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 668778967899999998178356
Q gi|254780457|r 14 DGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 14 DGpagsGKsT~ak~lA~~l~~~~l 37 (217)
-||.|+|||=+||.||+.||..++
T Consensus 533 ~GPTGVGKTElak~LA~~LGv~l~ 556 (774)
T TIGR02639 533 VGPTGVGKTELAKQLAEELGVHLL 556 (774)
T ss_pred ECCCCCCHHHHHHHHHHHHCCHHC
T ss_conf 479896257889999997082001
No 210
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0031 Score=40.21 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+++|=|||||||||+.+.|+--+
T Consensus 54 GEi~~ivG~SGsGKSTLlr~i~gL~ 78 (400)
T PRK10070 54 GEIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999999846999999997599
No 211
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.30 E-value=0.0035 Score=39.95 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=24.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||+||||||+.+.|+ |+..-++|.
T Consensus 31 Gei~~iiG~sGsGKSTLl~~i~---gl~~p~~G~ 61 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCIN---FLEKPSEGS 61 (257)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCCE
T ss_conf 9799999899981999999996---599999818
No 212
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.29 E-value=0.046 Score=33.26 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=66.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
Q ss_conf 89866687789678999999981783562028999998523210111014655333321011124444443201210011
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVA 89 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~ 89 (217)
.|.|.|+.|||||-+=+.|+. .|.+-||== -++-..|-.+.. .... .|
T Consensus 139 ~~vl~G~TG~GKT~lL~~L~~-~G~~viDLE-------glA~HRGS~FG~---------------~~~~---QP------ 186 (333)
T PRK11784 139 LVVLGGMTGSGKTRLLQALAN-AGAQVLDLE-------GLANHRGSSFGR---------------LGGP---QP------ 186 (333)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEECHH-------HHHHCCCCCCCC---------------CCCC---CC------
T ss_conf 599867888778999999997-599743389-------886325642358---------------8999---98------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEE--CCCHHHHHHCCC-------CEEEEEECCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 112205789999887888876303884620--641255663038-------86899844888899998667765211135
Q gi|254780457|r 90 SQVASIDSVRDALIDIQRSFAQNKLGVILD--GRDIGTIIFPDA-------RIKFYVTASLDIRARRRYNEMVSRGEKVD 160 (217)
Q Consensus 90 S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E--GRDigTvVfPdA-------~~KifL~As~e~RA~RR~~el~~~g~~~~ 160 (217)
| -...-+.|....+.+- +..+++| +|-||.+..|++ --.++++++.+.|++|=..+.... .
T Consensus 187 s----Qk~FE~~L~~~l~~~~--~~~i~vE~ESr~IG~~~iP~~l~~~M~~a~~i~i~~~~e~Rv~~l~~eY~~~----~ 256 (333)
T PRK11784 187 S----QKDFENLLAEALLKLD--PAPIVVEDESRRIGRVHLPEALYEAMQAAPIVEVEAPLEERVERLLEDYVHL----Y 256 (333)
T ss_pred C----HHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHH----H
T ss_conf 7----8999999999998089--9856996010030671389999999962988999899999999999985289----9
Q ss_pred HHHHHHHHHHH
Q ss_conf 69999999998
Q gi|254780457|r 161 YVKILEDLRNR 171 (217)
Q Consensus 161 ~~ev~~~i~~R 171 (217)
+.+.+..|.+|
T Consensus 257 l~~~l~~i~kr 267 (333)
T PRK11784 257 LAEALQRIRKR 267 (333)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986
No 213
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=96.29 E-value=0.0031 Score=40.21 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=27.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.-.+|.=|||||||||+-+.|| |+..=|+|.+
T Consensus 26 G~lvaLLGPSGSGKsTLLR~iA---GLe~pd~G~I 57 (241)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRVIA---GLEQPDSGRI 57 (241)
T ss_pred CEEEEEECCCCCCHHHHHHHHH---CCCCCCCCEE
T ss_conf 5279854689873789999983---5799984269
No 214
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.28 E-value=0.0035 Score=39.94 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=25.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=|||||||||+-+.|| |+...++|.+
T Consensus 26 Ge~~~i~GpSG~GKSTlLr~ia---Gl~~p~~G~I 57 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIA---GLEEPTSGRI 57 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 9899999999880999999997---6999986399
No 215
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.28 E-value=0.0038 Score=39.72 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88189866687789678999999981
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
+.-.|+|=||+||||||+.+.|.--+
T Consensus 29 ~G~~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999999985999999996725
No 216
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0034 Score=39.99 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=23.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||+||||||+.+.|+--+ --++|.
T Consensus 27 Ge~~~iiGpsGsGKSTLl~~i~gl~---~p~~G~ 57 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV---EPTSGS 57 (241)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC---CCCCEE
T ss_conf 9899999999833999999997499---998559
No 217
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.27 E-value=0.0031 Score=40.22 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=24.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+- +..-++|.+
T Consensus 36 GE~v~ivG~sGsGKSTLl~~i~G---l~~p~~G~I 67 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG---LDDGSSGEV 67 (228)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCEEE
T ss_conf 98999999998589999999966---999996799
No 218
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.27 E-value=0.0034 Score=40.02 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1898666877896789999999817
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
=+++|=||+||||||+.+.++--+.
T Consensus 31 e~~~iiG~sGsGKTTll~~i~Gl~~ 55 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8999999999869999999966999
No 219
>KOG2004 consensus
Probab=96.26 E-value=0.0051 Score=38.96 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE--EECCHH
Q ss_conf 55881898666877896789999999817835--620289
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHY--LDTGLI 42 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~--ldtG~~ 42 (217)
..+..|+..-||+|.||+|+||-||..||=.| ++-|-|
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 6788379986899877321899999984874699853663
No 220
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.26 E-value=0.0038 Score=39.74 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+++|=||+||||||+.+.|+--+
T Consensus 26 Gei~~iiG~nGaGKSTLl~~i~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998899998999999995685
No 221
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0031 Score=40.25 Aligned_cols=101 Identities=10% Similarity=0.120 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHCCC-------CEEEEEECCHHHHHHHHHHHHHHHHCCC-CHHHH
Q ss_conf 0578999988788887630-3884620641255663038-------8689984488889999866776521113-56999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQN-KLGVILDGRDIGTIIFPDA-------RIKFYVTASLDIRARRRYNEMVSRGEKV-DYVKI 164 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvVfPdA-------~~KifL~As~e~RA~RR~~el~~~g~~~-~~~ev 164 (217)
-.|.-|..+.+..+++.+. ...+|+=-.|+..+ ..-| +=+|..+.+++.= ..+-..+...|-.. ..-++
T Consensus 163 LD~~~~~~i~~ll~~L~~e~g~Tii~vTHdl~~~-~~~aDrvivm~~G~Iv~~G~p~ev-f~~p~~l~~~~l~~P~~~~l 240 (276)
T PRK13634 163 LDPKGRKEIMEMFYKLHKEKGLTTVLVTHSMEDA-ARYADQIVVMHKGTVFLQGTPREI-FSHPDELEAIGLDLPETVKF 240 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHCCEEEEEECCEEEEECCHHHH-HCCHHHHHHCCCCCCHHHHH
T ss_conf 7999999999999999996199999986799999-997999999989999998789999-72999999779999969999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999856102367578537997399977898989999999999998
Q gi|254780457|r 165 LEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 165 ~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
...|.+|.- +-++..-+|++|.++.|.++..+
T Consensus 241 ~~~L~~~~g----------------~~~~~~~~t~ee~~~~i~~~~~~ 272 (276)
T PRK13634 241 KRALEEKFG----------------ISFPKPTLTLEELAHEVVQVLRK 272 (276)
T ss_pred HHHHHHHHC----------------CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999989659----------------99998888999999999999975
No 222
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.24 E-value=0.0032 Score=40.14 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 818986668778967899999998178
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
.=+++|=||+||||||+.+.|+-.+.-
T Consensus 33 Ge~~~ilGpnGsGKSTLl~~i~G~~~~ 59 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGRVEG 59 (226)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 809999989996099999999678978
No 223
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0034 Score=40.03 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHC-CCEEEECCCHHHHHHCCCCEEEEEE-------CCHHHHHHHHHHHHHHHHCCCC-HHH
Q ss_conf 205789999887888876303-8846206412556630388689984-------4888899998667765211135-699
Q gi|254780457|r 93 ASIDSVRDALIDIQRSFAQNK-LGVILDGRDIGTIIFPDARIKFYVT-------ASLDIRARRRYNEMVSRGEKVD-YVK 163 (217)
Q Consensus 93 A~~p~VR~~l~~~Qr~~~~~~-~g~V~EGRDigTvVfPdA~~KifL~-------As~e~RA~RR~~el~~~g~~~~-~~e 163 (217)
+-.|..|..+.+..+++.++. -.+|+--.|+..+.- ||-=+.|. .+++. ....-..+...|-... .-.
T Consensus 170 ~LD~~~~~~i~~ll~~L~~~~~~Tii~iTHdl~~~~~--aDrv~vm~~G~Iv~~G~~~e-vf~~p~~l~~~~l~~P~~~~ 246 (277)
T PRK13642 170 MLDPTGRSEIMRVIHEIKDKYHLTVLSITHDLDEAAS--SDRILVMRAGEIIKEAAPSE-LFATSEDMVEIGLDVPFSSN 246 (277)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHH--CCEEEEEECCEEEEECCHHH-HHCCHHHHHHCCCCCCHHHH
T ss_conf 5898999999999999998169899999458899971--99899998999999768999-87696779877999987999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9999999856102367578537997399977898989999999999
Q gi|254780457|r 164 ILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGL 209 (217)
Q Consensus 164 v~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~ 209 (217)
+..++..+ .+-+....+|++|.++.+.+.
T Consensus 247 l~~~L~~~-----------------g~~~~~~~~t~~e~~~~l~~~ 275 (277)
T PRK13642 247 LMKDLRTN-----------------GFDLPEKYLSEDELVELLADK 275 (277)
T ss_pred HHHHHHHC-----------------CCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999975-----------------998998875999999999986
No 224
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0035 Score=39.93 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=24.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+--+ --++|.+
T Consensus 30 Ge~~~iiGpsGsGKSTLl~~i~Gl~---~p~~G~I 61 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE---RPTSGEV 61 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC---CCCCCEE
T ss_conf 9899999999957999999997599---9887389
No 225
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.23 E-value=0.0036 Score=39.88 Aligned_cols=23 Identities=43% Similarity=0.466 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 81898666877896789999999
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~ 30 (217)
.=++||=||+||||||+.+.|+-
T Consensus 32 Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 32 GEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHCC
T ss_conf 98999999999999999999727
No 226
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.21 E-value=0.0036 Score=39.87 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=26.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEECCHHHH
Q ss_conf 89866687789678999999981----783562028999
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEY----GFHYLDTGLIYR 44 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l----~~~~ldtG~~YR 44 (217)
..+|=|||||||||++|.|.--. |--.||.-.+|+
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCHHHHC
T ss_conf 678878887657789999981135678737756264512
No 227
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.21 E-value=0.0042 Score=39.47 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=24.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+. +.--++|.+
T Consensus 30 Ge~v~ivG~sGsGKSTLl~ll~g---l~~p~~G~I 61 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR---LVELSSGSI 61 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CCCCCCCEE
T ss_conf 98999999999989999999967---971898489
No 228
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0037 Score=39.78 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=23.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=|||||||||+.+.|+-- .--++|.
T Consensus 27 Ge~~~ilGpSG~GKSTllr~i~gl---~~p~~G~ 57 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL---IEPTSGE 57 (242)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC---CCCCCEE
T ss_conf 989999999995699999999759---9998159
No 229
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0042 Score=39.47 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=25.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+.+|=|||||||||+-+.+| |+.-.++|.
T Consensus 26 Ge~~~iiGpSGsGKSTllr~i~---Gl~~p~~G~ 56 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIA---GFETPTSGE 56 (232)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEE
T ss_conf 9899999999983999999997---799998539
No 230
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0039 Score=39.66 Aligned_cols=33 Identities=39% Similarity=0.578 Sum_probs=25.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
+.=+++|=||+||||||+-+.++ |+.--++|.+
T Consensus 23 ~Ge~~~ilGpSGsGKSTLl~li~---Gl~~p~sG~I 55 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIA---GFETPQSGRV 55 (211)
T ss_pred CCCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 99899999999955999999997---6999885299
No 231
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.19 E-value=0.0038 Score=39.70 Aligned_cols=32 Identities=34% Similarity=0.551 Sum_probs=25.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|| |+.-.++|.+
T Consensus 28 GE~~~llGpSGsGKSTLlr~ia---GL~~p~sG~I 59 (352)
T PRK10851 28 GQMVALLGPSGSGKTTLLRIIA---GLEHQTSGHI 59 (352)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 9899999999846999999997---6999995699
No 232
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.19 E-value=0.0039 Score=39.64 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=+++|=||+||||||+.+.|+--+.
T Consensus 36 Ge~vaivG~nGsGKSTLlk~l~Gll~ 61 (273)
T PRK13632 36 GEYVAILGHNGSGKSTISKILTGLLK 61 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999869999999973877
No 233
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.19 E-value=0.0035 Score=39.95 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=26.1
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 7655588189866687789678999999981783
Q gi|254780457|r 2 GRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFH 35 (217)
Q Consensus 2 ~~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~ 35 (217)
.++++|+.+| .-||+|+|||-+||+||..++-.
T Consensus 189 ~sLktKknvI-L~G~pGtGKT~lAk~lA~~l~g~ 221 (459)
T PRK11331 189 KRLTIKKNII-LQGPPGVGKTFVARRLAYLLTGE 221 (459)
T ss_pred HHHCCCCCEE-EECCCCCCHHHHHHHHHHHHHCC
T ss_conf 9854588279-65899988789999999997078
No 234
>PRK13768 GTPase; Provisional
Probab=96.19 E-value=0.0057 Score=38.68 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 18986668778967899999998178
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
..+-+=|||||||||.++.+.+++.-
T Consensus 3 ~~~~ViGpaGSGKsT~~~~l~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLVGALSDWLEE 28 (253)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 18999899999889999999999997
No 235
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=96.18 E-value=0.0032 Score=40.14 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6687789678999999981783
Q gi|254780457|r 14 DGTAAAGKGVLSRFIALEYGFH 35 (217)
Q Consensus 14 DGpagsGKsT~ak~lA~~l~~~ 35 (217)
=|||||||||.++.+.+++...
T Consensus 2 iGpaGSGKTT~~~~l~~~l~~~ 23 (234)
T pfam03029 2 VGGAGSGKTTFVGALSEILPLR 23 (234)
T ss_pred CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 8989898899999999999977
No 236
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0039 Score=39.66 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHCCCCEEEE-------EECCHHHHHHHHHHHHHHHHCCC-CHHHH
Q ss_conf 0578999988788887630-388462064125566303886899-------84488889999866776521113-56999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQN-KLGVILDGRDIGTIIFPDARIKFY-------VTASLDIRARRRYNEMVSRGEKV-DYVKI 164 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvVfPdA~~Kif-------L~As~e~RA~RR~~el~~~g~~~-~~~ev 164 (217)
-.|.-|..+.++.+++.+. ...+|+--.|+..+ ..||-=+. ...+++.= ..+...+...+-.. ..-++
T Consensus 175 LD~~~~~~i~~~l~~l~~e~g~TvI~itHd~~~a--~~aDrv~vm~~G~iv~~G~p~ev-f~~~~~l~~~~l~~P~~~~l 251 (283)
T PRK13640 175 LDPAGKEQILKLIRKLMKDNNLTIISITHDIDEA--AGADQVLVLDDGKLLAQGSPVEI-FPKVELLKRIGLDIPFVYKL 251 (283)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHH--HHCCEEEEEECCEEEEECCHHHH-HCCHHHHHHCCCCCCHHHHH
T ss_conf 8989999999999999970698999997887899--70998999999999997778998-57999999779999969999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9999998561023675785379973999778989899999999999
Q gi|254780457|r 165 LEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLI 210 (217)
Q Consensus 165 ~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I 210 (217)
...+.+|- +-++..-++.+|.++.++++-
T Consensus 252 ~~~L~~~g-----------------~~~~~~~~t~eel~~~l~~~~ 280 (283)
T PRK13640 252 KLKLKEKG-----------------ISVPQEINTEEKLVQYLCQLN 280 (283)
T ss_pred HHHHHHCC-----------------CCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999749-----------------999988789999999999875
No 237
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.0042 Score=39.43 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=24.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.-.+||=||+||||||+.+.|+--|. -++|.
T Consensus 29 Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~ 59 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYD---PQKGQ 59 (229)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC---CCCCE
T ss_conf 99999999999809999999966866---78738
No 238
>PRK06761 hypothetical protein; Provisional
Probab=96.17 E-value=0.0042 Score=39.42 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=90.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE----------CCHHHHHHHHHHH-------HCCCCHHHHHHHHHHHH---H
Q ss_conf 89866687789678999999981783562----------0289999985232-------10111014655333321---0
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD----------TGLIYRAVAKNIL-------DAGISLDDEKMAIKIAQ---N 69 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld----------tG~~YR~~a~~~~-------~~~~~~~~~~~~~~~~~---~ 69 (217)
.|-|-|-+||||||+|++|++.|.-.-.+ .-+=|=.+|++-. ++-.++.++ +.....+ .
T Consensus 4 LIiIEGlPGsGKSTta~~l~d~L~~~g~~v~~~~Egd~~hP~D~~~~A~~t~~e~~~ll~~~p~~~e~-l~k~~~~~~~y 82 (281)
T PRK06761 4 LIIIEGLPGFGKSTTAHLLNDKLSQLKIEVELFVEGDLNHPADYDWVACFTKFEYDRLLSNYPDFKEV-LLKNILKKGDY 82 (281)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHH-HHHHHHHCCCE
T ss_conf 79996689998014999999999866985389950789996111222104788899998857318899-99876631770
Q ss_pred --CCCCCCCC-------CC----CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH----CCCEEEECC-----------
Q ss_conf --11124444-------44----320121001111220578999988788887630----388462064-----------
Q gi|254780457|r 70 --IVLSNLDK-------AQ----LSSNAIANVASQVASIDSVRDALIDIQRSFAQN----KLGVILDGR----------- 121 (217)
Q Consensus 70 --i~~~~~~~-------~~----lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~----~~g~V~EGR----------- 121 (217)
+.+..... .. +...+|-. .....-+......=|.|+++ ..=.|.||=
T Consensus 83 ~l~~Y~k~~~~~~~~~~d~L~~~~~k~diY~-----lp~~~~~~~~~~rWr~Fa~~a~~~~~v~IFec~l~qnplt~lm~ 157 (281)
T PRK06761 83 YLLPYRKIKNEFGDQFSDELFNDISRNEIYE-----VPFDKFVELIADKWKDFAEIALEDNKVYIFECCLIQNPLNILMI 157 (281)
T ss_pred EEEEEEECHHCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHH
T ss_conf 4432110001047766737776642525640-----89999999999999999984067886499973543681899999
Q ss_pred --------------CHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH---------------HHH---CCCCHHHHHHHHH
Q ss_conf --------------12556630388689984488889999866776---------------521---1135699999999
Q gi|254780457|r 122 --------------DIGTIIFPDARIKFYVTASLDIRARRRYNEMV---------------SRG---EKVDYVKILEDLR 169 (217)
Q Consensus 122 --------------DigTvVfPdA~~KifL~As~e~RA~RR~~el~---------------~~g---~~~~~~ev~~~i~ 169 (217)
.....|-|=..+=|||..+--.++-|+...-. .-| .--.++-.++-+.
