Query gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 449
No_of_seqs 127 out of 4165
Neff 7.9
Searched_HMMs 23785
Date Mon May 30 11:51:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780458.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqc_A 3-phosphoshikimate 1-ca 100.0 0 0 752.4 27.3 440 8-447 3-444 (445)
2 1rf6_A 5-enolpyruvylshikimate- 100.0 0 0 690.0 22.6 416 13-441 5-424 (427)
3 3nvs_A 3-phosphoshikimate 1-ca 100.0 0 0 655.2 24.9 410 8-441 26-448 (450)
4 1ejd_A MURA, EPT, UDP-N-acetyl 100.0 0 0 630.4 18.0 410 9-449 3-417 (419)
5 2o0b_A 3-phosphoshikimate 1-ca 100.0 0 0 622.2 22.2 399 13-443 8-424 (450)
6 2yvw_A UDP-N-acetylglucosamine 100.0 0 0 584.2 20.2 408 9-449 12-423 (425)
7 2o0b_A 3-phosphoshikimate 1-ca 99.7 3.7E-17 1.6E-21 127.3 11.0 303 114-448 41-362 (450)
8 1ejd_A MURA, EPT, UDP-N-acetyl 99.7 3.7E-16 1.6E-20 120.8 10.0 305 36-372 100-415 (419)
9 3nvs_A 3-phosphoshikimate 1-ca 99.6 9.2E-15 3.9E-19 111.9 14.8 329 93-448 39-387 (450)
10 2pqc_A 3-phosphoshikimate 1-ca 99.6 1E-14 4.3E-19 111.7 11.2 320 28-372 94-444 (445)
11 1rf6_A 5-enolpyruvylshikimate- 99.6 1.4E-14 5.9E-19 110.8 11.6 34 40-73 104-139 (427)
12 2yvw_A UDP-N-acetylglucosamine 99.5 5.7E-13 2.4E-17 100.5 11.3 80 277-372 340-421 (425)
13 1mp9_A Tata-binding protein; t 47.0 9.9 0.00042 15.8 2.5 39 332-370 150-189 (198)
14 1q7e_A Hypothetical protein YF 45.1 10 0.00043 15.7 2.3 13 59-71 24-36 (428)
15 1uou_A Thymidine phosphorylase 43.9 3.8 0.00016 18.5 -0.1 94 32-147 65-163 (474)
16 1ais_A TBP, protein (tata-bind 41.9 9.1 0.00038 16.1 1.6 34 332-365 146-180 (182)
17 1x9z_A DNA mismatch repair pro 39.8 15 0.00061 14.8 4.0 11 206-216 79-89 (188)
18 2elc_A Trp D, anthranilate pho 37.9 7.9 0.00033 16.5 0.8 97 32-147 35-132 (329)
19 2bvf_A 6-hydroxy-D-nicotine ox 37.1 16 0.00067 14.5 3.0 117 10-144 2-125 (459)
20 1ytb_A Protein (tata binding p 34.6 14 0.0006 14.8 1.7 19 332-350 142-160 (180)
21 3gmg_A Uncharacterized protein 34.1 18 0.00075 14.2 3.0 32 360-391 126-158 (170)
22 2bpq_A Anthranilate phosphorib 33.1 19 0.00078 14.1 3.4 94 34-146 64-160 (373)
23 2z8u_A Tata-box-binding protei 31.7 15 0.00064 14.7 1.4 34 332-365 150-187 (188)
24 2ftx_B Hypothetical 24.6 kDa p 31.4 20 0.00083 13.9 2.4 25 56-80 9-33 (64)
25 2rfv_A Methionine gamma-lyase; 29.4 21 0.0009 13.7 3.0 12 205-216 122-133 (398)
26 3eik_A Tata-box-binding protei 27.2 23 0.00098 13.5 1.8 18 332-349 180-197 (218)
27 3can_A Pyruvate-formate lyase- 26.8 9 0.00038 16.1 -0.4 40 114-153 4-44 (182)
28 1pff_A Methionine gamma-lyase; 26.2 24 0.001 13.4 3.1 43 31-74 25-69 (331)
29 2gci_A Probable alpha-methylac 26.0 25 0.001 13.3 2.2 13 59-71 22-34 (360)
30 1rm1_A Tata-box binding protei 23.1 25 0.001 13.3 1.2 18 332-349 202-219 (240)
31 2fv4_B Hypothetical 24.6 kDa p 22.6 28 0.0012 12.9 2.4 24 57-80 23-46 (77)
32 1o17_A Anthranilate PRT, anthr 22.3 12 0.00049 15.4 -0.6 93 33-146 39-131 (345)
33 3ke2_A Uncharacterized protein 21.8 11 0.00048 15.5 -0.7 23 125-147 45-67 (117)
34 1gc0_A Methionine gamma-lyase; 21.3 30 0.0013 12.8 2.5 11 136-146 124-134 (398)
35 2jug_A TUBC protein; docking d 20.4 32 0.0013 12.6 4.6 25 359-383 10-34 (78)
No 1
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=100.00 E-value=0 Score=752.41 Aligned_cols=440 Identities=50% Similarity=0.866 Sum_probs=421.7
