HHsearch alignment for GI: 254780458 and conserved domain: pfam01137
>pfam01137 RTC RNA 3'-terminal phosphate cyclase. RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids.
Probab=93.19 E-value=0.18 Score=28.34 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=71.4
Q ss_pred HHHHHHHCCCCEEEECCCCHHH-------HHHHHHHHHHC-CCEEE-EECCEEEEEECCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 9999974498499977980289-------99999999984-97999-989989998126887568531055033333220
Q gi|254780458|r 34 SIILGGIAAGETQIRGVLESDD-------VLNTMRMMHYL-GARFT-KKDREWIVQGVGNGCLLSPEYPLDFKGFDMGYG 104 (449)
Q Consensus 34 aLl~AaLa~g~s~i~n~~~s~D-------v~~~l~al~~L-G~~i~-~~~~~~~i~g~g~~~~~~~~~~i~~~~sgt~~r 104 (449)
T Consensus 16 alaLS~ltgkpi~I~nIR~~R~~PGL~~qhl~~i~ll~~i~~~~~~g~~~gst~l~F~-Pg~i~gg~~~~d~~tagsi~L 94 (330)
T pfam01137 16 ALALSALTGKPVRIVNIRANRPNPGLRRQHLSAVRALAKITNAEVEGAEVGSTELEFR-PGTIRGGDYRVDIGTAGSITL 94 (330)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEC-CCCCCCCEEEEECCCCCHHHH
T ss_conf 9999997689779983689987988579999999999997097373025485799982-874568707996688741689
Q ss_pred EE---EEECCCCCC--EEEECCCCCC-CCCCCCCEE----EEEEECCCCEEE--CCCCCCC
Q ss_conf 01---343145531--0331233333-446542101----012312741010--1343222
Q gi|254780458|r 105 LM---MGVVGVYDF--QTFFKGRAEI-LQPTIESLL----APLYQMGVQVKL--PEDKRLP 153 (449)
Q Consensus 105 ~l---~~~l~~~~~--~~~i~G~~~l-~~Rpi~~li----~~L~~lGa~i~~--~~~~~~P 153 (449)
T Consensus 95 ~lq~llp~l~f~~~~~~l~l~GgT~v~~sPsvDy~~~v~lP~l~~~G~~~~l~i~kRGfyP 155 (330)
T pfam01137 95 VLQTLLPLLLFAKGPSRITLKGGTDVPWAPPVDYIRNVTLPLLEKFGIEGELKVLRRGFYP 155 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 9999999997579975999986679999989899999999999973996699999656788