T Consensus 158 ~y~~~~~~i~~Yi~~L~~ii~~LNP~l~Yl~q~Dv~~~~rka~~ER~~eW~~~~~~y~t~~~Yg~~~~~~G~dG~i~~~e 237 (281)
T PRK06761 158 KYGAQEEKIINYIMKLAKIIENLNPMIFYLEQDNVEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNHSGVEGAIKVLE 237 (281)
T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHH
T ss_conf 85998899999999999997255968999707788999999998434789988899984372787628888503899999
Q ss_pred HHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9856102367578537997399977898989999999999
Q gi|254780457|r 170 NRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGL 209 (217)
Q Consensus 170 ~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~ 209 (217)
+|-..+.. -.+-| +-++..||+|.-..+.--+.+.+.
T Consensus 238 ~Rk~le~~-il~~L--~i~k~~I~ns~~~~~~~~~~~~~~ 274 (281)
T PRK06761 238 ARKQLELE-ILDML--KVKKEKINITKEEIDSYRSMLKDK 274 (281)
T ss_pred HHHHHHHH-HHHHC--CCCEEECCCCCCCHHHHHHHHHHH
T ss_conf 99899999-99708--865056577523779999999999
No 239
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.0043 Score=39.40 Aligned_cols=30 Identities=33% Similarity=0.323 Sum_probs=23.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+++|=||+||||||+.+.|+--+. -++|
T Consensus 25 GE~v~iiG~nGaGKSTLl~~i~Gll~---p~sG 54 (233)
T PRK10771 25 GEQVAILGPSGAGKSTLLNLIAGFLT---PASG 54 (233)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC---CCCE
T ss_conf 98999999999819999999965999---9855
No 240
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.17 E-value=0.0044 Score=39.33 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=23.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 189866687789678999999981783562028
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
=.|+|=||+||||||+.+.|..-+. ..+|.
T Consensus 48 e~vaIvG~sGsGKSTL~~ll~gl~~---p~~G~ 77 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMVD---IFDGK 77 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC---CCCCE
T ss_conf 9999999999819999999960566---78888
No 241
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.16 E-value=0.0045 Score=39.24 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=+++|=||.||||||+.|.|+--+.
T Consensus 27 G~i~~l~G~NGaGKSTLlkli~Gl~~ 52 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97999988999879999999977858
No 242
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.16 E-value=0.0046 Score=39.22 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 189866687789678999999981783562028
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
=.+||=|||||||||+=..|+--.. -++|.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~---pt~G~ 61 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDK---PTSGE 61 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---CCCCE
T ss_conf 8999989999989999999964667---88846
No 243
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=96.15 E-value=0.0047 Score=39.18 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 88189866687789678999999
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIA 29 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA 29 (217)
++-|-||=|||||||||+=|-|=
T Consensus 26 ~n~vTAlIGPSGCGKSTlLR~lN 48 (248)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLN 48 (248)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 77058987788986789999988
No 244
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.14 E-value=0.0024 Score=40.86 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=35.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHH
Q ss_conf 5588189866687789678999999981-7835620289999
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEY-GFHYLDTGLIYRA 45 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l-~~~~ldtG~~YR~ 45 (217)
..++.|+-.-||.||||||++..|-..| .|..-+-|++|+.
T Consensus 75 ~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~ 116 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTF 116 (361)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 712569999889988779999999999998626776855999
No 245
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.14 E-value=0.0061 Score=38.48 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 5558818986668778967899999998178356202
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
+.++.=+++|=||+||||||+.|.|+--+ --++|
T Consensus 22 ipk~GEi~gLiGpNGaGKSTLlk~i~Gll---~P~~G 55 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKL---KPNLG 55 (255)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCC---CCCCC
T ss_conf 89898099998999970999999996798---68875
No 246
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=96.14 E-value=0.0038 Score=39.70 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=26.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 588189866687789678999999981783562028
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
...+.|+.=|.|||||||+||.| +|+.-=-.|.
T Consensus 36 ~~Ge~~gLLG~SG~GKSTLArlL---lGLe~P~~G~ 68 (267)
T TIGR02769 36 EEGETVGLLGRSGCGKSTLARLL---LGLEKPAQGE 68 (267)
T ss_pred CCCCEEEECCCCCCCHHHHHHHH---HHCCCCCCCE
T ss_conf 37750552367887377899998---7507888740
No 247
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0076 Score=37.92 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=29.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 558818986668778967899999998178356
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~l 37 (217)
+.|.-|+..=||+|.||||+++-+|+-+|=.|+
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 678857999789988701189999999589779
No 248
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.13 E-value=0.0087 Score=37.56 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC----------EEECCHHHHHHHHH
Q ss_conf 88189866687789678999999981783----------56202899999852
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFH----------YLDTGLIYRAVAKN 49 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~----------~ldtG~~YR~~a~~ 49 (217)
.+=++.+-|++||||||+.+.+.+.|+-. .+++..+|+.++..
T Consensus 42 ~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~ 94 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAAD 94 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89659997299898899999999845934548999769999999999999998
No 249
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.12 E-value=0.003 Score=40.29 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=24.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 1898666877896789999999817835620289
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
=+++|=||+||||||+.+.|+ |+.--++|.+
T Consensus 28 ei~~iiG~nGaGKSTLlk~i~---Gl~~p~~G~I 58 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLN---GLLGPTSGEV 58 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCCCCE
T ss_conf 799998899998999999996---4677988877
No 250
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.12 E-value=0.0045 Score=39.29 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=.+||=||+||||||+.+.|..-|
T Consensus 28 G~~vaivG~sGsGKSTll~ll~gl~ 52 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999999985999999996776
No 251
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.0049 Score=39.07 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCC-------CEEEEEECCHHHHHHHHHHHHHHHHCCC-CHHHHH
Q ss_conf 05789999887888876303884620641255663038-------8689984488889999866776521113-569999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDA-------RIKFYVTASLDIRARRRYNEMVSRGEKV-DYVKIL 165 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA-------~~KifL~As~e~RA~RR~~el~~~g~~~-~~~ev~ 165 (217)
-.|.-|..+.++.+++.+....+|+=-.||.-+- .-| +=|+-...++++= ......+.+.|-.. ..-++.
T Consensus 207 LDp~~~~~i~~li~~l~~~g~TiilvTHdm~~v~-~~aDrviVm~~GkIv~~Gtp~ei-F~~~~~l~~~~l~~P~~~~l~ 284 (320)
T PRK13631 207 LDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKGKILKTGTPYEI-FTDQHIINSTSIQVPRVIQVI 284 (320)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-HHCCEEEEEECCEEEEECCHHHH-HCCHHHHHHCCCCCCCHHHHH
T ss_conf 9989999999999999962999999947899999-97999999989889997588998-659999997799999299999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999985610236757853799739997789898999999999999
Q gi|254780457|r 166 EDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 166 ~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
..|++|...=. -+.++..++++|-.+.|.+.++
T Consensus 285 ~~L~~~g~~~~-------------~~~~~~~~~~~~l~~~~~~~~~ 317 (320)
T PRK13631 285 NDLIKKDPKYK-------------KLYQKQPRTIEQLADAINEFIK 317 (320)
T ss_pred HHHHHCCCCCH-------------HHCCCCCCCHHHHHHHHHHHHC
T ss_conf 99997399833-------------3047886469999999999862
No 252
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.11 E-value=0.0061 Score=38.48 Aligned_cols=26 Identities=27% Similarity=0.129 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 18986668778967899999998178
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
=.++|=||+||||||+.+.|+--+..
T Consensus 35 e~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999998799999999987288
No 253
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0041 Score=39.54 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=22.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+++|=|||||||||+.+.|+- +..-++|
T Consensus 31 Ge~~~ivG~SGsGKSTllr~i~g---L~~p~sG 60 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCING---LERPTSG 60 (233)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCC
T ss_conf 99999988980589999999967---9999980
No 254
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.0049 Score=39.07 Aligned_cols=101 Identities=9% Similarity=0.114 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCEEEECCCHHHHH-HCC-----CCEEEEEECCHHHHHHHHHHHHHHHHCCC-CHHHHH
Q ss_conf 057899998878888763-0388462064125566-303-----88689984488889999866776521113-569999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQ-NKLGVILDGRDIGTII-FPD-----ARIKFYVTASLDIRARRRYNEMVSRGEKV-DYVKIL 165 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~-~~~g~V~EGRDigTvV-fPd-----A~~KifL~As~e~RA~RR~~el~~~g~~~-~~~ev~ 165 (217)
-.|..|..+..+.+++.. ...-+|+=-.||..+. +-| .+=++-...++++= ..+...+...|-.. ..-++.
T Consensus 176 LDp~~~~~i~~ll~~l~~~~g~TiI~iTHdm~~v~~~adrv~vm~~G~Iv~~G~p~ev-f~~~~~l~~~~l~~P~~~~l~ 254 (286)
T PRK13646 176 LDPQSKRQVMRLLKSLQTDENKAIILISHDMNEVARYADEVIVMKEGSIVSQTSPKEL-FKDKKKLADWHIGLPEIVQLQ 254 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH-HCCHHHHHHCCCCCCHHHHHH
T ss_conf 8989999999999999995398999991389999996999999989899997789999-779657987899998499999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999985610236757853799739997789898999999999999
Q gi|254780457|r 166 EDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 166 ~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
.++.+|.. +.+..-.+++++.++.+..+=+
T Consensus 255 ~~l~~~~~----------------~~~~~~~~t~e~~~~~~k~~~~ 284 (286)
T PRK13646 255 YDFEQKYQ----------------TKLKDIALTEEAFVSLYKEWQH 284 (286)
T ss_pred HHHHHHCC----------------CCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99998479----------------9867666429999999999754
No 255
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0055 Score=38.76 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=24.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 8818986668778967899999998178356202
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
+.=+++|=||+||||||+.+.|+--+. .++|
T Consensus 27 ~Ge~i~ivG~sGsGKSTLl~ll~gl~~---p~~G 57 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSG 57 (171)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC---CCCC
T ss_conf 998999999999839999999976775---8974
No 256
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.0049 Score=39.03 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88189866687789678999999981
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
+.=+++|=||+||||||+++.|+--+
T Consensus 27 ~Ge~vaiiG~nGsGKSTL~~~l~Gll 52 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 89999999999980999999997068
No 257
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.09 E-value=0.0051 Score=38.95 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=11.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 89866687789678999999981783
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFH 35 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~ 35 (217)
+.+|=|-|||||||++..|---+.+.
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 89998689888899999985548887
No 258
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.09 E-value=0.051 Score=32.99 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=30.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC--CCEEECCHHH
Q ss_conf 81898666877896789999999817--8356202899
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG--FHYLDTGLIY 43 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~--~~~ldtG~~Y 43 (217)
.|+|=|-|++.||||.-|-.+|..++ ..|+-|+.-|
T Consensus 1 gmi~LVtGG~rSGKS~~AE~la~~~~~~~~YiAT~~~~ 38 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPL 38 (170)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 98999979876348999999998569982999758888
No 259
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0052 Score=38.89 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=24.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=.++|=|||||||||+-+.|| |+..-++|.
T Consensus 29 GEfvsilGpSGcGKSTLLriiA---GL~~p~~G~ 59 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIA---GLEKPTSGE 59 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCCCCE
T ss_conf 9799998999788999999996---878777755
No 260
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.07 E-value=0.0054 Score=38.81 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=26.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH
Q ss_conf 818986668778967899999998178356202899
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIY 43 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~Y 43 (217)
.=.++|=||+||||||+.+.|+ |+.-.++|.++
T Consensus 27 Ge~v~i~G~sGsGKSTLl~~l~---Gl~~~~~G~i~ 59 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALA---GLWPWGSGRIG 59 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHC---CCCCCCCCEEE
T ss_conf 9999999589998899999986---98769986799
No 261
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=96.06 E-value=0.0056 Score=38.70 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=28.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHH
Q ss_conf 89866687789678999999981783562028999998
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVA 47 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a 47 (217)
++||=||..|||||++.+||..||-.. ++-.=|.+-
T Consensus 10 ~VailG~ESsGKStLv~kLA~~fnt~~--~wEY~Re~v 45 (187)
T COG3172 10 TVAILGGESSGKSTLVNKLANIFNTTS--AWEYGREYV 45 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC--HHHHHHHHH
T ss_conf 355645766571799999999968873--127789999
No 262
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.05 E-value=0.0056 Score=38.69 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=24.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|-||.||||||+.|.|+ |+.--++|.
T Consensus 26 Ge~~~l~G~NGsGKSTLlk~i~---Gl~~p~sG~ 56 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILA---GLSPPLAGR 56 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCCCEE
T ss_conf 9599999999999999999996---677888529
No 263
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.05 E-value=0.005 Score=38.99 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=24.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.||- +.-.++|.+
T Consensus 43 GE~~~llGpSGsGKSTLlr~iaG---l~~p~sG~I 74 (378)
T PRK09452 43 GEFLTLLGPSGCGKTTVLRLIAG---FETPDSGRI 74 (378)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCEEE
T ss_conf 98999998999769999999976---999984699
No 264
>KOG0733 consensus
Probab=96.05 E-value=0.0062 Score=38.43 Aligned_cols=50 Identities=26% Similarity=0.370 Sum_probs=34.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 986668778967899999998178356202899999852321011101465533332
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIA 67 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~ 67 (217)
+-+-||+|+||+.+|..+|-+|+.+|++--+ --+-.+++-+.++.+-+++
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isA-------peivSGvSGESEkkiRelF 275 (802)
T KOG0733 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISA-------PEIVSGVSGESEKKIRELF 275 (802)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEECC-------HHHHCCCCCCCHHHHHHHH
T ss_conf 1644899864789999975212885485141-------4653155752289999999
No 265
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.05 E-value=0.0044 Score=39.36 Aligned_cols=101 Identities=11% Similarity=0.140 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHCCCC-------EEEEEECCHHHHHHHHHHHHHHHHCCC-CHHHH
Q ss_conf 0578999988788887630-38846206412556630388-------689984488889999866776521113-56999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQN-KLGVILDGRDIGTIIFPDAR-------IKFYVTASLDIRARRRYNEMVSRGEKV-DYVKI 164 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvVfPdA~-------~KifL~As~e~RA~RR~~el~~~g~~~-~~~ev 164 (217)
-.|.-|..+....+++.+. ...+|+=-.|+..+. .-|| =||-.+.++++ ...+...+.+.|-.. ...++
T Consensus 175 LDp~~~~~i~~~l~~L~~e~g~Tvi~vTHdl~~v~-~~aDRvivl~~G~Iv~~Gtp~e-vf~~~~~l~~~~l~~P~~~~l 252 (287)
T PRK13637 175 LDPKGRDDILEKIKALHKEYNMTIILVSHSMEDVA-KIADRIIVMNKGRCELQGTPRE-VFKEVDTLESIGLAVPQVTYL 252 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-HHCCEEEEEECCEEEEECCHHH-HHCCHHHHHHCCCCCCHHHHH
T ss_conf 89999999999999999850989999957999999-9699999998999999878899-876988998769999919999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999998561023675785379973999778989899999999999987
Q gi|254780457|r 165 LEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 165 ~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
...+.++ + +-+.+..++++|..+.+++++.++
T Consensus 253 ~~~L~~~----------------g-~~~~~~~~t~~e~~~~l~~~l~~~ 284 (287)
T PRK13637 253 VRKLRKK----------------G-FNIPDDIFTIEEAKEELLKYLRSA 284 (287)
T ss_pred HHHHHHC----------------C-CCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999975----------------9-999988668999999999999767
No 266
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.05 E-value=0.005 Score=38.97 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 189866687789678999999981
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
=+++|=|||||||||+-+.||--+
T Consensus 32 E~~~llGpSG~GKTTlLr~iaGL~ 55 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999745999999997776
No 267
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.04 E-value=0.0061 Score=38.47 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=+++|=||+||||||+.+.|..-+.
T Consensus 30 Ge~vaIvG~sGsGKSTLl~lL~gl~~ 55 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999979999999960357
No 268
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.005 Score=38.99 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=24.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.||- +.-.++|.+
T Consensus 30 Ge~~~llGpsG~GKTTllr~iaG---l~~p~~G~I 61 (358)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAG---LERITSGEI 61 (358)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCEEE
T ss_conf 98999999986369999999976---999886299
No 269
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.01 E-value=0.0056 Score=38.70 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=24.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+-.+ ...+|.+
T Consensus 27 Ge~~~IvG~sGsGKSTLl~~l~g~~---~~~~G~I 58 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGEM---QTLEGKV 58 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCCCCEE
T ss_conf 9999999999980999999985556---5677649
No 270
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.00 E-value=0.004 Score=39.59 Aligned_cols=80 Identities=25% Similarity=0.262 Sum_probs=43.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
Q ss_conf 81898666877896789999999817835620289999985232101110146553333210111244444432012100
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIAN 87 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~ 87 (217)
.=|.||=||=||||||+|+.||=|-.|.- .+|- +.=.+.++.+-+-....-..+++...--.+|
T Consensus 26 GE~HAiMGPNGsGKSTL~~~iaGhp~y~v-t~G~--------I~f~G~Dll~l~~~ERAR~GlFLaFQ~P~EI------- 89 (248)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGHPKYEV-TSGT--------ILFKGQDLLELEPDERARAGLFLAFQYPEEI------- 89 (248)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCEEE-EEEE--------EEECCEECCCCCHHHHHCCCCEECCCCCCCC-------
T ss_conf 51799868899847888777617993378-4208--------9877652001896556405651015888556-------
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 111122057899998878
Q gi|254780457|r 88 VASQVASIDSVRDALIDI 105 (217)
Q Consensus 88 ~~S~iA~~p~VR~~l~~~ 105 (217)
+=|+-.-.+|.+++..
T Consensus 90 --PGV~~~~FlR~A~NA~ 105 (248)
T TIGR01978 90 --PGVSNLEFLRSALNAR 105 (248)
T ss_pred --CCCCHHHHHHHHHHHH
T ss_conf --8857788999999999
No 271
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.99 E-value=0.0054 Score=38.81 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9866687789678999999981783
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFH 35 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~ 35 (217)
+=+-||+|+||+|+|+.+|+.+...
T Consensus 40 lLf~GppG~GKTt~a~~la~~l~~~ 64 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALARELYGE 64 (318)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9888959988999999999997698
No 272
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.97 E-value=0.0059 Score=38.56 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=25.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=.++|=||+||||||+.+.|+--|. -++|.+
T Consensus 28 Ge~~aivG~sGsGKSTLl~~l~G~~~---p~~G~i 59 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEI 59 (178)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCC---CCCCEE
T ss_conf 99999999998759999999986176---678869
No 273
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.95 E-value=0.0059 Score=38.58 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=23.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||+||||||+.|.|+--+ --++|.
T Consensus 34 Gei~~iiGpnGsGKSTLlk~i~Gl~---~p~~G~ 64 (269)
T PRK11831 34 GKITAIMGPSGIGKTTLLRLIGGQI---APDHGE 64 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC---CCCCCE
T ss_conf 9899999399975999999996798---889866
No 274
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.0067 Score=38.24 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||+||||||+.+.|+ |+..-++|.
T Consensus 28 Ge~~~iiG~nGaGKSTLl~~l~---gl~~p~~G~ 58 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLN---LLEMPRSGT 58 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCCCEE
T ss_conf 9899999999971999999996---588888608
No 275
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.0066 Score=38.28 Aligned_cols=102 Identities=9% Similarity=0.073 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCC-------CEEEEEECCHHHHHHHHHHHHHHHHCCC-CHHHHH
Q ss_conf 05789999887888876303884620641255663038-------8689984488889999866776521113-569999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDA-------RIKFYVTASLDIRARRRYNEMVSRGEKV-DYVKIL 165 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA-------~~KifL~As~e~RA~RR~~el~~~g~~~-~~~ev~ 165 (217)
-.|.-+..+.+..+++.+...-+|+=-.||..+ ..-| +=|+..+.++++ ...+...+...|-.. ..-++.
