BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780457|ref|YP_003064870.1| cytidylate kinase [Candidatus Liberibacter asiaticus str. psy62] (217 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780457|ref|YP_003064870.1| cytidylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 217 Score = 433 bits (1113), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/217 (100%), Positives = 217/217 (100%) Query: 1 MGRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE 60 MGRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE Sbjct: 1 MGRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE 60 Query: 61 KMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG 120 KMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG Sbjct: 61 KMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG 120 Query: 121 RDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSY 180 RDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSY Sbjct: 121 RDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSY 180 Query: 181 CPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDNS 217 CPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDNS Sbjct: 181 CPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDNS 217 >gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 23.5 bits (49), Expect = 3.1, Method: Compositional matrix adjust. Identities = 10/17 (58%), Positives = 13/17 (76%) Query: 155 RGEKVDYVKILEDLRNR 171 +G+ +DYV L DLRNR Sbjct: 132 QGKVIDYVGGLNDLRNR 148 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.137 0.376 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,540 Number of Sequences: 1233 Number of extensions: 4987 Number of successful extensions: 14 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 7 length of query: 217 length of database: 328,796 effective HSP length: 70 effective length of query: 147 effective length of database: 242,486 effective search space: 35645442 effective search space used: 35645442 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 36 (18.5 bits)