HHsearch alignment for GI: 254780458 and conserved domain: TIGR03399

>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=92.06  E-value=0.47  Score=25.72  Aligned_cols=120  Identities=13%  Similarity=0.181  Sum_probs=70.3

Q ss_pred             HHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHC-CCEEEEE-CCEEEEEECCCCCCCCCCCEEEECCCCCCCC
Q ss_conf             999997449849997798028-------999999999984-9799998-9989998126887568531055033333220
Q gi|254780458|r   34 SIILGGIAAGETQIRGVLESD-------DVLNTMRMMHYL-GARFTKK-DREWIVQGVGNGCLLSPEYPLDFKGFDMGYG  104 (449)
Q Consensus        34 aLl~AaLa~g~s~i~n~~~s~-------Dv~~~l~al~~L-G~~i~~~-~~~~~i~g~g~~~~~~~~~~i~~~~sgt~~r  104 (449)
T Consensus        18 alaLS~itgkpi~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~-Pg~i~~g~~~~d~gtagsi~L   96 (326)
T TIGR03399        18 ALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFI-PGKIRGGDYRFDIGTAGSVTL   96 (326)
T ss_pred             HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEE-CCCCCCCEEEEECCCCCEEEE
T ss_conf             9999997689779984689987988569999999999997198584114485799996-885457516875698836652


Q ss_pred             EE---EEECCCCCCE--EEECCCCCC-CCCCCCCE----EEEEEECCCCEEE--CCCCCCCC
Q ss_conf             01---3431455310--331233333-44654210----1012312741010--13432220
Q gi|254780458|r  105 LM---MGVVGVYDFQ--TFFKGRAEI-LQPTIESL----LAPLYQMGVQVKL--PEDKRLPL  154 (449)
Q Consensus       105 ~l---~~~l~~~~~~--~~i~G~~~l-~~Rpi~~l----i~~L~~lGa~i~~--~~~~~~Pi  154 (449)
T Consensus        97 ~lq~llp~~~fa~~~~~l~l~GgT~v~~sPsvDy~~~v~lP~l~~fG~~~~~~i~kRGfyP~  158 (326)
T TIGR03399        97 VLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGFYPR  158 (326)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf             29999999963899769999855589999988999999999999739967999995567899