T Consensus 192 LDp~~~~~i~~~l~~L~~~G~TVI~vTHdm~~v-~~~adRvivl~~G~Iv~~G~p~e-vf~~~~~l~~~~l~~P~~~~l~ 269 (304)
T PRK13651 192 LDPQGVKEILEIFDTLNKKGKTIILVTHDLDNV-LEWTKRTIFFKDGKIIKDGDTYE-ILNDEKFLIENKMLPPKLLNFV 269 (304)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHCCEEEEEECCEEEEECCHHH-HHCCHHHHHHCCCCCCHHHHHH
T ss_conf 898999999999999997799999986789999-99799999998998999868899-8679889987799998199999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999856102367578537997399977898989999999999998740
Q gi|254780457|r 166 EDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 166 ~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
.+|.+| --|+ + .-+|++|.++.+.++..+|-+
T Consensus 270 ~~L~~~--------g~~~---------~-~~~t~~e~~~~~~~~~~~~~~ 301 (304)
T PRK13651 270 NKLIKK--------GIPI---------S-KVTSIDELASEINMYLQKKTK 301 (304)
T ss_pred HHHHHC--------CCCC---------C-CCCCHHHHHHHHHHHHHHCCC
T ss_conf 999976--------9999---------9-868899999999999986204
No 276
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0049 Score=39.03 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8189866687789678999999
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIA 29 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA 29 (217)
.=+++|=|+|||||||+++.|+
T Consensus 41 GE~lgiVGeSGsGKSTL~~~l~ 62 (327)
T PRK11308 41 GKTLAVVGESGCGKSTLARLLT 62 (327)
T ss_pred CCEEEEECCCCHHHHHHHHHHH
T ss_conf 9999999998319999999995
No 277
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.93 E-value=0.0067 Score=38.23 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 1898666877896789999999817835620289
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
=+++|=||+||||||+.+.|+-- .--++|.+
T Consensus 33 Ei~~iiG~nGaGKSTLl~~i~G~---~~p~~G~I 63 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSAR---LAPDAGEV 63 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC---CCCCCCEE
T ss_conf 79999888998899999998567---88888739
No 278
>PRK10744 phosphate transporter subunit; Provisional
Probab=95.92 E-value=0.0068 Score=38.21 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 881898666877896789999999817
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
+.=+++|=||+||||||+.|.|+--++
T Consensus 35 ~Ge~~~liG~nGaGKSTLlk~i~gl~~ 61 (257)
T PRK10744 35 KNQVTAFIGPSGCGKSTLLRTFNKMYE 61 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 998999999999819999999987651
No 279
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.91 E-value=0.0068 Score=38.18 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=23.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+++|=||+||||||+.+.|+-...+ ..++|
T Consensus 27 Gei~~iiG~nGaGKSTLl~~i~G~~~~-~~~~G 58 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGREDY-EVTGG 58 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCC
T ss_conf 979999999999999999998377556-87523
No 280
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.91 E-value=0.0066 Score=38.29 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 8818986668778967899999998178356202
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
+.=+++|=|||||||||+-+-|. ++.-.++|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN---~LE~~~~G 57 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLN---GLEEPDSG 57 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCCCCCC
T ss_conf 89789998999998889999997---78688786
No 281
>KOG0058 consensus
Probab=95.90 E-value=0.0082 Score=37.73 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 898666877896789999999817
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
++|+=|||||||||++.+|-.-|.
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058 496 VVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 799988999888999999997368
No 282
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.0063 Score=38.40 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=23.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+-+.++--+. -++|.+
T Consensus 27 Ge~~~lvGpnGaGKSTLl~~i~Gl~~---p~~G~I 58 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP---PQHGSI 58 (255)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC---CCCCEE
T ss_conf 98999999998469999999975998---899718
No 283
>PRK10908 cell division protein FtsE; Provisional
Probab=95.89 E-value=0.0062 Score=38.46 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=24.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||+||||||+.+.++- +.-.++|.
T Consensus 28 Ge~~~liG~nGsGKSTLl~~i~G---l~~p~~G~ 58 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICG---IERPSAGK 58 (222)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCEE
T ss_conf 98999999998079999999965---99998629
No 284
>PRK13764 ATPase; Provisional
Probab=95.88 E-value=0.0071 Score=38.08 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 898666877896789999999817
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
=|-|.||+|+||||.|+.||..|.
T Consensus 261 GilIaG~PGaGKsTfaqalA~~~~ 284 (605)
T PRK13764 261 GILIAGAPGAGKSTFAQALAEFYA 284 (605)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499977999977899999999998
No 285
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.87 E-value=0.0065 Score=38.33 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHH-HCC-----CCEEEEEECCHHHHHHHHHHHHHHHHCCCC-HHHHHH
Q ss_conf 578999988788887630-388462064125566-303-----886899844888899998667765211135-699999
Q gi|254780457|r 95 IDSVRDALIDIQRSFAQN-KLGVILDGRDIGTII-FPD-----ARIKFYVTASLDIRARRRYNEMVSRGEKVD-YVKILE 166 (217)
Q Consensus 95 ~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvV-fPd-----A~~KifL~As~e~RA~RR~~el~~~g~~~~-~~ev~~ 166 (217)
.|.-|..+..+.+++.+. ...+|+=-.||..+- +-| .+=|+....++++=-.+ ...|...|-... ..++..
T Consensus 182 Dp~~~~~i~~ll~~L~~~~g~Tvi~vtHdm~~v~~~aDrviVm~~G~iv~~G~p~evf~~-~~~l~~~~l~~P~~~~l~~ 260 (289)
T PRK13645 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN-QELLTKIEIDPPKLYQLMY 260 (289)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-HHHHHHCCCCCCHHHHHHH
T ss_conf 989999999999999995699999991599999997999999989989998788998679-9999977999985999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99998561023675785379973999778989899999999999
Q gi|254780457|r 167 DLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLI 210 (217)
Q Consensus 167 ~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I 210 (217)
.|++|.. -+++++-+|++|..+.+.+.+
T Consensus 261 ~L~~~g~----------------~~~~~~~~t~ee~~~~l~~~~ 288 (289)
T PRK13645 261 KLKNKGI----------------DLLNKNIRTIEEFAKELAKVL 288 (289)
T ss_pred HHHHCCC----------------CCCCCCCCCHHHHHHHHHHHH
T ss_conf 9997699----------------888999799999999999975
No 286
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0072 Score=38.05 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 18986668778967899999998178
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
=.|||=|+|||||||+.+.++..|..
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 76888779998789999999723587
No 287
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=95.87 E-value=0.0043 Score=39.40 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=15.2
Q ss_pred EEECCCCCCHHHH-----HHHHHHHHCCCEEECCHHHHHHHHH
Q ss_conf 8666877896789-----9999998178356202899999852
Q gi|254780457|r 12 AIDGTAAAGKGVL-----SRFIALEYGFHYLDTGLIYRAVAKN 49 (217)
Q Consensus 12 aIDGpagsGKsT~-----ak~lA~~l~~~~ldtG~~YR~~a~~ 49 (217)
.|-|+|||||||+ .+.++..|+-.....|.+-+...+.
T Consensus 669 ~iTGVSGSGKSTLind~L~~~~~~~L~~~~~~~g~~~~I~G~e 711 (956)
T TIGR00630 669 CITGVSGSGKSTLINDTLYPALARRLNGAKTEPGRYKDIEGLE 711 (956)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 9974458745777999999999999852764566520363000
No 288
>COG4240 Predicted kinase [General function prediction only]
Probab=95.86 E-value=0.0052 Score=38.88 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=25.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 5881898666877896789999999817835
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
..++|+-|.||-||||||+|-.|-..|--.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg 78 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKG 78 (300)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 7963998526888765359999999999736
No 289
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.86 E-value=0.0068 Score=38.21 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=23.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 189866687789678999999981783562028
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
=+++|=||+||||||+.|.|+--+ .-++|.
T Consensus 26 Eiv~liGpNGaGKSTLlk~l~Gll---~p~~G~ 55 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL---KPDEGD 55 (246)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC---CCCCCE
T ss_conf 899999799976999999997787---888607
No 290
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.85 E-value=0.01 Score=37.16 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=30.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCE---------EECCHHHH
Q ss_conf 5881898666877896789999999817835---------62028999
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHY---------LDTGLIYR 44 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~---------ldtG~~YR 44 (217)
..++++|+-||+|+||||+-+-|.++|.=.. +-||.--|
T Consensus 37 pPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rR 84 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRR 84 (225)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEE
T ss_conf 999699998989977889999999998544375578887999468426
No 291
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0077 Score=37.88 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=24.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||+||||||+.+.|+ |+..-++|.
T Consensus 37 Ge~~~liG~NGaGKSTLl~~l~---gl~~p~~G~ 67 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLG---RHQPPSEGE 67 (265)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCCE
T ss_conf 9899999999980999999995---688998738
No 292
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.83 E-value=0.0061 Score=38.48 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=24.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 86668778967899999998178356202
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
-.-||.|+||+|+|+.+|+.+|+..-.+|
T Consensus 42 Lf~GprG~GKTs~Ari~akalnc~~~~~~ 70 (541)
T PRK05563 42 LFCGTRGTGKTSTAKIFAKAVNCLNPQDG 70 (541)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 30387995899999999999579998889
No 293
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.83 E-value=0.0071 Score=38.09 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=26.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+.+|=|||||||||+-+.|| |+.-.++|.+
T Consensus 30 Ge~~~llGpSG~GKtTlLr~ia---Gl~~p~~G~I 61 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIA---GLERQTAGTI 61 (353)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 9999999999535999999997---6999987399
No 294
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.0073 Score=38.03 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=24.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.||- +.-.++|.+
T Consensus 29 Ge~~~llGpsG~GKSTllr~i~G---l~~p~~G~I 60 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAG---LEDITSGDL 60 (369)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCEEE
T ss_conf 98999999997369999999977---999995499
No 295
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.80 E-value=0.0096 Score=37.30 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 89866687789678999999981
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.|-|-|+||+||||+++++|...
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~w 24 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLW 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998279898999999999999
No 296
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.79 E-value=0.0085 Score=37.62 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.5
Q ss_pred EEECCCCCCHHHHHHHHHHHH-CCCEE
Q ss_conf 866687789678999999981-78356
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEY-GFHYL 37 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l-~~~~l 37 (217)
=+-||+|+|||++|+.+|+.+ +.++.
T Consensus 3 ll~Gp~G~GKT~la~~la~~l~~~~~~ 29 (139)
T pfam07728 3 LLVGPPGTGKSELAERLAAALSNRPVF 29 (139)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCH
T ss_conf 999899756999999999980798311
No 297
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=95.79 E-value=0.0076 Score=37.92 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=23.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
Q ss_conf 189866687789678999999981----7835620
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEY----GFHYLDT 39 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l----~~~~ldt 39 (217)
=++.|=|||||||||+-|+|-.=. |--|+|-
T Consensus 20 Ei~vi~GlSGsGKsT~vrmlNRLIEPt~G~i~IDG 54 (372)
T TIGR01186 20 EIFVIMGLSGSGKSTLVRMLNRLIEPTAGQIFIDG 54 (372)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECC
T ss_conf 38999778998578999998722577787467662
No 298
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.78 E-value=0.0073 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=25.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+- +..-++|.+
T Consensus 38 GEiv~LiG~nGaGKSTLlr~i~G---l~~p~~G~I 69 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAG---LETPTAGDL 69 (257)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCCEE
T ss_conf 98999998998889999999965---898888708
No 299
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=95.76 E-value=0.011 Score=36.88 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=25.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5881898666877896789999999817
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.-+++|+|+||=||||||+-+++.+.|.
T Consensus 18 ~~~~vIgl~G~WGsGKTs~l~~~~~~L~ 45 (301)
T pfam07693 18 APGFVIGLYGAWGSGKTSFLNLLEDELK 45 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9997999989899999999999999986
No 300
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=95.73 E-value=0.0086 Score=37.58 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=24.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
Q ss_conf 98666877896789999999817835620
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDT 39 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldt 39 (217)
|-.=||.|||||-+|+.||+-++-+|+-.
T Consensus 53 ILmIGPTGvGKTeIARrLAkl~~aPFvkv 81 (442)
T PRK05201 53 ILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (442)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 68878888667899999999848985875
No 301
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.0084 Score=37.65 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=23.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 98666877896789999999817835
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
.-..||.|+||+|+|+.+|+.|++.+
T Consensus 43 YLF~GPRGvGKTT~ARIfAKaLNC~~ 68 (718)
T PRK07133 43 YLFSGPHGTGKTSVAKIFANALNCSH 68 (718)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 86238998688999999999967999
No 302
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.0082 Score=37.72 Aligned_cols=100 Identities=11% Similarity=0.049 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCC-------EEEEEECCHHHHHHHHHHHHHHHHCCC-CHHHHH
Q ss_conf 057899998878888763038846206412556630388-------689984488889999866776521113-569999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDAR-------IKFYVTASLDIRARRRYNEMVSRGEKV-DYVKIL 165 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~-------~KifL~As~e~RA~RR~~el~~~g~~~-~~~ev~ 165 (217)
-.|.-|..+.++.+++.+...-+|+=-.|+.-+ .--|| =++..+-++++= .+....+.+.+-.. ..-++.
T Consensus 175 LDp~~~~~i~~ll~~l~~~G~TiI~vtHd~~~v-~~~adrvivl~~G~Iv~~Gtp~ev-f~~~~~l~~~~l~~P~~~~l~ 252 (288)
T PRK13643 175 LDPKARIEMMQLFESIHQSGQTVVLVTHLMDDV-ADYADYVYLLEKGHIISCGTPSDV-FQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHCCEEEEEECCEEEEECCHHHH-HCCHHHHHHCCCCCCHHHHHH
T ss_conf 899999999999999995399999986089999-997999999989999998788998-669999997699998499999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999985610236757853799739997789898999999999999
Q gi|254780457|r 166 EDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 166 ~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
..+.+| +.+..+...+|++|-++.+..+-.
T Consensus 253 ~~L~~~----------------g~~~~~~~p~t~~e~~~~l~~l~~ 282 (288)
T PRK13643 253 DQLQKT----------------GAVTFEKLPITRAELVTLLTSLSV 282 (288)
T ss_pred HHHHHC----------------CCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 999976----------------998867798989999999996142
No 303
>PRK13695 putative NTPase; Provisional
Probab=95.72 E-value=0.006 Score=38.51 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 881898666877896789999999817
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
..|.|-|-||+|+||||+-+++.+.|.
T Consensus 2 ~~~kI~iTG~PGvGKTTli~Kv~~~L~ 28 (174)
T PRK13695 2 AALRIGITGMPGVGKTTLVLKIAELLA 28 (174)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 842999878999889999999999986
No 304
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=95.71 E-value=0.01 Score=37.19 Aligned_cols=39 Identities=26% Similarity=0.530 Sum_probs=27.6
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHC----CCEEECCHHH
Q ss_conf 6555881898666877896789999999817----8356202899
Q gi|254780457|r 3 RLESQSIIIAIDGTAAAGKGVLSRFIALEYG----FHYLDTGLIY 43 (217)
Q Consensus 3 ~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~----~~~ldtG~~Y 43 (217)
+|..+.+.+ -||+|+||+.+|-.+|+.|| |..++..-+|
T Consensus 47 K~aGraiLl--aGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvy 89 (395)
T pfam06068 47 KIAGRAVLI--AGPPGTGKTALAIAISKELGEDTPFCPISGSEVY 89 (395)
T ss_pred CCCCCEEEE--ECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEE
T ss_conf 757738998--7799988899999999974879973450011121
No 305
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.0095 Score=37.34 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=52.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHH----HHHHHH------------HHCCCC
Q ss_conf 8986668778967899999998178356202899999852321011101465----533332------------101112
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEK----MAIKIA------------QNIVLS 73 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~----~~~~~~------------~~i~~~ 73 (217)
.+++=|||||||||+=+.|| |+.-.++|.+| + .+.+.++.. ...-.+ .|+-|
T Consensus 31 f~vllGPSGcGKSTlLr~IA---GLe~p~~G~I~-------i-~g~~vt~l~P~~R~iamVFQ~yALyPhMtV~~Niaf- 98 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIA---GLEEPTSGEIL-------I-DGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAF- 98 (338)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEE-------E-CCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHH-
T ss_conf 99998999888899999996---88778871599-------9-999999899557888999378301578769997341-
Q ss_pred CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 444444320121001111220578999988788887630388462064
Q gi|254780457|r 74 NLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGR 121 (217)
Q Consensus 74 ~~~~~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGR 121 (217)
.+....+.-.+|...+..+|+.-.+.+.|...-+++.....-=|.-||
T Consensus 99 ~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 99 GLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 664479956888999999998739866773590117725678999987
No 306
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.0086 Score=37.60 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+++|=||+||||||+++.|+--+
T Consensus 33 Ge~~aiiG~nGsGKSTLl~~l~Gl~ 57 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999599986999999996699
No 307
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.028 Score=34.57 Aligned_cols=29 Identities=34% Similarity=0.370 Sum_probs=23.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 18986668778967899999998178356202
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
=+++|=||+||||||+.+.|+--+ ..++|
T Consensus 26 e~~~i~G~nGaGKSTLl~~l~gl~---~~~~G 54 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSG 54 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCCCC
T ss_conf 799998788999899999995884---79962
No 308
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.0077 Score=37.89 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCE-------EEEEECCHHHHHHHHHHHHHHHHCCC-CHHHHH
Q ss_conf 0578999988788887630388462064125566303886-------89984488889999866776521113-569999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARI-------KFYVTASLDIRARRRYNEMVSRGEKV-DYVKIL 165 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~-------KifL~As~e~RA~RR~~el~~~g~~~-~~~ev~ 165 (217)
-.|.-|..+.++.+++.+....+|+=-.||..+ ..-||- |+-.+.+++.= ...-..+...|-.. ....+.
T Consensus 176 LDp~~~~~i~~ll~~l~~~G~Tii~vtHd~~~v-~~~adrv~vm~~G~iv~~G~p~ev-f~~~~~l~~~~l~~P~~~~~~ 253 (286)
T PRK13641 176 LDPEGRKEMMQIFKDYQKAGHTVILVTHNMDDV-AEYADDVLVLEHGKLIKHASPKEI-FSDSEWLKKHYLDEPATSRFA 253 (286)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHCCEEEEEECCEEEEECCHHHH-HCCHHHHHHCCCCCCHHHHHH
T ss_conf 899999999999999996399999991599999-997999999989999997799999-659999997799999399999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999985610236757853799739997789898999999999999
Q gi|254780457|r 166 EDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 166 ~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
.+|.++. +.++.+.+|++|.++.+.+.++
T Consensus 254 ~~L~~~g-----------------~~~~~~~lt~~e~~~~l~~~l~ 282 (286)
T PRK13641 254 SKLEKGG-----------------FKFSENPLTIDELVDGIKNNLK 282 (286)
T ss_pred HHHHHCC-----------------CCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9999759-----------------9999998799999999999963
No 309
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=95.68 E-value=0.015 Score=36.12 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=27.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655588189866687789678999999981
Q gi|254780457|r 3 RLESQSIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 3 ~~~~k~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.-..|+++...-||+|+||+=+|++||+.|
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~vs~liA~~L 77 (127)
T pfam06309 48 PKPRKPLVLSFHGWTGTGKNFVAEIIADNL 77 (127)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 999997488701899987989999999998
No 310
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.0093 Score=37.38 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCC-------EEEEEECCHHHHHHHHHHHHHHHHCCCC-HHHHH
Q ss_conf 057899998878888763038846206412556630388-------6899844888899998667765211135-69999
Q gi|254780457|r 94 SIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDAR-------IKFYVTASLDIRARRRYNEMVSRGEKVD-YVKIL 165 (217)
Q Consensus 94 ~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~-------~KifL~As~e~RA~RR~~el~~~g~~~~-~~ev~ 165 (217)
-.|.-+..+.++.+++.+....+|+=-.|+..+ ..-|| =++..+-++++ .......+...|-... .-++.
