HHsearch alignment for GI: 254780458 and conserved domain: cd01556

>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=99.70  E-value=3.6e-16  Score=122.31  Aligned_cols=314  Identities=16%  Similarity=0.181  Sum_probs=174.4

Q ss_pred             CCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCC---CEEEEECCCCCCCCC
Q ss_conf             22001343145531033123333344654210101231274101013432220120222111---113430234443320
Q gi|254780458|r  102 GYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPN---PIVYKSPMDSVQSKS  178 (449)
Q Consensus       102 ~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~~---~~~~~~~~~S~q~~s  178 (449)
T Consensus        14 s~r~li-~aaL~~g~~~i~n~~--~~~Dv~~~~~~l~~lG~~i~~~~~~---~~i~~~~~~~~~~~~~l~~g~s--Gt~~   85 (409)
T cd01556          14 SHRALL-LAALAEGESRIENLL--DSDDTLATLEALRALGAKIEEEGGT---VEIVGGGGLGLPPEAVLDCGNS--GTTM   85 (409)
T ss_pred             HHHHHH-HHHHCCCCEEECCCC--CCHHHHHHHHHHHHCCCEEEEECCE---EEEECCCCCCCCCCHHHHHCCC--HHHH
T ss_conf             999999-999659989990489--0399999999999879989980899---9998888877787411100024--1217


Q ss_pred             EEHHHHH-CCCCCCCCCC--CCCCCC---HHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHH--HHH
Q ss_conf             0000000-0011222346--545442---4444665449734441133310026752865102332002321122--100
Q gi|254780458|r  179 VVLLAGL-NTPGITEVIE--PVKTQD---HMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSI--AFF  250 (449)
Q Consensus       179 ~lLlA~~-~~~g~t~i~~--~~~s~~---~i~~~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ss--Aa~  250 (449)
T Consensus        86 R~l~~ll~~~~~~~~l~G~~~l~~RPi~~~i~-~L~~lGa~i~~~~~~~---~~~~~~~~~l~~~~i~l~~~~SSQ~~Sa  161 (409)
T cd01556          86 RLLTGLLALQGGDSVLTGDESLRKRPMGRLVD-ALRQLGAEIEGREGGG---YPPLIGGGGLKGGEVEIPGAVSSQFKSA  161 (409)
T ss_pred             HHHHHHHCCCCCEEEEECCHHHCCCCCHHHHH-HHHHCCCEEEECCCCC---CEEEECCCCCCCCEEEECCCCCCHHHHH
T ss_conf             65766651588369983773425898468999-9998899999627975---3347248995052899776455118879


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCHHCCCCCCCCCCCCEEEEECCCCCEEEEE-ECCCCCCCCCCCCCCCHHH
Q ss_conf             000112255653222333232222-222-1000001343234442278703432025642-0233323464435430111
Q gi|254780458|r  251 PLAAALLIPGSDIKLLNVLTNPLR-VGI-IDILREMGADITLSNSRIESGENIADIRVRF-SKIKGITISDNRLRSIVDE  327 (449)
Q Consensus       251 ~la~a~l~~g~~i~i~n~~~~~~q-~~~-ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~-~~l~g~~i~~~~~~~~~D~  327 (449)
T Consensus       162 lLmaa~~a~g-~t~i~~~~~es~~yvd~T~~~L~~~Ga~I~~~~~~--------~i~I~g~~~l~~~~~~V--~~D~s-~  229 (409)
T cd01556         162 LLLAAPLAEG-PTTIIIGELESKPYIDHTERMLRAFGAEVEVDGYR--------TITVKGGQKYKGPEYTV--EGDAS-S  229 (409)
T ss_pred             HHHHHHHCCC-CEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCE--------EEEECCCCCCCCCEECC--CCCHH-H
T ss_conf             9999873699-57997467466119999999998579828963981--------99977863346750137--88988-9


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC-CEEEEECCCCCCCCCCCCCCEEECCCCHHHHH
Q ss_conf             01112322223474100272001245689999999974697899988-95999767887666656872660488458999
Q gi|254780458|r  328 YPILLVISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREG-DYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAM  406 (449)
Q Consensus       328 ~p~Lavla~~a~G~t~i~gi~~lkesdRi~~~~~~L~~~G~~~~~~~-d~l~I~G~~~~~~~~~~~~~~v~s~~DHRiaM  406 (449)
T Consensus       230 A~~~l~aaalt~~~v~i~~v~~--~~~d-~~~~~~L~~mG~~i~~~~~~~i~~~~~~~l~~~~i~----~~~~pD--l~p  300 (409)
T cd01556         230 AAFFLAAAAITGSEIVIKNVGL--NSGD-TGIIDVLKEMGADIEIGNEDTVVVESGGKLKGIDID----GNDIPD--EAP  300 (409)
T ss_pred             HHHHHHHHHHCCCEEEEECCCC--CCCH-HHHHHHHHHCCCEEEEECCCEEEECCCCCCCCEEEC----CCCCCH--HHH
T ss_conf             9999999997699499907783--2117-999999998799899946978997358885447825----876860--579


Q ss_pred             HHHHHHHHCCCCEEEECCCEECC--C--CCCHHHHHHHCCCEEEEE
Q ss_conf             99999973599589944543027--7--869888998659789885
Q gi|254780458|r  407 SFLVMGLASEYSVVVDDYTMIST--I--FPDFINLMKTLGARIEWV  448 (449)
Q Consensus       407 a~~i~gl~~~~~~~I~~~~~v~k--s--yP~F~~~l~~LGa~ie~~  448 (449)
T Consensus       301 ~lavla~~a~G~s~i~~~~~lr~KEsdRi~a~~~eL~k~Ga~i~~~  346 (409)
T cd01556         301 TLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEET  346 (409)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCEECCHHHHHHHHHHHCCCEEEEE
T ss_conf             9999998568972787320112031307899999999779979997