HHsearch alignment for GI: 254780458 and conserved domain: cd00875
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=91.64 E-value=0.86 Score=24.02 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=66.2
Q ss_pred HHHHHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHHC--CCEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCC
Q ss_conf 999999974498499977980-------28999999999984--979999899899981268875685310550333332
Q gi|254780458|r 32 HFSIILGGIAAGETQIRGVLE-------SDDVLNTMRMMHYL--GARFTKKDREWIVQGVGNGCLLSPEYPLDFKGFDMG 102 (449)
Q Consensus 32 ~RaLl~AaLa~g~s~i~n~~~-------s~Dv~~~l~al~~L--G~~i~~~~~~~~i~g~g~~~~~~~~~~i~~~~sgt~ 102 (449)
T Consensus 14 R~~l~LS~l~gkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~it~g~~~~~~~~st~l~f~-Pg~i~gg~~~~d~~ta~si 92 (341)
T cd00875 14 RQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYK-PGLITGGVLNHDCPVSRGI 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCEEEEEE-CCCEECCCEEEECCCCCEE
T ss_conf 999999997499879998568996998579999999999996186485143483389997-9821078569967886340
Q ss_pred CCEEEEE---CCCC--CCEEEECCCCCC-CCCCCCCEEE----EEEECCC---C--EEECCCCCCC
Q ss_conf 2001343---1455--310331233333-4465421010----1231274---1--0101343222
Q gi|254780458|r 103 YGLMMGV---VGVY--DFQTFFKGRAEI-LQPTIESLLA----PLYQMGV---Q--VKLPEDKRLP 153 (449)
Q Consensus 103 ~r~l~~~---l~~~--~~~~~i~G~~~l-~~Rpi~~li~----~L~~lGa---~--i~~~~~~~~P 153 (449)
T Consensus 93 ~l~lq~ll~l~~f~~~~~~l~l~GgT~~~~~psvD~~~~v~lp~l~~fGi~~~~~~l~v~rRG~yP 158 (341)
T cd00875 93 GYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKRGVAP 158 (341)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 999999999997479973999992569999989899999999999985897543599998534589