T Consensus 168 LDp~~~~~i~~ll~~l~~~G~Tii~iTHdm~~~-~~~adrv~vl~~G~iv~~G~p~e-vf~~~~~l~~~~l~~P~~~~l~ 245 (275)
T PRK13639 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVDLV-PIYANKIYVLNDGKIIKGGTPKE-IFSDSETIRSANLRLPRVAHLI 245 (275)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHCCEEEEEECCEEEEECCHHH-HHCCHHHHHHCCCCCCHHHHHH
T ss_conf 899999999999999997699999993899999-99699999998998999878899-8749999997799999099999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999985610236757853799739997789898999999999999
Q gi|254780457|r 166 EDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLID 211 (217)
Q Consensus 166 ~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~ 211 (217)
..+.+.+ .+.+ ...+|++|....+.++++
T Consensus 246 ~~L~~~~----------------~~~~-~~~~t~~e~~~~~~~~~~ 274 (275)
T PRK13639 246 ELLNKED----------------NLGI-KMGYTIGEARRNIKEFIK 274 (275)
T ss_pred HHHHHCC----------------CCCC-CCCCCHHHHHHHHHHHHC
T ss_conf 9997536----------------9988-887469999999999854
No 311
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.66 E-value=0.0092 Score=37.41 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+++|=||.||||||+.+.|+--+
T Consensus 31 Ge~~aiiG~NGsGKSTLl~~l~Gl~ 55 (273)
T PRK13647 31 GSKTAILGPNGAGKSTLLLHLNGIY 55 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999975999999996698
No 312
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.66 E-value=0.009 Score=37.47 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=+++|=||+||||||+.+.|+-.+.
T Consensus 27 Ge~~aliG~nGaGKSTLl~~i~G~l~ 52 (273)
T PRK13547 27 GRVTALLGRNGAGKSTLLKVLAGELT 52 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999769999999956788
No 313
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.64 E-value=0.008 Score=37.76 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 986668778967899999998178356
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~l 37 (217)
--..||.|+||||+|+.+|+.||+.-.
T Consensus 46 ylf~G~rG~GKTt~Ari~ak~lnc~~~ 72 (507)
T PRK06645 46 YLLTGIRGVGKTTSARIIAKAVNCSAL 72 (507)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 774587997889999999999679998
No 314
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.63 E-value=0.0097 Score=37.29 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=24.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+-... ...++|.+
T Consensus 26 Gei~~iiGpnGaGKSTLl~~i~G~~~-~~~~~G~I 59 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEI 59 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC-CCCCCCEE
T ss_conf 98999996899999999999707777-78520079
No 315
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.62 E-value=0.0088 Score=37.53 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=25.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCE--EECCHHHHH
Q ss_conf 8666877896789999999817835--620289999
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHY--LDTGLIYRA 45 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~--ldtG~~YR~ 45 (217)
=+=||+|-||||+|..+|+.+|-.. -+-+++=|.
T Consensus 34 LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kP 69 (305)
T TIGR00635 34 LLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP 69 (305)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf 631756874678999999983893267406755475
No 316
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=95.60 E-value=0.011 Score=36.85 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=27.9
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 55588189866687789678999999981783
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEYGFH 35 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~ 35 (217)
.-.+.-+|+..|+-||||||.+|.+++.||..
T Consensus 11 ~l~~G~vi~L~G~LGaGKTtfvr~i~~~lg~~ 42 (123)
T pfam02367 11 LLKAGDVVLLSGDLGAGKTTFVRGLAKGLGIT 42 (123)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 68999799998887788999999999985998
No 317
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.59 E-value=0.011 Score=36.90 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=25.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 5881898666877896789999999817835620289
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.+.=+++|=||+|+||||+.|.|+ |...-++|..
T Consensus 23 ~~GEiv~ilGpNGaGKSTllk~i~---G~l~p~~G~i 56 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILA---GQLIPNGDND 56 (177)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH---CCCCCCCCCE
T ss_conf 899899998999999999999996---8867889946
No 318
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.58 E-value=0.0089 Score=37.51 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 81898666877896789999999
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~ 30 (217)
.=+++|=||+||||||+++.|+-
T Consensus 26 Gei~~LvG~sGsGKSTL~~~l~G 48 (520)
T TIGR03269 26 GEVLGILGRSGAGKSVLMHVLRG 48 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999699999999965
No 319
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.58 E-value=0.011 Score=36.88 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=24.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||.||||||+.+.|+- +.--++|.+
T Consensus 27 Ge~~~l~G~NGaGKSTLl~~l~G---l~~p~~G~i 58 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAG---LARPDAGEV 58 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CCCCCCCEE
T ss_conf 98999999999859999999976---888887379
No 320
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.0097 Score=37.29 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 881898666877896789999999817
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
+.=+++|=||+||||||+++.+..-+.
T Consensus 28 ~Ge~~aiiG~SGsGKStl~k~llgll~ 54 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999998789999999957998
No 321
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.56 E-value=0.01 Score=37.18 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+++|=||.||||||+.+.++--+
T Consensus 30 Ge~~aliG~NGaGKSTLl~~i~Gll 54 (277)
T PRK13652 30 KQRIAVIGPNGAGKSTLFKHFNGIL 54 (277)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999947999999996699
No 322
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.56 E-value=0.16 Score=30.06 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=56.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CCEEECCHHHHH--HHHHHHH-CCC-CHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 898666877896789999999817-----835620289999--9852321-011-1014655333321011124444443
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG-----FHYLDTGLIYRA--VAKNILD-AGI-SLDDEKMAIKIAQNIVLSNLDKAQL 80 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~-----~~~ldtG~~YR~--~a~~~~~-~~~-~~~~~~~~~~~~~~i~~~~~~~~~l 80 (217)
.+-.-||+|+||+.+||.||+.|+ +..+|-+.+.-. ++.+.-. .+. ...+.-.+.+..+. ....-+
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~-----~p~~Vi 79 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRR-----KPYSIV 79 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH-----CCCCEE
T ss_conf 999889899899999999999967985344885575654256999870589987262426507899983-----898489
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC--CCHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 2012100111122057899998878888763038846206--4125566303886899844888899998
Q gi|254780457|r 81 SSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTIIFPDARIKFYVTASLDIRARRR 148 (217)
Q Consensus 81 r~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EG--RDigTvVfPdA~~KifL~As~e~RA~RR 148 (217)
.-+||.+. .|.|-+.|+++.- .|.+-++ |-+. | ..+=|.+|.+...+...+
T Consensus 80 llDEIeKa------~~~V~~~LL~ild------~g~~~d~~g~~v~---~--~n~i~i~Tsn~g~~~~~~ 132 (168)
T pfam07724 80 LIDEIEKA------HPGVQNDLLQILE------GGTLTDKQGRKVD---F--RNTLFIMTGNFGSEKISD 132 (168)
T ss_pred EEHHHHHH------CHHHHHHHHHHCC------CCCEECCCCCEEE---C--CCEEEEECCCCCCHHHHH
T ss_conf 86577665------8999999998705------8706369996784---4--647999768737299998
No 323
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.011 Score=36.95 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=22.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8189866687789678999999981783
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFH 35 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~ 35 (217)
.=+++|=|+|||||||+++.|..-+..+
T Consensus 33 GEilgivGeSGsGKSTl~~~ilgll~~~ 60 (327)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMGLIDYP 60 (327)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 9999999999878999999997488989
No 324
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.51 E-value=0.016 Score=36.04 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=24.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 9866687789678999999981783562
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
|=+-||+|+||||+++.+|+.++..|..
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~~~ 29 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDFRR 29 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 8789899876999999999995998168
No 325
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.51 E-value=0.011 Score=37.03 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=.++|.||.||||||+.+.++-=+
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9899998899988999999953767
No 326
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.012 Score=36.77 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+++|=||+||||||+++.|+--+
T Consensus 31 Ge~~~lvG~nGsGKSTL~~~l~Gl~ 55 (513)
T PRK13549 31 GEIVSLCGENGAGKSTLMKVLSGVY 55 (513)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9799998999972999999995678
No 327
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.011 Score=37.03 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=24.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+- +..-++|.+
T Consensus 45 GE~~~llGpsGsGKSTllr~i~G---l~~p~~G~I 76 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAG---FEQPSAGQI 76 (377)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCEEE
T ss_conf 98999999998489999999976---999986599
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.48 E-value=0.01 Score=37.15 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 189866687789678999999981
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
=.|+|=||.||||||+.+.|+-.+
T Consensus 28 e~vgLVG~NGsGKSTLlklL~G~~ 51 (638)
T PRK10636 28 QKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 899998899988999999980899
No 329
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.48 E-value=0.011 Score=36.92 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=.++|=||+||||||+.+.|+-.+
T Consensus 29 Ge~vgLVG~NGsGKSTLl~iL~G~~ 53 (632)
T PRK11147 29 NERVCLVGRNGAGKSTLMKILSGEV 53 (632)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999987999999983899
No 330
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.48 E-value=0.013 Score=36.52 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+.||=||+||||||+-+.|+..+
T Consensus 22 ~~itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8889999899999999999986304
No 331
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=95.47 E-value=0.012 Score=36.81 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89866687789678999999
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIA 29 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA 29 (217)
|+=.-|||||||||+=.++.
T Consensus 33 iViltGPSGSGKTTLLtLiG 52 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79843788984688999887
No 332
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.47 E-value=0.015 Score=36.23 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 189866687789678999999981
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
|+|||-|--||||||+|-+||+.|
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 969996599765899999999999
No 333
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=95.46 E-value=0.018 Score=35.64 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=34.4
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE-----CCHHHHH
Q ss_conf 655588189866687789678999999981783562-----0289999
Q gi|254780457|r 3 RLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLD-----TGLIYRA 45 (217)
Q Consensus 3 ~~~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ld-----tG~~YR~ 45 (217)
+.+..+++|..=|-+|+|||++|+.|+..|+|.-+. -|.+=|.
T Consensus 8 ~~~~~klvIvmVGLPARGKS~ia~kl~RYL~W~g~~~kvFn~G~yRR~ 55 (223)
T pfam01591 8 NFTNSKTMIVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRS 55 (223)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf 556898899998999998899999999998656998058426378876
No 334
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.44 E-value=0.011 Score=36.94 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=+++|=|+|||||||+++.|..-+.
T Consensus 42 GEilgivGeSGsGKSTl~~~i~gll~ 67 (330)
T PRK09473 42 GETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999986898779999999976888
No 335
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.012 Score=36.62 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=26.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 8986668778967899999998178356202
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.+=+-||+|+|||.+||.+|..++++|+.--
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~ 308 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVK 308 (494)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf 6999889997589999998754498248843
No 336
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.43 E-value=0.011 Score=36.98 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 86668778967899999998178356
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~l 37 (217)
=..||.|+||+|+|+.+|+.|++..-
T Consensus 43 LF~GprGtGKTT~ArilAkaLnC~~~ 68 (462)
T PRK06305 43 LFSGIRGTGKTTLARIFAKALNCQNP 68 (462)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 30389985999999999999679999
No 337
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.43 E-value=0.013 Score=36.53 Aligned_cols=30 Identities=43% Similarity=0.591 Sum_probs=24.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 189866687789678999999981783562028
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
=++||=|||||||||+--++| ||..=.+|.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIA---GF~~P~~G~ 55 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIA---GFETPASGE 55 (231)
T ss_pred CEEEEECCCCCCHHHHHHHHH---HCCCCCCCE
T ss_conf 579997788865788999987---424778745
No 338
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.42 E-value=0.013 Score=36.48 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+++|=||+||||||+-+.|+--+
T Consensus 30 GE~~~iiGpNGaGKSTLlk~i~Gll 54 (262)
T PRK09984 30 GEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999899960999999997567
No 339
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.42 E-value=0.015 Score=36.17 Aligned_cols=36 Identities=36% Similarity=0.389 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC----CCEEECCHHHHH
Q ss_conf 898666877896789999999817----835620289999
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG----FHYLDTGLIYRA 45 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~----~~~ldtG~~YR~ 45 (217)
-|-|-||+|+||+.+|-.+|+.|| |.-++-+-+|..
T Consensus 67 giLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~ 106 (450)
T COG1224 67 GILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSL 106 (450)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEE
T ss_conf 7999789997688999999998589998215013322331
No 340
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.013 Score=36.48 Aligned_cols=23 Identities=39% Similarity=0.353 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 81898666877896789999999
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~ 30 (217)
.=+.+|=||+||||||+.+.||-
T Consensus 24 g~i~~l~GpsGaGKTTLl~~iaG 46 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINLISG 46 (352)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999629999999976
No 341
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.014 Score=36.39 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=+++|=||+||||||+-+.|+-.+.
T Consensus 33 Gei~~llG~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 84999998999988999999837878
No 342
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.41 E-value=0.015 Score=36.18 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=25.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||.||||||+-|.|+ |+...++|.+
T Consensus 28 Gei~~l~G~NGaGKTTLlk~i~---Gl~~p~~G~I 59 (206)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLLA---GLLPPAAGTI 59 (206)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCCCEEE
T ss_conf 9499998999998999999995---8878885189
No 343
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.014 Score=36.39 Aligned_cols=103 Identities=11% Similarity=0.145 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHCCCC-------EEEEEECCHHHHHHHHHHHHHHHHCCC-CHHHHH
Q ss_conf 578999988788887630-38846206412556630388-------689984488889999866776521113-569999
Q gi|254780457|r 95 IDSVRDALIDIQRSFAQN-KLGVILDGRDIGTIIFPDAR-------IKFYVTASLDIRARRRYNEMVSRGEKV-DYVKIL 165 (217)
Q Consensus 95 ~p~VR~~l~~~Qr~~~~~-~~g~V~EGRDigTvVfPdA~-------~KifL~As~e~RA~RR~~el~~~g~~~-~~~ev~ 165 (217)
.|.-+..+....+++.++ ...+|+=-.|+.-+ ..-|| =|+....++++= ......+...|-.. ...++.
T Consensus 173 Dp~~~~~i~~ll~~l~~e~g~TiilvtHd~~~v-~~~aDrvivl~~G~iv~~G~p~ev-f~~~~~l~~~~l~~P~~~~l~ 250 (285)
T PRK13636 173 DPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV-PLYCDNVFVMKEGRVILQGNPKEV-FAEKEMLRKVNLRLPRIGHLM 250 (285)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHCCEEEEEECCEEEEECCHHHH-HCCHHHHHHCCCCCCCHHHHH
T ss_conf 999999999999999984498999994889999-996999999989989998699999-669999997799999699999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999856102367578537997399977898989999999999998740
Q gi|254780457|r 166 EDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLD 215 (217)
Q Consensus 166 ~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~ 215 (217)
..++++|. +.+|...+|++|..+.+.++..+-+|
T Consensus 251 ~~L~~~~g----------------~~~~~~~lt~~e~~~~l~~~~~~~~~ 284 (285)
T PRK13636 251 EILKEKDG----------------FVFDELDLTISQARKTLNSWKNKIFN 284 (285)
T ss_pred HHHHHHCC----------------CCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99988309----------------99899977799999999999985127
No 344
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.37 E-value=0.013 Score=36.56 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1898666877896789999999817
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
=++++=||+||||||+.|.|+-.+.
T Consensus 30 e~~~LvG~NGaGKSTL~k~l~G~l~ 54 (490)
T PRK10938 30 DSWAFVGSNGSGKSALARALAGELP 54 (490)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8999997999779999999956998
No 345
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.37 E-value=0.015 Score=36.17 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=25.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
+.=+++|=||.||||||+.|.|+- +..-++|.+
T Consensus 24 ~Ge~~~liGpNGaGKSTllk~i~G---l~~p~~G~i 56 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILG---LLKPTSGSI 56 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---CCCCCCCEE
T ss_conf 998999999999869999999976---878897589
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.36 E-value=0.014 Score=36.42 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=.|+|=||.||||||+.|.|+-.+
T Consensus 345 Ge~ialvG~NGsGKSTLlk~l~G~l 369 (632)
T PRK11147 345 GDKIALIGPNGCGKTTLLKLMLGQL 369 (632)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8779998898842779999860666
No 347
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.0071 Score=38.10 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 88189866687789678999999981783562028
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
+.=+++|=||+||||||+.+.|+-- .--++|.
T Consensus 29 ~Ge~~~lvG~nGaGKSTL~~~l~G~---~~p~~G~ 60 (501)
T PRK11288 29 AGQVHALMGENGAGKSTLLKILSGN---YQPDAGS 60 (501)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC---CCCCCEE
T ss_conf 9819999899998199999998479---9997169
No 348
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.31 E-value=0.015 Score=36.11 Aligned_cols=31 Identities=39% Similarity=0.423 Sum_probs=23.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 1898666877896789999999817835620289
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
=+++|=||+||||||++|.|+- +.--++|.+
T Consensus 311 Ei~gi~G~nGsGKsTL~k~l~G---l~~p~~G~V 341 (520)
T TIGR03269 311 EIFGIVGTSGAGKTTLSKIIAG---VLEPTSGEV 341 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHHC---CCCCCCCEE
T ss_conf 6899987888878999999948---878987479
No 349
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.31 E-value=0.016 Score=36.01 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=24.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||+||||||+.+.++--+. -++|.
T Consensus 25 Ge~~~liG~nGsGKTTLl~~i~G~~~---~~~G~ 55 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGE 55 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC---CCCCE
T ss_conf 97999998999889999999957989---98728
No 350
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.31 E-value=0.015 Score=36.20 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1898666877896789999999
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~ 30 (217)
=+++|=||+||||||+.+.|+-
T Consensus 36 ei~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 1999998999519999999857
No 351
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.015 Score=36.15 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=24.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+--+ -.++|.+
T Consensus 26 Gei~~iiGpnGaGKSTl~~~i~Gl~---~p~~G~I 57 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE---RPDSGEI 57 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC---CCCCEEE
T ss_conf 9899999999973999999997599---9897089
No 352
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.31 E-value=0.012 Score=36.68 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
+.=|+++=|||||||||+--..+-.|.-.|--||.|
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~ 62 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 784799877888657889999986206676245689
No 353
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.30 E-value=0.021 Score=35.32 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 89866687789678999999981783562
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
-+-+-||+|+|||++++.+|+.++++|..
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 77877989877799999999983898189
No 354
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.29 E-value=0.014 Score=36.36 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=+++|=|++||||||+++.|..-+.
