HHsearch alignment for GI: 254780458 and conserved domain: cd01556

>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00  E-value=0  Score=680.09  Aligned_cols=401  Identities=31%  Similarity=0.464  Sum_probs=355.4

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCCCCEEEEC
Q ss_conf             36999818422289999999974498499977980289999999999849799998998999812688756853105503
Q gi|254780458|r   18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLLSPEYPLDFK   97 (449)
Q Consensus        18 L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~~~~~~i~~~   97 (449)
T Consensus         1 L~G~v~ipgsKs~s~r~li~aaL~~g~~~i~n~~~~~Dv~~~~~~l~~lG~~i~~~~~~~~i~~~~~-~~~~~~~~l~~g   79 (409)
T cd01556           1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEEGGTVEIVGGGG-LGLPPEAVLDCG   79 (409)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCC-CCCCCCHHHHHC
T ss_conf             9389987874899999999999659989990489039999999999987998998089999988888-777874111000


Q ss_pred             CCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCC-CCCCCEEECCCCCCCEEEEECCCCCCC
Q ss_conf             3333220013431455310331233333446542101012312741010134-322201202221111134302344433
Q gi|254780458|r   98 GFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPED-KRLPLVLHGPRTPNPIVYKSPMDSVQS  176 (449)
Q Consensus        98 ~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~-~~~Pi~I~g~~~~~~~~~~~~~~S~q~  176 (449)
T Consensus        80 ~sGt~~R~l~~ll~~~~~~~~l~G~~~l~~RPi~~~i~~L~~lGa~i~~~~~~~~~~~~~~~~l~~~~i~l~~~~-SSQ~  158 (409)
T cd01556          80 NSGTTMRLLTGLLALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYPPLIGGGGLKGGEVEIPGAV-SSQF  158 (409)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCCCEEEECCCC-CCHH
T ss_conf             241217657666515883699837734258984689999998899999627975334724899505289977645-5118


Q ss_pred             CCEEHHHHHCCCCCCCCCC-CCCCCCHHHH---HHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             2000000000011222346-5454424444---66544973444113331002675286510233200232112210000
Q gi|254780458|r  177 KSVVLLAGLNTPGITEVIE-PVKTQDHMEI---ILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPL  252 (449)
Q Consensus       177 ~s~lLlA~~~~~g~t~i~~-~~~s~~~i~~---~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ssAa~~l  252 (449)
T Consensus       159 ~SalLmaa~~a~g~t~i~~~~~es~~yvd~T~~~L~~~Ga~I~~~~----~~~i~I~g~~~l~~~~~~V~~D~s~A~~~l  234 (409)
T cd01556         159 KSALLLAAPLAEGPTTIIIGELESKPYIDHTERMLRAFGAEVEVDG----YRTITVKGGQKYKGPEYTVEGDASSAAFFL  234 (409)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEECC----CEEEEECCCCCCCCCEECCCCCHHHHHHHH
T ss_conf             8799999873699579974674661199999999985798289639----819997786334675013788988999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEE-EECCCCCCCCCCCCCCCHHHCCCC
Q ss_conf             0112255653222333232222222100000134323444227870343202564-202333234644354301110111
Q gi|254780458|r  253 AAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVR-FSKIKGITISDNRLRSIVDEYPIL  331 (449)
Q Consensus       253 a~a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~-~~~l~g~~i~~~~~~~~~D~~p~L  331 (449)
T Consensus       235 ~aaalt-~~~v~i~~v~~~~~d~~~~~~L~~mG~~i~~~~~~~i--------~~~~~~~l~~~~i~---~~~~pDl~p~l  302 (409)
T cd01556         235 AAAAIT-GSEIVIKNVGLNSGDTGIIDVLKEMGADIEIGNEDTV--------VVESGGKLKGIDID---GNDIPDEAPTL  302 (409)
T ss_pred             HHHHHC-CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCEE--------EECCCCCCCCEEEC---CCCCCHHHHHH
T ss_conf             999976-9949990778321179999999987998999469789--------97358885447825---87686057999


Q ss_pred             CCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHH
Q ss_conf             2322223474100272001--24568999999997469789998895999767887666656872660488458999999
Q gi|254780458|r  332 LVISAFAEGETIIKGLAEV--MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFL  409 (449)
Q Consensus       332 avla~~a~G~t~i~gi~~l--kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHRiaMa~~  409 (449)
T Consensus       303 avla~~a~G~s~i~~~~~lr~KEsdRi~a~~~eL~k~Ga~i~~~~d~l~I~G~~~-----~~~~~~~~t~~DhR~ama~~  377 (409)
T cd01556         303 AVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDGLIIEGGPL-----KGAGVEVYTYGDHRIAMSFA  377 (409)
T ss_pred             HHHHHHCCCCEEEEECCCCCCEECCHHHHHHHHHHHCCCEEEEECCEEEEECCCC-----CCCCCEECCCCCHHHHHHHH
T ss_conf             9999856897278732011203130789999999977997999799799989887-----78851588999889999999


Q ss_pred             HHHHHCCCCEEEECCCEECCCCCCHHHHHHHC
Q ss_conf             99973599589944543027786988899865
Q gi|254780458|r  410 VMGLASEYSVVVDDYTMISTIFPDFINLMKTL  441 (449)
Q Consensus       410 i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~L  441 (449)
T Consensus       378 iaal~a~~~~~I~~~~~i~ksyp~f~~~l~~L  409 (409)
T cd01556         378 IAGLVAEGGVTIEDPECVAKSFPNFFEDLESL  409 (409)
T ss_pred             HHHHHCCCCEEEECCCEEECCCHHHHHHHHCC
T ss_conf             99986799899946637878656599998649