HHsearch alignment for GI: 254780458 and conserved domain: TIGR03399
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=92.06 E-value=0.47 Score=25.72 Aligned_cols=120 Identities=13% Similarity=0.181 Sum_probs=70.3
Q ss_pred HHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHC-CCEEEEE-CCEEEEEECCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 999997449849997798028-------999999999984-9799998-9989998126887568531055033333220
Q gi|254780458|r 34 SIILGGIAAGETQIRGVLESD-------DVLNTMRMMHYL-GARFTKK-DREWIVQGVGNGCLLSPEYPLDFKGFDMGYG 104 (449)
Q Consensus 34 aLl~AaLa~g~s~i~n~~~s~-------Dv~~~l~al~~L-G~~i~~~-~~~~~i~g~g~~~~~~~~~~i~~~~sgt~~r 104 (449)
T Consensus 18 alaLS~itgkpi~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~-Pg~i~~g~~~~d~gtagsi~L 96 (326)
T TIGR03399 18 ALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFI-PGKIRGGDYRFDIGTAGSVTL 96 (326)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEE-CCCCCCCEEEEECCCCCEEEE
T ss_conf 9999997689779984689987988569999999999997198584114485799996-885457516875698836652
Q ss_pred EE---EEECCCCCCE--EEECCCCCC-CCCCCCCE----EEEEEECCCCEEE--CCCCCCCC
Q ss_conf 01---3431455310--331233333-44654210----1012312741010--13432220
Q gi|254780458|r 105 LM---MGVVGVYDFQ--TFFKGRAEI-LQPTIESL----LAPLYQMGVQVKL--PEDKRLPL 154 (449)
Q Consensus 105 ~l---~~~l~~~~~~--~~i~G~~~l-~~Rpi~~l----i~~L~~lGa~i~~--~~~~~~Pi 154 (449)
T Consensus 97 ~lq~llp~~~fa~~~~~l~l~GgT~v~~sPsvDy~~~v~lP~l~~fG~~~~~~i~kRGfyP~ 158 (326)
T TIGR03399 97 VLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGFYPR 158 (326)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 29999999963899769999855589999988999999999999739967999995567899