T Consensus 42 GE~vaLvGeSGSGKSTl~~~l~gll~ 67 (623)
T PRK10261 42 GETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999998999789999999977987
No 355
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.27 E-value=0.017 Score=35.88 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=24.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||.||||||+.|.|+--+ --++|.+
T Consensus 30 Gei~~LiGpNGaGKSTLlk~I~Gl~---~p~~G~I 61 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLV---APDEGVI 61 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCCCCEE
T ss_conf 9799999899988999999996688---8986089
No 356
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.27 E-value=0.015 Score=36.08 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 81898666877896789999999
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~ 30 (217)
.=+++|=||.||||||+++.|+-
T Consensus 286 GE~~~i~G~nGsGKSTLl~~l~G 308 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98899986788879999999808
No 357
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=95.26 E-value=0.013 Score=36.56 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=23.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 86668778967899999998178356202
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
=.-||.|+||+|+|+.+|+.|++.+-.+|
T Consensus 42 LF~GprGtGKts~Ari~AkaLnC~~~~~~ 70 (563)
T PRK06674 42 LFSGPRGTGKTSIAKVFAKAVNCEHAPVA 70 (563)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 31289986899999999998579999998
No 358
>PRK13544 consensus
Probab=95.26 E-value=0.017 Score=35.84 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=24.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 8818986668778967899999998178356202
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
+.=++++=||.||||||+-+.||--+ ..++|
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~Gl~---~p~~G 56 (208)
T PRK13544 26 QNSLTLVIGNNGSGKTSLLRLLAGLI---PITHG 56 (208)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC---CCCCC
T ss_conf 99499999999998999999995880---68974
No 359
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.26 E-value=0.015 Score=36.11 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 81898666877896789999999
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~ 30 (217)
.=+|+|=||.||||||+.+.||-
T Consensus 33 Ge~vgLvG~NGaGKSTLlriLaG 55 (556)
T PRK11819 33 GAKIGVLGLNGAGKSTLLRIMAG 55 (556)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999719999999847
No 360
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.013 Score=36.53 Aligned_cols=29 Identities=21% Similarity=0.046 Sum_probs=24.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 86668778967899999998178356202
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
=..||.|+||+|+|+.+|+.|+...-.+|
T Consensus 42 LFsGprG~GKTt~ArilAk~LnC~~~~~~ 70 (560)
T PRK06647 42 IFSGPRGVGKTSSARAFARCLNCVNGPTI 70 (560)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 63289987899999999999659999998
No 361
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.24 E-value=0.017 Score=35.82 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=24.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||.||||||+.|.|+--+ ..++|.+
T Consensus 28 Gei~~liGpNGaGKSTLlk~i~Gl~---~p~~G~I 59 (257)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGEL---PPSSGEV 59 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCCCCEE
T ss_conf 9899999999987999999985675---7787569
No 362
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.017 Score=35.85 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 81898666877896789999999
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~ 30 (217)
.=+++|=||+||||||+.+.|+-
T Consensus 33 Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CEEEEEECCCCCCHHHHHHHHHC
T ss_conf 83999999999988999999837
No 363
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.22 E-value=0.016 Score=36.00 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=23.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+.+|=|||||||||+.+.++ ++.--++|.+
T Consensus 31 Gei~giIG~SGaGKSTLlr~i~---gL~~ptsG~I 62 (343)
T PRK11153 31 GQIYGVIGASGAGKSTLIRCVN---LLERPTSGSV 62 (343)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 9899999999986999999996---5999996399
No 364
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.20 E-value=0.018 Score=35.70 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+|+|=||.||||||+.|.|+-.+ -.++|.
T Consensus 350 Ge~iaivG~NGsGKSTLlk~l~G~~---~p~~G~ 380 (556)
T PRK11819 350 GGIVGIIGPNGAGKSTLFKMITGQE---QPDSGT 380 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCCCCE
T ss_conf 8247898898775889999983865---688855
No 365
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.20 E-value=0.019 Score=35.59 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 898666877896789999999817
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
+|+.=||+|+||||+.-+||.++-
T Consensus 196 vi~lvGPTGVGKTTTiAKLAa~~~ 219 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 799977888757889999999999
No 366
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.19 E-value=0.026 Score=34.73 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEC
Q ss_conf 898666877896789999999817835620
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDT 39 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldt 39 (217)
-|-.=||+|||||-+|+.||+.|+.+|.-.
T Consensus 111 NILliGPTG~GKTlla~tLAk~l~vPF~ia 140 (411)
T PRK05342 111 NILLIGPTGSGKTLLAQTLARILNVPFAIA 140 (411)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 389989999778899999999869998998
No 367
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=95.18 E-value=0.015 Score=36.19 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 898666877896789999999817
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
|++|=|+++|||||+-..|++.|.
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~ 24 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALK 24 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 937896258867899999999997
No 368
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.17 E-value=0.025 Score=34.82 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 89866687789678999999981783562
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
-+-..||+|.||+|+|..+|+.+|-++--
T Consensus 53 H~Ll~GPPGlGKTTLA~iiA~E~~~~~~~ 81 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 05765889988999999999986888156
No 369
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.14 E-value=0.017 Score=35.84 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=22.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEC
Q ss_conf 8666877896789999999817835620
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHYLDT 39 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ldt 39 (217)
-..||.|+||+|+|+.+|+.|++.--..
T Consensus 42 LFsGPrGvGKTTlArifAkaLnC~~~~~ 69 (613)
T PRK05896 42 IFSGPRGIGKTSIAKIFAKAINCLNPKD 69 (613)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 7558998488999999999966999999
No 370
>pfam00931 NB-ARC NB-ARC domain.
Probab=95.10 E-value=0.017 Score=35.82 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
--+|+|=|++|.||||+|+.+-.+.
T Consensus 19 ~~vI~I~G~gGiGKTtLA~~v~~~~ 43 (285)
T pfam00931 19 LGVVGIVGMGGVGKTTLAKQIYNDD 43 (285)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCH
T ss_conf 5399988999563999999997165
No 371
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=95.10 E-value=0.017 Score=35.76 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=25.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC----CCEEECC
Q ss_conf 1898666877896789999999817----8356202
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYG----FHYLDTG 40 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~----~~~ldtG 40 (217)
-.+|+=|||||||||+..+|-.-|. --.++-|
T Consensus 412 ~t~AlVG~SGsGKSTii~LL~RfYdP~~G~I~i~Dg 447 (1467)
T PTZ00265 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447 (1467)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 779986688875667999996326889986997899
No 372
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.018 Score=35.63 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88189866687789678999999981
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
+.=+++|-||+||||||+++.|+--+
T Consensus 287 ~GEi~gi~G~nGsGKsTLl~~L~Gl~ 312 (513)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGAY 312 (513)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88489974798865899999983898
No 373
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=95.09 E-value=0.017 Score=35.78 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 8986668778967899999998178
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
.|||=||+||||||+..+|-.-|..
T Consensus 1197 kVaiVGrSGsGKSTii~lL~Rfydi 1221 (1467)
T PTZ00265 1197 TTAIVGETGSGKSTFMNLLLRFYDL 1221 (1467)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999899998399999999977632
No 374
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.09 E-value=0.018 Score=35.74 Aligned_cols=30 Identities=40% Similarity=0.485 Sum_probs=24.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 189866687789678999999981783562028
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
=++||=||||+||||+=-+|| ||..=-+|.
T Consensus 25 e~VAi~GpSGAGKSTLLnLiA---GF~~PasG~ 54 (213)
T TIGR01277 25 ERVAILGPSGAGKSTLLNLIA---GFLEPASGE 54 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHH---HHCCCCCEE
T ss_conf 768887589862788987786---404776405
No 375
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=95.09 E-value=0.017 Score=35.86 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1898666877896789999999817
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
=.||+=||||.||||+=.+|=.-|.
T Consensus 367 EtvAlVGPSGAGKSTlf~LLLRFYD 391 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 6588766887627999999986048
No 376
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.02 Score=35.44 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+++|=||.||||||+.|.|+--+ .-++|
T Consensus 28 Gei~~liGpNGaGKSTLlk~i~Gl~---~p~sG 57 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFARLL---TPQSG 57 (255)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC---CCCCC
T ss_conf 9799999999981999999997598---88864
No 377
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=95.08 E-value=0.015 Score=36.18 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.6
Q ss_pred EECCCCCCHHHHHHHHHHHHC
Q ss_conf 666877896789999999817
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~ 33 (217)
+-||||+||||+=|+|...+.
T Consensus 33 LtG~SGAGKttLLKLl~~~~~ 53 (215)
T TIGR02673 33 LTGPSGAGKTTLLKLLYGALT 53 (215)
T ss_pred EECCCCCCHHHHHHHHHHHCC
T ss_conf 872778617899999985269
No 378
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.05 E-value=0.017 Score=35.80 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=22.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 8666877896789999999817835
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
-..||.|+||+|+|+.+|+.|++..
T Consensus 40 LFsGPrGvGKTt~ArifAkaLnC~~ 64 (523)
T PRK08451 40 LFSGLRGSGKTSSARIFSRALVCEQ 64 (523)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 7578998688999999999975999
No 379
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.05 E-value=0.022 Score=35.14 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=26.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
+.=++++=||+||||||+.+.|+ |+..-++|.+
T Consensus 25 ~Gei~~lvG~nGaGKSTl~~~i~---Gl~~p~~G~i 57 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILS---GLYKPDSGEI 57 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCCCCCCEE
T ss_conf 99899999889989999999995---7768985789
No 380
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=95.03 E-value=0.019 Score=35.47 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 18986668778967899999998
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALE 31 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~ 31 (217)
=+++|=||.||||||+.|.|+--
T Consensus 24 e~v~iiGpNGaGKSTLlk~i~Gl 46 (245)
T PRK03695 24 EILHLVGPNGAGKSTLLARMAGL 46 (245)
T ss_pred CEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89999978994199999998466
No 381
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.03 E-value=0.021 Score=35.32 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=23.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||+||||||+.+.|+--+. -++|.
T Consensus 24 Gei~~liG~nGsGKSTL~~~l~Gl~~---~~~G~ 54 (491)
T PRK10982 24 HSIHALMGENGAGKSTLLKCLFGIYQ---KDSGS 54 (491)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC---CCCEE
T ss_conf 96999989999819999999956988---99659
No 382
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.03 E-value=0.02 Score=35.38 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=22.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 189866687789678999999981783562028
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
=+++|=||+||||||+.+.|+--+ -.++|.
T Consensus 31 ei~~liG~nGaGKSTL~~~l~G~~---~~~~G~ 60 (501)
T PRK10762 31 RVMALVGENGAGKSTLMKVLTGIY---TRDAGT 60 (501)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC---CCCCEE
T ss_conf 699998999982999999995799---898449
No 383
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.02 E-value=0.022 Score=35.16 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=24.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||.||||||+-|.|+- +.--++|.
T Consensus 37 Ge~~~l~GpNGaGKTTLlr~l~G---l~~p~~G~ 67 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAG---LLHVESGQ 67 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CCCCCCEE
T ss_conf 98999999999879999999976---97788419
No 384
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.02 E-value=0.029 Score=34.44 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=27.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 558818986668778967899999998178
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
-....||...|+=|+||||.+|.+++.||.
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 789988999778768859999999997499
No 385
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=95.01 E-value=0.02 Score=35.35 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+++|=||+||||||+.+.|+- +..-++|
T Consensus 34 Ge~v~i~G~nGsGKSTll~~l~g---l~~p~~G 63 (648)
T PRK10535 34 GEMVAIVGASGSGKSTLMNILGC---LDKPTSG 63 (648)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCE
T ss_conf 98999999999629999999956---9999966
No 386
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.01 E-value=0.021 Score=35.31 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=25.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH
Q ss_conf 818986668778967899999998178356202899
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIY 43 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~Y 43 (217)
.=+++|=||.||||||+.+.|+- +.--++|.++
T Consensus 50 GEivgllG~NGaGKSTLlk~I~G---l~~P~~G~I~ 82 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGG---SLSPTVGKVD 82 (264)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCCEEE
T ss_conf 98999998998619999999967---9888874799
No 387
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=94.99 E-value=0.017 Score=35.76 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 86668778967899999998178356202
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
-..||.|+||+|+|+.+|+.|++..-..|
T Consensus 41 LF~GP~GtGKts~ArifAkaLnC~~~~~~ 69 (557)
T PRK07270 41 LFSGPRGTGKTSAAKIFAKAMNCPNQVDG 69 (557)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 21089986899999999999579998999
No 388
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.97 E-value=0.02 Score=35.36 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 8666877896789999999817835
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
-..||.|+||+|+|+.+|+.||+..
T Consensus 42 lf~G~rG~GKtt~ari~ak~lnc~~ 66 (643)
T PRK07994 42 LFSGTRGVGKTSIARLLAKGLNCET 66 (643)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 7458998888899999999967999
No 389
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=94.96 E-value=0.023 Score=35.04 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=24.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||.||||||+.+.|+--+ -.++|.+
T Consensus 29 Gei~~liGpNGaGKSTLl~~i~Gl~---~~~~G~I 60 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGIV---PRDAGNI 60 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCCCCEE
T ss_conf 9799998899986999999996788---8887627
No 390
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.96 E-value=0.018 Score=35.66 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=23.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.=+++|=||.||||||+.|.|+--+ .-++|
T Consensus 33 Ge~~~iiGpNGaGKSTLlk~i~Gll---~p~~G 62 (265)
T PRK10253 33 GHFTAIIGPNGCGKSTLLRTLSRLM---TPAHG 62 (265)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC---CCCCE
T ss_conf 9799999998839999999997498---88852
No 391
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.94 E-value=0.024 Score=34.88 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=25.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 1898666877896789999999817835620289
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
=+++|=||.||||||+.+.|+ |+...++|.+
T Consensus 27 ei~gliG~nGaGKSTL~~~i~---Gl~~p~~G~I 57 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLIS---GFLRPTSGSV 57 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCCEEE
T ss_conf 899999899973999999996---7987883189
No 392
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.94 E-value=0.023 Score=35.01 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=24.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||.||||||+.+.|+- +...++|.+
T Consensus 31 Gei~~liG~NGaGKSTLl~~i~G---~~~~~~G~I 62 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCG---DPRATSGRI 62 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CCCCCCEEE
T ss_conf 97999987999759999999967---998896289
No 393
>KOG0743 consensus
Probab=94.93 E-value=0.021 Score=35.27 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 66687789678999999981783562
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
.=||+|+||||+=-++|..|+|.-.|
T Consensus 240 LYGPPGTGKSS~IaAmAn~L~ydIyd 265 (457)
T KOG0743 240 LYGPPGTGKSSFIAAMANYLNYDIYD 265 (457)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 04799998889999997205873677
No 394
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=94.93 E-value=0.34 Score=28.03 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=89.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE-EECCHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCC---C--CCCCCCCC
Q ss_conf 898666877896789999999817835-62028999998523---210111014655333321011---1--24444443
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHY-LDTGLIYRAVAKNI---LDAGISLDDEKMAIKIAQNIV---L--SNLDKAQL 80 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~-ldtG~~YR~~a~~~---~~~~~~~~~~~~~~~~~~~i~---~--~~~~~~~l 80 (217)
-|.+=|||||||=|+=.....+|.-.. +- --=|.+|--+ -++...++.++|........+ + +++.=- |
T Consensus 3 li~vvGPSGaGKDtLl~~AR~~l~~~~r~~--F~rRvITR~a~AggEnH~Als~~EF~~~~~~G~FAl~W~AHGL~YG-i 79 (183)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGDPRVH--FVRRVITRPADAGGENHDALSTEEFDAREDGGAFALSWQAHGLSYG-I 79 (183)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCEE--EEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC-C
T ss_conf 789970778867789999999704899658--8312774375224667640477899999718981898613674357-8
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCC-----CEE-EEEECCHHHHHHHHHHHHHH
Q ss_conf 201210011112205789999887888876303884620641255663038-----868-99844888899998667765
Q gi|254780457|r 81 SSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDA-----RIK-FYVTASLDIRARRRYNEMVS 154 (217)
Q Consensus 81 r~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA-----~~K-ifL~As~e~RA~RR~~el~~ 154 (217)
--||+ +.+.+ ..-+|+.|= --++|.| .|+ +.+||+++|=|+| |.+
T Consensus 80 -P~eid--------------------~wL~~-G~~Vv~NGS---Ra~Lp~ar~rYp~L~~V~Ita~~dVLa~R----L~~ 130 (183)
T TIGR02322 80 -PVEID--------------------QWLEA-GDVVVVNGS---RAVLPEARQRYPNLLVVNITASPDVLAQR----LAA 130 (183)
T ss_pred -CHHHH--------------------HHHHC-CCEEEEECH---HHHHHHHHHHHHCCEEEEEECCHHHHHHH----HHH
T ss_conf -30378--------------------78754-998999752---88999998743246027874581289999----997
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 2111356999999999856102367578537997399977898989999999999998
Q gi|254780457|r 155 RGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 155 ~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~ 212 (217)
+|.+ +. .+|.+|=.+-.+-.-+-|..+.|...|||+-- +++..+.++.+|.+
T Consensus 131 RgRE-~~----~~I~~RL~Rs~~~~~dll~~~~dv~~i~NsG~-~~~ag~~L~~ll~~ 182 (183)
T TIGR02322 131 RGRE-SA----EEIEERLARSARFAGDLLLEPADVTTIDNSGS-LEVAGETLLRLLRK 182 (183)
T ss_pred HCCC-CH----HHHHHHHHHHHHHCCHHHCCCCCEEEEECCHH-HHHHHHHHHHHHHC
T ss_conf 5898-98----89999988775311022005987279846802-78999999999853
No 395
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=94.92 E-value=0.032 Score=34.17 Aligned_cols=42 Identities=19% Similarity=0.089 Sum_probs=29.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEE----ECCHHHHHHHHH
Q ss_conf 818986668778967899999998178356----202899999852
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYL----DTGLIYRAVAKN 49 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~l----dtG~~YR~~a~~ 49 (217)
+-||+.=||.|+||||..-+||.+|...-. =|---||.-|..
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~e 46 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIE 46 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 9699998999998899999999999977992899975877688999
No 396
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.91 E-value=0.022 Score=35.14 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 98666877896789999999817835
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
.-..||-|+||+|+|+.+|+.||+.-
T Consensus 41 ylf~G~rGvGKTt~Ari~Ak~lNC~~ 66 (704)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSLNCEN 66 (704)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 75027898788899999999967999
No 397
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=94.89 E-value=0.039 Score=33.70 Aligned_cols=129 Identities=23% Similarity=0.261 Sum_probs=66.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE--CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
Q ss_conf 89866687789678999999981783562--0289999985232101110146553333210111244444432012100
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD--TGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIAN 87 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld--tG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~ 87 (217)
+..|=||.|+|||.+|-.||+++|++-++ +=-.|+-++- -.+....++ .+-...+.+.+.. |..
T Consensus 3 l~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~Q~y~el~i---gs~rp~~~E---l~gT~RiYL~~R~---l~~----- 68 (232)
T pfam01745 3 LYLIWGATCTGKTAEAIALAKETGWPVIVLDRVQCCSQLAT---GSGRPLPAE---LQGTRRIYLDNRP---LSE----- 68 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHCCCC---CCCCCCHHH---HCCCCEEEECCCC---CCC-----
T ss_conf 68997887777169999999995997796203443001136---778999799---6575269861673---434-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH------HHCCCC----EEEEEEC---CHHHHHHHHHHHHHH
Q ss_conf 111122057899998878888763038846206412556------630388----6899844---888899998667765
Q gi|254780457|r 88 VASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTI------IFPDAR----IKFYVTA---SLDIRARRRYNEMVS 154 (217)
Q Consensus 88 ~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTv------VfPdA~----~KifL~A---s~e~RA~RR~~el~~ 154 (217)
-.|+....-+. |+..--++.. .+|+|+||--|.-. -+=+++ ++.+--. ..-.||+||..|+..
T Consensus 69 --Gii~a~eA~~~-Li~~V~~~~~-~~glILEGGSISLl~~ma~~~~w~~~f~w~v~r~~l~d~~~f~~ra~~Rv~~ML~ 144 (232)
T pfam01745 69 --GIIDAEEAHDR-LIAEVTSHKD-EGGVILEGGSISLLKRMAQSPYWNAGFPWHVKRMRLPDRDVFLAQAKARVRQMLR 144 (232)
T ss_pred --CCCCHHHHHHH-HHHHHHCCCC-CCCEEEECCHHHHHHHHHHCHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf --66488999999-9999960466-7866872750999999975734148964899997479878999999999998628
Q ss_pred HH
Q ss_conf 21
Q gi|254780457|r 155 RG 156 (217)
Q Consensus 155 ~g 156 (217)
-.
