BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780457|ref|YP_003064870.1| cytidylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (217 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780457|ref|YP_003064870.1| cytidylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 217

 Score =  433 bits (1113), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MGRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE 60
           MGRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE
Sbjct: 1   MGRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE 60

Query: 61  KMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG 120
           KMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG
Sbjct: 61  KMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG 120

Query: 121 RDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSY 180
           RDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSY
Sbjct: 121 RDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSY 180

Query: 181 CPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDNS 217
           CPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDNS
Sbjct: 181 CPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDNS 217


>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score = 23.5 bits (49), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 155 RGEKVDYVKILEDLRNR 171
           +G+ +DYV  L DLRNR
Sbjct: 132 QGKVIDYVGGLNDLRNR 148


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,540
Number of Sequences: 1233
Number of extensions: 4987
Number of successful extensions: 14
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 7
length of query: 217
length of database: 328,796
effective HSP length: 70
effective length of query: 147
effective length of database: 242,486
effective search space: 35645442
effective search space used: 35645442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)