T Consensus 145 p~ 146 (232)
T pfam01745 145 PD 146 (232)
T ss_pred CC
T ss_conf 89
No 398
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.86 E-value=0.011 Score=36.85 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=25.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH
Q ss_conf 18986668778967899999998178356202899
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIY 43 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~Y 43 (217)
=+++|=||.|+||||+.+.|+ |+..-++|.++
T Consensus 27 ei~~liGpNGaGKSTL~~~i~---Gl~~p~~G~I~ 58 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLM---GLLPVKSGSIR 58 (230)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCEEEE
T ss_conf 799999999940999999997---79999954999
No 399
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.85 E-value=0.025 Score=34.80 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=24.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 1898666877896789999999817835620289
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
=+++|=||.||||||+.+.|+ |+..-++|.+
T Consensus 32 ei~~liGpnGaGKSTL~~~i~---Gl~~p~~G~I 62 (255)
T PRK11300 32 EVVSLIGPNGAGKTTVFNCLT---GFYKPTGGTI 62 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCCEEE
T ss_conf 799999899964999999996---7988986089
No 400
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.84 E-value=0.016 Score=35.91 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=25.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+.+.|+--+ .-++|.+
T Consensus 26 GEi~~liG~nGaGKSTll~~l~G~~---~p~~G~I 57 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR---PPASGEI 57 (182)
T ss_pred CCEEEEECCCCCCCCHHHHHHCCCC---CCCCCEE
T ss_conf 9699998889999263778766986---7887759
No 401
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.82 E-value=0.021 Score=35.24 Aligned_cols=43 Identities=28% Similarity=0.246 Sum_probs=29.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCE------EECCHHHHHHHHHHH
Q ss_conf 1898666877896789999999817835------620289999985232
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHY------LDTGLIYRAVAKNIL 51 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~------ldtG~~YR~~a~~~~ 51 (217)
=+|+.=||.|+||||+.-+||.++-+.+ |=|=--||.-|..-+
T Consensus 211 ~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQL 259 (412)
T PRK05703 211 GVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQL 259 (412)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
T ss_conf 3699988888756769999999999972998179998376777799999
No 402
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=94.82 E-value=0.012 Score=36.72 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 986668778967899999998178
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
|-|-||+|+||||+.+++++.|.-
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~ 25 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKS 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 899789998899999999999986
No 403
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=94.81 E-value=0.37 Score=27.85 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=27.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-------CCEEECCHHHHHHH
Q ss_conf 98666877896789999999817-------83562028999998
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYG-------FHYLDTGLIYRAVA 47 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~-------~~~ldtG~~YR~~a 47 (217)
+-|=||+|||||.+.+.++..+. ..|++...+...+.
T Consensus 37 l~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~ 80 (219)
T pfam00308 37 LFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFV 80 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH
T ss_conf 69988999988899999999999849998288843999999889
No 404
>KOG0730 consensus
Probab=94.79 E-value=0.023 Score=35.02 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
Q ss_conf 98666877896789999999817835620
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDT 39 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldt 39 (217)
|-.-||+|+||+|+||.+|..-+.+|++.
T Consensus 471 VLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730 471 VLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 77778998624789999864635872641
No 405
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.78 E-value=0.027 Score=34.66 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=24.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||.||||||+.+.|+--+ --++|.+
T Consensus 27 Gei~~liGpNGaGKSTLlk~l~Gl~---~p~~G~I 58 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGLL---RPQKGAV 58 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCCCEEE
T ss_conf 9799999999980999999996688---8886079
No 406
>KOG4238 consensus
Probab=94.78 E-value=0.078 Score=31.86 Aligned_cols=165 Identities=12% Similarity=0.188 Sum_probs=83.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC-CCC-CHHHH
Q ss_conf 1898666877896789999999817835620289999985232101110146553333210111244444-432-01210
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKA-QLS-SNAIA 86 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~lr-~~~I~ 86 (217)
-.|=..|.||.||+|++-.|-..|...-+- ..+.+ -.++-.-+.+|+-|...|-. ++| -.||.
T Consensus 51 ctvw~tglsgagkttis~ale~~l~~~gip-------------cy~ld--gdnirhgl~knlgfs~edreenirriaeva 115 (627)
T KOG4238 51 CTVWLTGLSGAGKTTISFALEEYLVSHGIP-------------CYSLD--GDNIRHGLNKNLGFSPEDREENIRRIAEVA 115 (627)
T ss_pred EEEEEEECCCCCCCEEEHHHHHHHHHCCCC-------------CCCCC--CCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 158743047788524207899999865985-------------10347--602666554126988355788899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCEE---EEEECCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 011112205789999887888876303884620641255663038868---99844888899998667765211135699
Q gi|254780457|r 87 NVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIK---FYVTASLDIRARRRYNEMVSRGEKVDYVK 163 (217)
Q Consensus 87 ~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~K---ifL~As~e~RA~RR~~el~~~g~~~~~~e 163 (217)
++-.. |....+-.++-.+|..- .-...|---|.++ +|++|.+++--+|-.++|-++..-.
T Consensus 116 klfad-aglvcitsfispf~~dr------------~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkarag---- 178 (627)
T KOG4238 116 KLFAD-AGLVCITSFISPFAKDR------------ENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAG---- 178 (627)
T ss_pred HHHHC-CCCEEHHHHCCHHHHHH------------HHHHHHHCCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHCC----
T ss_conf 98735-77142103348344303------------55665410269862999824705665303768887664225----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999998561023675785379973-999778989899999999999987
Q gi|254780457|r 164 ILEDLRNRDNQDRNRSYCPLVRDKDA-YFFDTSEMDIGTMCKVAKGLIDTK 213 (217)
Q Consensus 164 v~~~i~~RD~~D~~R~~sPL~~a~DA-i~IDTs~lsi~ev~~~i~~~I~~k 213 (217)
+|+-=.-.|+ ..-+++.+ ++++|..-+..+++.++.++..++
T Consensus 179 ---ei~gftgids-----~ye~pe~~e~vl~t~~~~v~~cvqqvve~lq~~ 221 (627)
T KOG4238 179 ---EIKGFTGIDS-----DYEKPETPERVLKTNLSTVSDCVQQVVELLQEQ 221 (627)
T ss_pred ---CCCCCCCCCC-----CCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf ---3025445665-----667988735622168741899999999999866
No 407
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=94.77 E-value=0.017 Score=35.84 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 986668778967899999998
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALE 31 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~ 31 (217)
+=+=|||||||||+=|+|...
T Consensus 32 ~fL~GHSGaGKST~lkLi~~~ 52 (216)
T TIGR00960 32 VFLVGHSGAGKSTLLKLILGI 52 (216)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 998568886078999999852
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=94.76 E-value=0.021 Score=35.30 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHCCCEEECCH
Q ss_conf 8986668778967899-9999981783562028
Q gi|254780457|r 10 IIAIDGTAAAGKGVLS-RFIALEYGFHYLDTGL 41 (217)
Q Consensus 10 iIaIDGpagsGKsT~a-k~lA~~l~~~~ldtG~ 41 (217)
++.|-|+|||||||+| --|...=.-.|++|=.
T Consensus 28 lvViTGvSGSGKSSLAFDTlyAEGQRrY~EslS 60 (944)
T PRK00349 28 LVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS 60 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899988988868999988788878788885443
No 409
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.76 E-value=0.03 Score=34.32 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 88189866687789678999999
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIA 29 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA 29 (217)
+.-+++|=||+||||||+.+.+-
T Consensus 20 ~Ge~~~iiG~nGsGKSTLl~~~~ 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99899999999998999999888
No 410
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.75 E-value=0.027 Score=34.60 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=23.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=++++=||.||||||+.+.|+-.+ ..++|.
T Consensus 26 ge~~~l~G~NGsGKTTl~~~l~G~~---~~~~G~ 56 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGI 56 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCCCEE
T ss_conf 9999999899984999999984898---898509
No 411
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.74 E-value=0.029 Score=34.48 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=25.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
+.=+++|=||.||||||+.+.|+ |+.--++|.+
T Consensus 25 ~Gei~~liG~nGaGKSTLl~~i~---Gl~~p~~G~I 57 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIM---GLLPPRSGSI 57 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCCCCCEEE
T ss_conf 99899999999985999999997---7988996099
No 412
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.72 E-value=0.03 Score=34.33 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.6
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 81898666877896789999
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRF 27 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~ 27 (217)
.-+++|=||+||||||+...
T Consensus 21 G~~~aIiG~sGsGKSTLl~~ 40 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLIND 40 (261)
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 99999987999869999999
No 413
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.71 E-value=0.028 Score=34.52 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=25.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||.||||||+.+.|+- +..-++|.+
T Consensus 48 GeivgilG~NGaGKSTLl~~i~G---l~~p~~G~I 79 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAG---IYPPDSGTV 79 (224)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCCEE
T ss_conf 98999997999819999999975---877787769
No 414
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.70 E-value=0.023 Score=35.05 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.=+|+|=||.||||||+.|.|+-.+.
T Consensus 338 GeriaIvG~NGsGKSTLlk~L~G~l~ 363 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIKLLAGELA 363 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 84799974787138899999728878
No 415
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=94.65 E-value=0.022 Score=35.18 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=24.1
Q ss_pred EECCCCCCHHHHHHHHHHHH-CCCEEECC
Q ss_conf 66687789678999999981-78356202
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEY-GFHYLDTG 40 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l-~~~~ldtG 40 (217)
--|=+|+||||||+.||+=| .+.-|+=|
T Consensus 47 FKGNPGTGKTTVAR~~gklf~emnvL~KG 75 (261)
T TIGR02881 47 FKGNPGTGKTTVARLLGKLFKEMNVLSKG 75 (261)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 42786684389999999998533756788
No 416
>KOG2028 consensus
Probab=94.64 E-value=0.0092 Score=37.42 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC---EEECC
Q ss_conf 9866687789678999999981783---56202
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFH---YLDTG 40 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~---~ldtG 40 (217)
+-.=||+|+||+|+|+.||..-.-. |+.+.
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028 165 MILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 588669987658899999860577742799974
No 417
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=94.61 E-value=0.029 Score=34.42 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+.++=||+||||||+.+.|+--+ --++|.
T Consensus 31 GEi~~liG~nGaGKSTL~~~l~G~~---~~~~G~ 61 (510)
T PRK09700 31 GEIHALLGENGAGKSTLMKVLSGIH---EPTKGT 61 (510)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC---CCCCEE
T ss_conf 9699998999972999999983799---898569
No 418
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.60 E-value=0.031 Score=34.30 Aligned_cols=28 Identities=43% Similarity=0.699 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 8986668778967899999998178356202
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
.+|.=|||||||||+-+.|| |+..-++|
T Consensus 30 ~vaLlGpSGaGKsTlLRiIA---GLe~p~~G 57 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIA---GLETPDAG 57 (345)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCC
T ss_conf 89997789876788999985---75778875
No 419
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=94.59 E-value=0.044 Score=33.36 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=24.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 5588189866687789678999999981
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
..+.++|.|-||+|+||||+--.|..+|
T Consensus 26 ~g~a~~iGiTG~PGaGKStli~~l~~~~ 53 (267)
T pfam03308 26 TGRAHRVGITGVPGAGKSTLIEALGMEL 53 (267)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5995599876899887999999999999
No 420
>PRK13409 putative ATPase RIL; Provisional
Probab=94.57 E-value=0.031 Score=34.23 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=23.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5881898666877896789999999817
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
...-++.+=||-|+||||+-|.||-.+.
T Consensus 97 ~~G~v~GLiG~NGaGKST~lkILsG~l~ 124 (590)
T PRK13409 97 KEGKVTGILGPNGIGKSTAVKILSGELI 124 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9987899889999989999999958714
No 421
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.53 E-value=0.042 Score=33.50 Aligned_cols=47 Identities=21% Similarity=0.097 Sum_probs=34.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE----EECCHHHHHHHHHHH
Q ss_conf 55881898666877896789999999817835----620289999985232
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHY----LDTGLIYRAVAKNIL 51 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~----ldtG~~YR~~a~~~~ 51 (217)
..++-+|..=||-||||||.+-+||.+|.-.- +=|.-.||+-|..=+
T Consensus 72 ~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQL 122 (270)
T PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL 122 (270)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
T ss_conf 799818999888989889999999999986799089998388888899999
No 422
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.53 E-value=0.034 Score=34.06 Aligned_cols=33 Identities=39% Similarity=0.511 Sum_probs=25.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
+.-+++|=||.||||||+-|.|+ |+..-++|.+
T Consensus 25 ~G~i~~i~G~NGsGKSTLlk~i~---Gl~~p~~G~I 57 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIA---GIMQPSSGNI 57 (195)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCCCCCEEE
T ss_conf 99799999999981999999996---7988984089
No 423
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.043 Score=33.40 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 89866687789678999999981783562
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
-|-.=||.||||+-+|+-||+.|+.+|-=
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFai 127 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAI 127 (408)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 17998889975779999999984898475
No 424
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.50 E-value=0.035 Score=33.98 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=24.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||.||||||+-+.|+-- ..-++|.+
T Consensus 28 Gei~~llG~NGaGKSTLl~~i~Gl---~~p~~G~I 59 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE---LRPTSGTA 59 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC---CCCCCCCE
T ss_conf 959999989997399999999669---87889977
No 425
>KOG1384 consensus
Probab=94.49 E-value=0.049 Score=33.07 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=38.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHH
Q ss_conf 88189866687789678999999981783562028999998523210111014
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDD 59 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~ 59 (217)
|.-+|-|-||.|||||-+|--||.+|+-.-+++-.|==+=.+-+..+++.+.+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e 58 (348)
T KOG1384 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQE 58 (348)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCHHH
T ss_conf 73599995577777046678889757864651563356327662016687554
No 426
>PRK06620 hypothetical protein; Validated
Probab=94.45 E-value=0.053 Score=32.88 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 89866687789678999999981783562
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
.+-|-||+|||||.+++..++.-+..+++
T Consensus 46 ~l~I~Gp~gSGKTHL~~i~~~~~~a~~~~ 74 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 59998799998899999999982858815
No 427
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.45 E-value=0.034 Score=33.99 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+++|=|++||||||+++.|+--+
T Consensus 350 GE~l~lvG~sGsGKSTl~r~l~gl~ 374 (623)
T PRK10261 350 GETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9589997678766899999985664
No 428
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.44 E-value=0.045 Score=33.32 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE----EECCHHHHHHHHH
Q ss_conf 898666877896789999999817835----6202899999852
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHY----LDTGLIYRAVAKN 49 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~----ldtG~~YR~~a~~ 49 (217)
||++=||.|+||||..-+||.++--.- +=|---||+-|..
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~e 45 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIE 45 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 99998999998899999999999976992899974887577999
No 429
>KOG0735 consensus
Probab=94.40 E-value=0.039 Score=33.69 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 8986668778967899999998178
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
-|-|+||.|||||++++.+++.+.-
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k 457 (952)
T KOG0735 433 NILLNGPKGSGKTNLVKALFDYYSK 457 (952)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 1898679987776999999987515
No 430
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.39 E-value=0.035 Score=33.93 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 98666877896789999999817
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~ 33 (217)
|-|-||+|+||||-|+.||.-|.
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 69956999974689999999998
No 431
>KOG0055 consensus
Probab=94.38 E-value=0.045 Score=33.30 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=27.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC----CEEECCHHHHHHH
Q ss_conf 818986668778967899999998178----3562028999998
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGF----HYLDTGLIYRAVA 47 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~----~~ldtG~~YR~~a 47 (217)
...+|+=|||||||||+-++|+.-|+= -++| |.=-|-+-
T Consensus 379 G~~valVG~SGsGKST~i~LL~RfydP~~G~V~iD-G~di~~~~ 421 (1228)
T KOG0055 379 GQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLID-GEDIRNLN 421 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEC-CCCCHHCC
T ss_conf 98899988999879999999997268878659976-85601226
No 432
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.37 E-value=0.039 Score=33.68 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 881898666877896789999999
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~ 30 (217)
++-|-|+=|||||||||.-+.+-.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 780699888988678889999875
No 433
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.36 E-value=0.031 Score=34.25 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=24.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=+++|=||+||||||+++.|+ |+.--++|.+
T Consensus 279 GEivgivG~nGsGKSTL~k~L~---Gl~~p~~G~I 310 (501)
T PRK11288 279 GEIVGFFGLVGAGRSELMKLLY---GATRRTAGQV 310 (501)
T ss_pred CEEEEEECCCCCCHHHHHHHHC---CCCCCCCCEE
T ss_conf 8399975688864879999843---8748876659
No 434
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=94.35 E-value=0.032 Score=34.19 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 8666877896789999999817835
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
-..||-|+||+|+|+.+|+-||+.-
T Consensus 42 lf~G~rGvGKTt~ARi~Ak~lNC~~ 66 (717)
T PRK08853 42 LFSGTRGVGKTTIGRLFAKGLNCET 66 (717)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 6108898889899999999867899
No 435
>KOG0731 consensus
Probab=94.34 E-value=0.035 Score=33.93 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 9866687789678999999981783562
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
+-+-||+|+|||-+||.+|-.-|.+|++
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAgVPF~s 374 (774)
T KOG0731 347 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 374 (774)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 1787899986789999885305896464
No 436
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.33 E-value=0.042 Score=33.47 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=25.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.-+++|=||.|+||||+.+.|+ |+.--++|.
T Consensus 28 Gei~~liGpNGaGKSTLl~~i~---Gl~~p~~G~ 58 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVIT---GKTRPDEGS 58 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCCCEE
T ss_conf 9899999899975999999996---795788559
No 437
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.33 E-value=0.032 Score=34.15 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 666877896789999999817835
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
.-||-|+||+|+|+.||+-||+..
T Consensus 50 ~~g~rg~gktt~ari~a~~lnc~~ 73 (600)
T PRK09111 50 LTGVRGVGKTTTARILARALNYKG 73 (600)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 457898789999999999966988
No 438
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=94.31 E-value=0.052 Score=32.93 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=23.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 588189866687789678999999981
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.+..+|.|-||+|+||||+--.|+..|
T Consensus 47 g~a~~iGiTG~pG~GKStli~~l~~~~ 73 (325)
T PRK09435 47 GNALRIGITGVPGVGKSTFIEALGMHL 73 (325)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 982599742799986889999999999
No 439
>PRK10646 putative ATPase; Provisional
Probab=94.29 E-value=0.044 Score=33.36 Aligned_cols=107 Identities=19% Similarity=0.270 Sum_probs=57.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCH
Q ss_conf 558818986668778967899999998178356202899999852321011101465533332-1011124444443201
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIA-QNIVLSNLDKAQLSSN 83 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~lr~~ 83 (217)
-...-+|+..|+=|+||||.+|.+++.||..-- ++ .+.+. +..... .+..+...|--.|.+
T Consensus 25 l~~g~vi~L~G~LGaGKTtf~r~i~~~lg~~~~--------V~------SPTf~---lv~~Y~~~~~~~~H~DlYRl~~- 86 (153)
T PRK10646 25 CDGATVIYLYGDLGAGKTTFSRGFLQALGHQGN--------VK------SPTYT---LVEPYTLDNLMVYHFDLYRLAD- 86 (153)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC--------CC------CCCEE---EEEEECCCCCEEEEEEEECCCC-
T ss_conf 899979999888878999999999998499786--------26------99764---7997328993389998534699-
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE-EEECCCHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 210011112205789999887888876303884-6206412556630388689984488889
Q gi|254780457|r 84 AIANVASQVASIDSVRDALIDIQRSFAQNKLGV-ILDGRDIGTIIFPDARIKFYVTASLDIR 144 (217)
Q Consensus 84 ~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~-V~EGRDigTvVfPdA~~KifL~As~e~R 144 (217)
..++-. .-+ .++... .++ ++|==+...-.+|+.++.|.+.-..+-|
T Consensus 87 -----------~~e~~~--lg~-~e~~~~-~~i~lIEWpe~~~~~lP~~~l~I~i~~~~~~R 133 (153)
T PRK10646 87 -----------PEELEF--MGI-RDYFAN-DAICLVEWPQQGTGVLPDPDVEIHIDYQAQGR 133 (153)
T ss_pred -----------HHHHHH--CCC-HHHHCC-CCEEEEECCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf -----------889987--787-888579-96999989765101088476899999859984
No 440
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.28 E-value=0.046 Score=33.21 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=29.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCCEEECCHHHHHHHH
Q ss_conf 89866687789678999999981-----7835620289999985
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEY-----GFHYLDTGLIYRAVAK 48 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l-----~~~~ldtG~~YR~~a~ 48 (217)
+|-|-||+|+||||++..+|... ..-|++.|---+-+..
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~ 44 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTE 44 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
T ss_conf 98999899998999999999998763997999986664489999
No 441
>KOG0741 consensus
Probab=94.26 E-value=0.042 Score=33.45 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=50.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHH
Q ss_conf 898666877896789999999817835620289999985232101-110146553333210111244--44443201210
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAG-ISLDDEKMAIKIAQNIVLSNL--DKAQLSSNAIA 86 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~-~~~~~~~~~~~~~~~i~~~~~--~~~~lr~~~I~ 86 (217)
-+-+.||+||||+++|-.+|..=+|+|+-- +--.. +-+++. ......+.++-+-- .-+-|--++|.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKi----------iSpe~miG~sEs-aKc~~i~k~F~DAYkS~lsiivvDdiE 608 (744)
T KOG0741 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKI----------ISPEDMIGLSES-AKCAHIKKIFEDAYKSPLSIIVVDDIE 608 (744)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEE----------ECHHHHCCCCHH-HHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 899866998876889999975279984797----------377870374667-889999998887633865089981556
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 01111220578999988788887630
Q gi|254780457|r 87 NVASQVASIDSVRDALIDIQRSFAQN 112 (217)
Q Consensus 87 ~~~S~iA~~p~VR~~l~~~Qr~~~~~ 112 (217)
.+.-.++-=|..-+.+++...-+.+.
T Consensus 609 rLiD~vpIGPRfSN~vlQaL~VllK~ 634 (744)
T KOG0741 609 RLLDYVPIGPRFSNLVLQALLVLLKK 634 (744)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 56200246840357999999999524
No 442
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=94.26 E-value=0.036 Score=33.85 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8666877896789999999817
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~ 33 (217)
=+-||+|+|||++++.||..+.
T Consensus 2 ~l~G~~G~GKS~~a~~la~~~~ 23 (105)
T pfam00910 2 WLYGPPGCGKSTLAKYLARALL 23 (105)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 8979998988999999999999
No 443
>KOG0057 consensus
Probab=94.25 E-value=0.026 Score=34.76 Aligned_cols=175 Identities=19% Similarity=0.213 Sum_probs=87.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH------HHHHHHHHHCCCC--H-HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 18986668778967899999998178356202899------9998523210111--0-1465533332101112444444
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIY------RAVAKNILDAGIS--L-DDEKMAIKIAQNIVLSNLDKAQ 79 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~Y------R~~a~~~~~~~~~--~-~~~~~~~~~~~~i~~~~~~~~~ 79 (217)
=.+||-|++||||||+-++|=.-|. ++|.+| +.+....+++-+. + +..-+......|+.+.+ ..
T Consensus 379 ekVaIvG~nGsGKSTilr~LlrF~d----~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn---~s 451 (591)
T KOG0057 379 EKVAIVGSNGSGKSTILRLLLRFFD----YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN---PS 451 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC----CCCCEEECCEEHHHHCHHHHHHHEEEECCCCCCCCHHHHHHHHCCC---CC
T ss_conf 7898978999878899999999744----6885999873376507577652216767766430065998863289---87
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC-----HHHHHHCCCCEEEEEEC--CHHHHHHHHHHHH
Q ss_conf 3201210011112205789999887888876303884620641-----25566303886899844--8888999986677
Q gi|254780457|r 80 LSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRD-----IGTIIFPDARIKFYVTA--SLDIRARRRYNEM 152 (217)
Q Consensus 80 lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRD-----igTvVfPdA~~KifL~A--s~e~RA~RR~~el 152 (217)
...++|-+.+-...-++-++++=..+|..... .|+-+-|-- +...+..||++=+|=.| +++.-++|
T Consensus 452 as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGe--rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~----- 524 (591)
T KOG0057 452 ASDEEVVEACKRAGLHDVISRLPDGYQTLVGE--RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETER----- 524 (591)
T ss_pred CCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHH--CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH-----
T ss_conf 68899999999728378887366630326753--44425640678999999984589868863765323656699-----
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCC-----CCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 65211135699999999985610236-----757853799739997789898999999999
Q gi|254780457|r 153 VSRGEKVDYVKILEDLRNRDNQDRNR-----SYCPLVRDKDAYFFDTSEMDIGTMCKVAKG 208 (217)
Q Consensus 153 ~~~g~~~~~~ev~~~i~~RD~~D~~R-----~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~ 208 (217)
+++..|.. -..+++= -++-|+..+.-+++|+.........+..+.
T Consensus 525 ----------~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057 525 ----------EILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ----------HHHHHHHH-HCCCCEEEEEEECCHHHHCCCEEEEEECCEEEEECCHHHHHH
T ss_conf ----------99999987-517976999996303475088899997881677645899852
No 444
>KOG0733 consensus
Probab=94.24 E-value=0.035 Score=33.94 Aligned_cols=29 Identities=24% Similarity=0.498 Sum_probs=25.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEC
Q ss_conf 98666877896789999999817835620
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDT 39 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldt 39 (217)
|-.=||+|+||+-+||.+|..-|.+|++-
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733 548 VLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 38757998618899999850304754762
No 445
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.23 E-value=0.37 Score=27.80 Aligned_cols=131 Identities=15% Similarity=0.272 Sum_probs=61.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-----CCCEEECC----HHHHHHHHHHH----HC-----CCCHHHHHHHHHHHH-
Q ss_conf 8189866687789678999999981-----78356202----89999985232----10-----111014655333321-
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY-----GFHYLDTG----LIYRAVAKNIL----DA-----GISLDDEKMAIKIAQ- 68 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l-----~~~~ldtG----~~YR~~a~~~~----~~-----~~~~~~~~~~~~~~~- 68 (217)
.-++-|-|++|+||||++-.+|... .-.|+||- .=++.++.... ++ ..++++.........
T Consensus 19 G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~i~v~~~~~~~~~~~~i~~~~~ 98 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETET 98 (218)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 87999989999849999999999986369869999665567699999987536665305146267876889999999997
Q ss_pred ----HCCCCCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEC-----------CCHHHHHHCC-
Q ss_conf ----011124444-4432012100111122057899998878888763038-846206-----------4125566303-
Q gi|254780457|r 69 ----NIVLSNLDK-AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKL-GVILDG-----------RDIGTIIFPD- 130 (217)
Q Consensus 69 ----~i~~~~~~~-~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~-g~V~EG-----------RDigTvVfPd- 130 (217)
++.+--.|+ ..+...++........+..++...+..++ .+++... -+|+-| |-+|=.++-+
T Consensus 99 ~~~~~~~lvViDSi~tl~~~e~~~~~~~~~~~r~l~~~~~~L~-~~Ak~~~~~vil~nqVt~~~~~~~~~p~GG~~LeH~ 177 (218)
T cd01394 99 FADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLL-WLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHW 177 (218)
T ss_pred HHHCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHCCCEEEEEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 6414772999914045545540689647999999999999999-998766988999921588457775655672041411
Q ss_pred CCEEEEEEC
Q ss_conf 886899844
Q gi|254780457|r 131 ARIKFYVTA 139 (217)
Q Consensus 131 A~~KifL~A 139 (217)
++..+||.-
T Consensus 178 vd~vl~~e~ 186 (218)
T cd01394 178 SKVILRLEK 186 (218)
T ss_pred CCEEEEEEC
T ss_conf 028999984
No 446
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=94.22 E-value=0.052 Score=32.91 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 89866687789678999999981
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l 32 (217)
++.|=||.+|||||+++.|+..+
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~ 24 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYL 24 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79999489998999999999999
No 447
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.042 Score=33.50 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 818986668778967899999998
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALE 31 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~ 31 (217)
.=+++|=||+||||||+++.|+--
T Consensus 274 GEivgl~G~nGsGKsTL~~~l~Gl 297 (491)
T PRK10982 274 GEILGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 968997789999788999998198
No 448
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=94.20 E-value=0.081 Score=31.77 Aligned_cols=116 Identities=12% Similarity=0.176 Sum_probs=55.2
Q ss_pred EEECCCCCCHHHHHHHHHHHH--CCCEEECCHHH-----HHHHHHHHHCCCCHHH---HHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 866687789678999999981--78356202899-----9998523210111014---6553333210111244444432
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEY--GFHYLDTGLIY-----RAVAKNILDAGISLDD---EKMAIKIAQNIVLSNLDKAQLS 81 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l--~~~~ldtG~~Y-----R~~a~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~lr 81 (217)
=|-|++.||||..|-.+|..+ ...|+-|+.-| +-+..+-.+.+..+.- ...+.+...+..- ..-+-
T Consensus 2 LVtGG~rSGKS~~AE~la~~~~~~~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w~tiE~~~~l~~~l~~~~~----~~~vL 77 (166)
T pfam02283 2 LVTGGARSGKSRFAERLALASGGPVVYIATAQAFDDEMAERIARHRARRPAGWTTIEEPLDLAEALARLPG----GDVVL 77 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCC----CCEEE
T ss_conf 88688773389999999985599819997698888899999999997189996799774459999984698----98699
Q ss_pred CHHHHCCCCCCC----HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCC
Q ss_conf 012100111122----05789999887888876303884620641255663038
Q gi|254780457|r 82 SNAIANVASQVA----SIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDA 131 (217)
Q Consensus 82 ~~~I~~~~S~iA----~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTvVfPdA 131 (217)
-+.++.+++..- ....+-..+..+...+......+|+=.-.+|.=+.|.-
T Consensus 78 iDclt~wl~N~l~~~~~~~~~~~~~~~ll~~l~~~~~~~ViVsnEvG~Givp~~ 131 (166)
T pfam02283 78 VDCLTLWLTNLLFAGDDEEDIEAEVDELLAALKARPAPVVLVSNEVGLGIVPEN 131 (166)
T ss_pred EECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 971778999987623747789999999999997489979999767678875898
No 449
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.054 Score=32.84 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCE--------EECCHHHHHHHHHHHH
Q ss_conf 881898666877896789999999817835--------6202899999852321
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHY--------LDTGLIYRAVAKNILD 52 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~--------ldtG~~YR~~a~~~~~ 52 (217)
++=||+.=||.|+||||+.-+||.+|.+.. |=|.--||.-|..-++
T Consensus 173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLk 226 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQ 226 (388)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 762899989988757879999999999862676773799980787588999999
No 450
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.15 E-value=0.027 Score=34.61 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=31.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE--ECCHHHHHHHHHHHHCCCC
Q ss_conf 986668778967899999998178356--2028999998523210111
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYL--DTGLIYRAVAKNILDAGIS 56 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~l--dtG~~YR~~a~~~~~~~~~ 56 (217)
+-+-||+|-||+|+|..+|..+|-++- +-.++=|.--+.++-.++.
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le 102 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLE 102 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 786479987688899999998567737636620157265999986398
No 451
>PRK10536 hypothetical protein; Provisional
Probab=94.12 E-value=0.035 Score=33.97 Aligned_cols=28 Identities=39% Similarity=0.459 Sum_probs=20.6
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 55588189866687789678999999981
Q gi|254780457|r 4 LESQSIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 4 ~~~k~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
+.++.+++++ ||||||||=+|-..|-++
T Consensus 71 i~~~~ivf~~-GpAGTGKT~lA~a~Al~~ 98 (262)
T PRK10536 71 IESKQLIFAT-GEAGCGKTWISAAKAAEA 98 (262)
T ss_pred HHHCCEEEEE-CCCCCCHHHHHHHHHHHH
T ss_conf 8619839998-999875899999999999
No 452
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.11 E-value=0.031 Score=34.27 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.9
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 66687789678999999981783562028
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
..||=|+||||+||.+|+.||+..--+|.
T Consensus 43 fsG~RGvGKTt~Ari~AkalNC~~~~~~e 71 (515)
T COG2812 43 FSGPRGVGKTTIARILAKALNCENGPTAE 71 (515)
T ss_pred HCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 13777767104999999995688987777
No 453
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.10 E-value=0.052 Score=32.94 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=30.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH----CCCE--------EECCHHHHHHHHHHHHCCC
Q ss_conf 8189866687789678999999981----7835--------6202899999852321011
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY----GFHY--------LDTGLIYRAVAKNILDAGI 55 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l----~~~~--------ldtG~~YR~~a~~~~~~~~ 55 (217)
.-..++=|||||||||+-|++-.=+ |--+ +|-=.|-|-+.|.+.+.+.
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigL 86 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGL 86 (309)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 728999878997578799999605588885389899044658889998753354222156
No 454
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.09 E-value=0.046 Score=33.24 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=15.9
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8818986668778967899
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLS 25 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~a 25 (217)
+.=+++|=||+||||||++
T Consensus 20 ~Ge~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 20 RNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CCCEEEEECCCCCHHHHHH
T ss_conf 9989999878996098983
No 455
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.06 E-value=0.067 Score=32.26 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=28.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC--CEEECCH
Q ss_conf 818986668778967899999998178--3562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGF--HYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~--~~ldtG~ 41 (217)
.=+++|=|-|||||||+++.|-.-|.. ..+.+|.
T Consensus 31 GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~ 66 (316)
T COG0444 31 GEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66 (316)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 968999838978899999999846688897486118
No 456
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.05 E-value=0.074 Score=32.02 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 58818986668778967899999998178
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
.+.-++.+=||..|||||++..||.++.-
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~ 99 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLA 99 (398)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 68738999898676788999999988764
No 457
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.05 E-value=0.056 Score=32.71 Aligned_cols=42 Identities=19% Similarity=0.088 Sum_probs=33.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CEEECCHHHHHHHHHHH
Q ss_conf 8986668778967899999998178----35620289999985232
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGF----HYLDTGLIYRAVAKNIL 51 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~----~~ldtG~~YR~~a~~~~ 51 (217)
||++=||-||||||..-+||.+|.- .-|-++--||+-|..=+
T Consensus 208 VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQL 253 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQF 253 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 8999899989789999999999997799179997066778899999
No 458
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=94.04 E-value=0.042 Score=33.49 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 898666877896789999999
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~ 30 (217)
.++|=||||+||||+=|-|-.
T Consensus 30 ~~~~IG~SGAGKSTLLR~iNr 50 (253)
T TIGR02315 30 FVAVIGPSGAGKSTLLRCINR 50 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 799973788726799987753
No 459
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.03 E-value=0.052 Score=32.92 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 881898666877896789999999817
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
+.-+..+=|.|||||||+++.|..=+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 898789993688877879999972838
No 460
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.02 E-value=0.058 Score=32.66 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 8986668778967899999998178
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
||+|-|.+||||||+...|-..|.=
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l~~ 28 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 7999946999999999999999998
No 461
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.02 E-value=0.05 Score=33.05 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1898666877896789999999
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIAL 30 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~ 30 (217)
=.|||=|||||||||+-+.|+-
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 6899987888868999999866
No 462
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.99 E-value=0.043 Score=33.39 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=26.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH
Q ss_conf 18986668778967899999998178356202899
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIY 43 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~Y 43 (217)
=.+||=|||||||||+--.+| |+.-.++|-++
T Consensus 37 e~vaivG~SGSGKSTLl~vlA---GLd~~ssGeV~ 68 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLA---GLDDPSSGEVR 68 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCCCCEEE
T ss_conf 658887788875776999995---67789985489
No 463
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.046 Score=33.23 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 88189866687789678999999981783562
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
..-+-||=||-||||||+|..|+-+=+|..-.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~ 60 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTE 60 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEEEC
T ss_conf 98289998899878899999972899746755
No 464
>KOG0707 consensus
Probab=93.98 E-value=0.084 Score=31.69 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CCEEECC
Q ss_conf 898666877896789999999817--8356202
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG--FHYLDTG 40 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~--~~~ldtG 40 (217)
-|-|-||+|+||+|+.++|=++++ |.|--|+
T Consensus 39 ~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ 71 (231)
T KOG0707 39 PIVLSGPSGVGKSTLLKRLREELGGMFGFSVSH 71 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 279858877543579999998737761377457
No 465
>PRK09087 hypothetical protein; Validated
Probab=93.98 E-value=0.076 Score=31.93 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEC
Q ss_conf 898666877896789999999817835620
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDT 39 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldt 39 (217)
.+.+=||+|||||-+++..+++.+..+++.
T Consensus 46 ~~~L~Gp~gsGKTHL~~~~~~~~~a~~~~~ 75 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKADALLVHP 75 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf 589989999988699999999809968366
No 466
>KOG1969 consensus
Probab=93.97 E-value=0.095 Score=31.37 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=32.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE-------CCHHHHHHHHHHHH
Q ss_conf 89866687789678999999981783562-------02899999852321
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLD-------TGLIYRAVAKNILD 52 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ld-------tG~~YR~~a~~~~~ 52 (217)
|.-.-||+|-||||+|.-+|++-||.-++ |+.+.+..-+.+.+
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 68753688787247999999862854887325554347889999999886
No 467
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=93.96 E-value=0.081 Score=31.78 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=55.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCHH
Q ss_conf 88189866687789678999999981783-56202899999852321011101465533332101112444-44432012
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFH-YLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLD-KAQLSSNA 84 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~-~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~lr~~~ 84 (217)
...||...|==||||||..|.+|+.||.. ++.|= ||-+.+ ..+..+ .-.-.+++--.+ ..++
T Consensus 27 ~~~v~~L~GDlGaGKTtl~~G~~~~LG~~~~~~SP------Tftlv~-~Y~~~~-----~~~YH~DlYR~~~~~E~---- 90 (147)
T TIGR00150 27 LGTVVLLKGDLGAGKTTLVKGLLQGLGITGNVTSP------TFTLVN-EYNEGN-----LPLYHFDLYRLADPEEL---- 90 (147)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECC------CCCEEE-EEECCC-----CCEEEEEEECCCCHHHH----
T ss_conf 75389973234666589999999837922688579------321010-011378-----51533334205772344----
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEE-EECCCHHHHHHC-CCCEEEEEECCHH
Q ss_conf 10011112205789999887888876303---8846-206412556630-3886899844888
Q gi|254780457|r 85 IANVASQVASIDSVRDALIDIQRSFAQNK---LGVI-LDGRDIGTIIFP-DARIKFYVTASLD 142 (217)
Q Consensus 85 I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~---~g~V-~EGRDigTvVfP-dA~~KifL~As~e 142 (217)
+++ .-+++-.+. -|++ +|==+.+.-+.| +.++.|=+.---+
T Consensus 91 ---------------E~~--g~~~y~~~~DfPlgI~lvEWp~~~~~~lPK~~~l~i~~~~~~~ 136 (147)
T TIGR00150 91 ---------------ELL--GLEEYFEGDDFPLGICLVEWPEEGLEILPKDEDLQIKIKYVGD 136 (147)
T ss_pred ---------------HHH--HHHHHHCCCCCCEEEEEEEECHHCCCCCCCCCCEEEEEEEECC
T ss_conf ---------------541--2488844699856899984120016768865303799998728
No 468
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=93.96 E-value=0.035 Score=33.91 Aligned_cols=134 Identities=23% Similarity=0.272 Sum_probs=62.1
Q ss_pred EEEEECCCCCCHHHHHH-HHHHHHCCCEEECC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHH
Q ss_conf 89866687789678999-99998178356202-899999852321011101465533332101112444-4443201210
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSR-FIALEYGFHYLDTG-LIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLD-KAQLSSNAIA 86 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak-~lA~~l~~~~ldtG-~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~lr~~~I~ 86 (217)
.|-|-|.|||||||+|= -|=..=.=.|+.|= ++.| .+|..=-++ |...+.-+++.|.++..- ..+-|
T Consensus 24 lVViTG~SGSGKSSLAFDTiYAEGQRRYvESLSaYAR----QFLg~~~KP-dVD~IEGLSPAIsIdQKtt~~NPR----- 93 (956)
T TIGR00630 24 LVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR----QFLGVMDKP-DVDSIEGLSPAISIDQKTTSHNPR----- 93 (956)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH----HHCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCC-----
T ss_conf 6999745688615456546766145002100158999----864787477-835014887617851252478885-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH-HCCCEEEECCC--------HHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 0111122057899998878888763-03884620641--------25566303-88689984488889999866776521
Q gi|254780457|r 87 NVASQVASIDSVRDALIDIQRSFAQ-NKLGVILDGRD--------IGTIIFPD-ARIKFYVTASLDIRARRRYNEMVSRG 156 (217)
Q Consensus 87 ~~~S~iA~~p~VR~~l~~~Qr~~~~-~~~g~V~EGRD--------igTvVfPd-A~~KifL~As~e~RA~RR~~el~~~g 156 (217)
|.|..+-||=++|--+ ||+ ..+-|=..||- |-..|+-. -.=|+-|=|.+ || +
T Consensus 94 ---STVGTvTEIyDYLRLL---fArvG~p~CP~~~~~i~~qt~~~Ivd~i~~~~~g~r~~lLAP~-Vr-----------~ 155 (956)
T TIGR00630 94 ---STVGTVTEIYDYLRLL---FARVGTPYCPECGRPIEEQTVSQIVDQILALPEGTRVILLAPI-VR-----------G 155 (956)
T ss_pred ---CCCCCEEEHHHHHHHH---HHHCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCEEEEECCC-CC-----------C
T ss_conf ---5444321036778999---9836887888777326433878999998624899658996573-24-----------7
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 113569999999998
Q gi|254780457|r 157 EKVDYVKILEDLRNR 171 (217)
Q Consensus 157 ~~~~~~ev~~~i~~R 171 (217)
.+-+|.++++++.+-
T Consensus 156 ~KG~f~~~l~~l~~~ 170 (956)
T TIGR00630 156 RKGEFRKLLEKLRKQ 170 (956)
T ss_pred CCCCHHHHHHHHHHC
T ss_conf 775289999999866
No 469
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=93.96 E-value=0.039 Score=33.67 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHCCCEEECCHHH
Q ss_conf 8986668778967899-999998178356202899
Q gi|254780457|r 10 IIAIDGTAAAGKGVLS-RFIALEYGFHYLDTGLIY 43 (217)
Q Consensus 10 iIaIDGpagsGKsT~a-k~lA~~l~~~~ldtG~~Y 43 (217)
.+.|-|+|||||||+| --|...=.-.|++|=.-|
T Consensus 963 LvViTGvSGSGKSSLAFDTLyAEGQRRY~ESlS~Y 997 (1809)
T PRK00635 963 LTAITGPSASGKHSLVFDILYAAGNIAYAELFPPY 997 (1809)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 69997898886899999889999999998641599
No 470
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.044 Score=33.38 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 98666877896789999999817835
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
.-..||-|+||+|+|+.+|+-||+.-
T Consensus 41 ylf~g~rg~gktt~ari~ak~lnc~~ 66 (696)
T PRK06872 41 YLFSGTRGVGKTSIARLFAKGLNCVH 66 (696)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 75117898888899999999867899
No 471
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.96 E-value=0.05 Score=33.02 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=24.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=++++=||.||||||+-+.|+-- ..-++|.+
T Consensus 47 Gei~gLlGpNGaGKSTllk~l~Gl---~~p~~G~I 78 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGL---LQPTSGEV 78 (236)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC---CCCCCEEE
T ss_conf 959999999983099999999649---48871599
No 472
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.91 E-value=0.05 Score=33.02 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88189866687789678999999981
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
+.=+++|=||+||||||+++.|+--+
T Consensus 277 ~GEi~gi~G~nGsGKsTL~~~l~Gl~ 302 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88189966788876889999981876
No 473
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.89 E-value=0.34 Score=28.08 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=27.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CCEEECCHHH
Q ss_conf 898666877896789999999817--8356202899
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYG--FHYLDTGLIY 43 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~--~~~ldtG~~Y 43 (217)
+|=|-|++.||||..|-.+|..++ ..|+-|+.-|
T Consensus 1 iiLVtGG~rSGKS~~AE~la~~~~~~~~YiAT~~~~ 36 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF 36 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 989977866368999999998459981999788988
No 474
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=0.046 Score=33.24 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.4
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 6668778967899999998178356
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHYL 37 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~l 37 (217)
.-||.|+||+++|+.+|+-|++..=
T Consensus 44 F~Gp~G~Gk~~~A~~~A~~l~C~~~ 68 (395)
T PRK07940 44 FTGPPGSGRSNAARAFAAALQCTDP 68 (395)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 3689987889999999999669999
No 475
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.88 E-value=0.046 Score=33.24 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9866687789678999999981783
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFH 35 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~ 35 (217)
.-..||-|+||+|+|+.+||-||+.
T Consensus 41 ylf~G~rGvGKTt~aRi~Ak~lnC~ 65 (816)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALNCE 65 (816)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 7511789888889999999986789
No 476
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=93.84 E-value=0.046 Score=33.25 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.7
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 666877896789999999817835
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
..||-|+||+|+|+.+||-||+..
T Consensus 43 ~~g~rg~gkt~~ar~~ak~lnc~~ 66 (705)
T PRK05648 43 FTGTRGVGKTTIARIIAKCLNCET 66 (705)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 007898889899999999867789
No 477
>PRK13542 consensus
Probab=93.82 E-value=0.059 Score=32.59 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=24.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
Q ss_conf 8189866687789678999999981783562028
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL 41 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~ 41 (217)
.=+++|=||.|+||||+-|.|+-- ..-++|.
T Consensus 44 Gei~~liGpNGaGKTTLlk~l~Gl---l~p~~G~ 74 (224)
T PRK13542 44 GDLLQVMGPNGSGKTSLLRVLSGL---MPPAEGD 74 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC---CCCCCEE
T ss_conf 979999999999999999999579---7888528
No 478
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.81 E-value=0.053 Score=32.88 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 8666877896789999999817835
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
-..||-|+||+|+|+.||+.||+..
T Consensus 41 LFsGprG~GKTt~ARilAkaLNC~~ 65 (775)
T PRK07764 41 LFSGPRGCGKTSSARILARSLNCAQ 65 (775)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 6237888788899999999966899
No 479
>KOG0061 consensus
Probab=93.76 E-value=0.059 Score=32.59 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 18986668778967899999998178
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
=+.||=|||||||||+-..||-+..-
T Consensus 57 el~AimG~SGsGKtTLL~~Lagr~~~ 82 (613)
T KOG0061 57 ELLAIMGPSGSGKTTLLNALAGRLNG 82 (613)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 68999768887799999999577887
No 480
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.063 Score=32.43 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=25.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
.=++++=||.||||||+-+.|+ |+..-++|.+
T Consensus 26 Gei~gl~G~NGaGKSTLl~~i~---Gl~~p~~G~i 57 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIIL---GLLKPDSGEI 57 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCCCCCEE
T ss_conf 9399998789979999999997---6857787889
No 481
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=93.65 E-value=0.041 Score=33.56 Aligned_cols=85 Identities=20% Similarity=0.353 Sum_probs=45.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE---CCHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 9866687789678999999981783562---028999998523210111014--65533332101112444444320121
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLD---TGLIYRAVAKNILDAGISLDD--EKMAIKIAQNIVLSNLDKAQLSSNAI 85 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ld---tG~~YR~~a~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~lr~~~I 85 (217)
|-.=||+|+|||=+||.+|..-+-.|+- |-..-.++. .|-.+-. +.+..+.+..|.| -+||
T Consensus 159 vLLyGPPGtGKTLlAKAvA~et~ATFIrvVgSElV~KyIG-----EGArLV~~~F~LAkEKaPsIiF---------IDEi 224 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIG-----EGARLVREVFELAKEKAPSIIF---------IDEI 224 (364)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHC-----CHHHHHHHHHHHHHCCCCCEEE---------EECH
T ss_conf 5700757976889999863145512688604444444413-----3168999999985306981686---------1013
Q ss_pred HCCC-----CCCCHHHHHHHHHHHHHHHH
Q ss_conf 0011-----11220578999988788887
Q gi|254780457|r 86 ANVA-----SQVASIDSVRDALIDIQRSF 109 (217)
Q Consensus 86 ~~~~-----S~iA~~p~VR~~l~~~Qr~~ 109 (217)
+..+ +.-+-..||..-|.++.=++
T Consensus 225 DAiaakR~~~~TsGdREV~RTlmQLLAEl 253 (364)
T TIGR01242 225 DAIAAKRVDSSTSGDREVQRTLMQLLAEL 253 (364)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 33543211467787315788999999752
No 482
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=93.63 E-value=0.056 Score=32.72 Aligned_cols=28 Identities=39% Similarity=0.616 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 8986668778967899999998178356202
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
|.||=|+|||||||+=+.+| |+.-.+.|
T Consensus 25 vtAlFG~SGsGKTtli~~ia---GL~rp~~G 52 (361)
T TIGR02142 25 VTALFGRSGSGKTTLIRLIA---GLTRPDEG 52 (361)
T ss_pred EEEEECCCCCHHHHHHHHHH---HCCCCCCC
T ss_conf 68712589970789999987---31675668
No 483
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=93.62 E-value=0.057 Score=32.69 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189866687789678999999981
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
.=+++|=||.||||||+-|.|+--+
T Consensus 28 GEi~gLIGPNGAGKSTLLk~I~Gll 52 (409)
T PRK09536 28 GHLVGVVGPNGAGKTTLLRAMNGLI 52 (409)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999998727999999996688
No 484
>KOG2170 consensus
Probab=93.61 E-value=0.085 Score=31.66 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=34.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHH
Q ss_conf 5588189866687789678999999981783562028999998
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVA 47 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a 47 (217)
..|+++++.-|++|+||+-+|+.||+.+--.-++|-..--.+|
T Consensus 107 p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fva 149 (344)
T KOG2170 107 PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVA 149 (344)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9987589830899875648999999998751125626887655
No 485
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.054 Score=32.84 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=23.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 866687789678999999981783562
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
-..||-|+||+|+|+.+|+-||+..-+
T Consensus 42 lf~G~rGvGKTt~ari~Ak~lnc~~~~ 68 (721)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNCTGPD 68 (721)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 502799888989999999997689986
No 486
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=93.60 E-value=0.068 Score=32.23 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE--ECCHHHHHH
Q ss_conf 8986668778967899999998178356--202899999
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYL--DTGLIYRAV 46 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~l--dtG~~YR~~ 46 (217)
+|-|=||.|||||-+|=.||+.|+-.-+ ||=.+|-.+
T Consensus 1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~ 39 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGM 39 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCC
T ss_conf 967740885547789999887689578743502322378
No 487
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.59 E-value=0.048 Score=33.11 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=32.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCE------EECCHHHHHHHHHHHH
Q ss_conf 1898666877896789999999817835------6202899999852321
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHY------LDTGLIYRAVAKNILD 52 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~------ldtG~~YR~~a~~~~~ 52 (217)
=|+|.=||.|+||||+--+||.++-+.| |=|---||.-|..-|+
T Consensus 177 gV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLk 226 (404)
T PRK06995 177 GVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLR 226 (404)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 55898668887637589999999999838983799976875478999999
No 488
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.55 E-value=0.071 Score=32.10 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 18986668778967899999998178
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
.-|-|-||.||||||+.+.|+..+.-
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~~ 51 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 98999899999899999999961334
No 489
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.52 E-value=0.059 Score=32.58 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=52.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
Q ss_conf 89866687789678999999981783562028999998523210111014655333321011124444443201210011
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVA 89 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~ 89 (217)
+|-|-||+|+||||+=-.|..+|--.-. -+|-.+.+..-...--.++-...+...+...+..-+|+-.-....
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~g~-------~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ 73 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGK-------RVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFL 73 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCC-------EEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 9762589978789999999999997898-------379999688878668620323545344157998368634666654
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEE--CCCHHHHHHCC-CCEEEEEECC
Q ss_conf 112205789999887888876303884620--64125566303-8868998448
Q gi|254780457|r 90 SQVASIDSVRDALIDIQRSFAQNKLGVILD--GRDIGTIIFPD-ARIKFYVTAS 140 (217)
Q Consensus 90 S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E--GRDigTvVfPd-A~~KifL~As 140 (217)
.-+| +..++.+..+. . ....-+++| |=-.+.+-+++ ||+-+|+-..
T Consensus 74 ggla--~~~~~~i~~l~-~--~g~D~IiIETvGvGQse~~i~~~aD~~i~v~~p 122 (148)
T cd03114 74 GGLS--RATPEVIRVLD-A--AGFDVIIVETVGVGQSEVDIASMADTTVVVMAP 122 (148)
T ss_pred CCHH--HHHHHHHHHHH-H--CCCCEEEEECCCCCCCHHHHHHHCCEEEEEECC
T ss_conf 2046--88999999999-7--599989997487775602655435669999636
No 490
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.51 E-value=0.071 Score=32.10 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 81898666877896789999999817
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~ 33 (217)
.-+++|=||-||||||+-|.|+.-+.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~~~l~ 53 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97999989988899999999865678
No 491
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.49 E-value=0.064 Score=32.40 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8818986668778967899999998
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALE 31 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~ 31 (217)
++-.+||=|--||||||+||+||--
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 7967999826997475899998355
No 492
>KOG0736 consensus
Probab=93.49 E-value=0.094 Score=31.37 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 88189866687789678999999981783562
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLD 38 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ld 38 (217)
.....-.-||+||||+|+.+..|.+||.+.+.
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~e 461 (953)
T KOG0736 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLE 461 (953)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 55379986799987579999999983872570
No 493
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.48 E-value=0.059 Score=32.60 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8666877896789999999817
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYG 33 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~ 33 (217)
=+.||.|+||+|+|+.+|+.+-
T Consensus 30 LF~Gp~G~GK~~~A~~~A~~ll 51 (313)
T PRK05564 30 LIVGEDGIGKSILAKEIANKIL 51 (313)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 3279998509999999999982
No 494
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=93.46 E-value=0.062 Score=32.48 Aligned_cols=123 Identities=24% Similarity=0.365 Sum_probs=69.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CCCCC-CCC
Q ss_conf 5588189866687789678999999981783562028999998523210111014655333321011124-44444-320
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSN-LDKAQ-LSS 82 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~-lr~ 82 (217)
..|++||+ |-.||||||..|.|-+. ++.++--+..+....+.+.. -+... +++
T Consensus 157 ~~knIii~--GGTgSGKTTf~kal~~~-----------------------IP~~ER~iTIED~~E~~~~hhpN~V~L~ys 211 (328)
T TIGR02788 157 SRKNIIIS--GGTGSGKTTFLKALVKE-----------------------IPKDERLITIEDTRELFLPHHPNKVHLFYS 211 (328)
T ss_pred CCCEEEEE--ECCCCHHHHHHHHHHHC-----------------------CCCCCCEEEEEEEECCCCCCCCCEEEEEEC
T ss_conf 38919999--06897189999999732-----------------------762252788852011478889864565534
Q ss_pred HHHHCCCCCCCHHHHHHHHH-----------------HHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 12100111122057899998-----------------8788887630388462064125566303886899844888899
Q gi|254780457|r 83 NAIANVASQVASIDSVRDAL-----------------IDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRA 145 (217)
Q Consensus 83 ~~I~~~~S~iA~~p~VR~~l-----------------~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA 145 (217)
..|+...+.|.....+-..| ..|-|.+.-.+||-|- | +.|+--.-|
T Consensus 212 k~v~~g~~~vt~~~Ll~scLRMrPDRI~LgELRG~Eaf~F~~~~nsGHpGsiT------T-----------~HA~s~~~A 274 (328)
T TIGR02788 212 KGVGQGSAKVTPKDLLESCLRMRPDRILLGELRGDEAFDFIRAVNSGHPGSIT------T-----------VHAGSPEEA 274 (328)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCEE------E-----------EEECCHHHH
T ss_conf 64234435689899999971177405767430332578888752059886056------7-----------871898999
Q ss_pred HHHHHHHHHHH---CCCCHHHHHHHHH
Q ss_conf 99866776521---1135699999999
Q gi|254780457|r 146 RRRYNEMVSRG---EKVDYVKILEDLR 169 (217)
Q Consensus 146 ~RR~~el~~~g---~~~~~~ev~~~i~ 169 (217)
--|...|.+.+ ...++++|.+-+.
T Consensus 275 f~qla~l~k~s~~g~gL~~~~I~~~~~ 301 (328)
T TIGR02788 275 FEQLALLVKESQAGLGLDYADIVKLLR 301 (328)
T ss_pred HHHHHHHHHCCHHHCCCCHHHHHHHHH
T ss_conf 999999872025435888899997742
No 495
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=93.44 E-value=0.057 Score=32.70 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEC
Q ss_conf 8666877896789999999817835620
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHYLDT 39 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~ldt 39 (217)
-.-||-|+||+|+|+.+||-||+..-.|
T Consensus 42 lf~g~rg~gkt~~ar~~a~~lnc~~~~~ 69 (663)
T PRK08770 42 LFTGTRGVGKTTIARIFAKSLNCETGTS 69 (663)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 6227998888899999999867899999
No 496
>KOG2878 consensus
Probab=93.41 E-value=0.042 Score=33.48 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=23.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 81898666877896789999999817835
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
+++|-+.||-||||||++-.|--+|-=.|
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky 59 (282)
T KOG2878 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKY 59 (282)
T ss_pred CEEEEECCCCCCCCEEEHHHHHHHHHHHH
T ss_conf 67999337888883043145678999985
No 497
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=93.40 E-value=0.082 Score=31.73 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=19.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 588189866687789678999999981
Q gi|254780457|r 6 SQSIIIAIDGTAAAGKGVLSRFIALEY 32 (217)
Q Consensus 6 ~k~~iIaIDGpagsGKsT~ak~lA~~l 32 (217)
++. ++.+.||||||||-+|-..|-++
T Consensus 18 ~~~-iv~~~GpAGtGKT~la~~~al~~ 43 (205)
T pfam02562 18 KND-IVFGIGPAGTGKTYLAVAAAVDA 43 (205)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 798-07998999860999999999999
No 498
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.40 E-value=0.074 Score=32.02 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.6
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 666877896789999999817835
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
+-||+|+||+++|+.+|+.|....
T Consensus 33 f~Gp~G~GK~~~A~~~A~~LlC~~ 56 (329)
T PRK08058 33 FEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 578999889999999999973999
No 499
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.37 E-value=0.084 Score=31.66 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=24.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 1898666877896789999999817835
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHY 36 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ 36 (217)
.|++|-|+++|||+|+-..|..+|.-..
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 2899996279973428999999997579
No 500
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=93.35 E-value=0.087 Score=31.60 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7655588189866687789678999999
Q gi|254780457|r 2 GRLESQSIIIAIDGTAAAGKGVLSRFIA 29 (217)
Q Consensus 2 ~~~~~k~~iIaIDGpagsGKsT~ak~lA 29 (217)
.+|+.+.+.|.+=|++||||||+-+.+.
T Consensus 8 ~~~~~~~~KililG~~~sGKTsll~~l~ 35 (173)
T cd04154 8 QKLKEREMRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHC
T ss_conf 5544573189999899978899999983
Done!