Q ss_pred EEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCC
Q ss_conf 15897068853699981842228999999997449849997798028999999999984979999899899981268875
Q gi|254780458|r 8 STIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCL 87 (449)
Q Consensus 8 ~~~~~~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~ 87 (449)
-++++|++++|+|+|++|||||++||+|++|||++|+|+|+|+++++||..|+++|++||++|++++++++|+|.+.+.+
T Consensus 3 ~~~~~~~~~~L~G~v~~pgSKs~~~R~L~~aal~~g~s~i~n~~~~~Dv~~m~~~L~~lG~~i~~~~~~~~I~g~~~~~~ 82 (445)
T 2pqc_A 3 RPATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGDTWIIDGVGNGGL 82 (445)
T ss_dssp CCEEEECCSCCEEEEECCBCHHHHHHHHHHHHHSEEEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEEEECTTCC
T ss_pred CCEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCC
T ss_conf 98772799970699976881899999999999759999992698239999999999977998999799999993688876
Q ss_pred CCCCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCCCEEE
Q ss_conf 68531055033333220013431455310331233333446542101012312741010134322201202221111134
Q gi|254780458|r 88 LSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVY 167 (449)
Q Consensus 88 ~~~~~~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~~~~~~ 167 (449)
..|+..+|+++||+++||++++++..++.+.++|+++|++|||++|+++|++||+++++.+++++|+.|+|+...+++.+
T Consensus 83 ~~~~~~i~~g~sgt~~r~l~~l~~~~~~~~~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~lPi~i~g~~~~~~~~i 162 (445)
T 2pqc_A 83 LAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGPKTPTPITY 162 (445)
T ss_dssp CCCSSCEECTTCHHHHHHHHHHHHTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEEEEEECCSSCCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCCCCEEE
T ss_conf 68626778765567888765554057843997586341641389999999854745760579846779986688866799
Q ss_pred EECCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 30234443320000000000112223465454424444665449734441133310026752865102332002321122
Q gi|254780458|r 168 KSPMDSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSI 247 (449)
Q Consensus 168 ~~~~~S~q~~s~lLlA~~~~~g~t~i~~~~~s~~~i~~~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ss 247 (449)
..+.+|||+++++|||++.+++.++++++..+++|++.+|+.||.++.++.+..+.++|+|+|+++|.+.+|.||+|||+
T Consensus 163 ~~~~~S~~~~s~lllaa~~~~g~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~v~~D~s~ 242 (445)
T 2pqc_A 163 RVPMASAQVKSAVLLAGLNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGDPSS 242 (445)
T ss_dssp ECSSSCHHHHHHHHHHHHTSSSEEEEEESSCCCCHHHHHHHHTTCCEEEEECTTSCEEEEEETTCCCBCCEEECCBCHHH
T ss_pred ECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCHHH
T ss_conf 81565499999999523148995899588777779999999852665421158881699987655568847883898789
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 10000011225565322233323222222210000013432344422787034320256420233323464435430111
Q gi|254780458|r 248 AFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDE 327 (449)
Q Consensus 248 Aa~~la~a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~~~~~~~~D~ 327 (449)
|+||+++|++++|+++++.|+..++.|.+++++|++||+++++.++++..++...++.++...|++++++..++|+++|+
T Consensus 243 aa~~~~aaa~~~g~~i~i~n~~~~~~~~~~l~iL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~p~~~D~ 322 (445)
T 2pqc_A 243 TAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDE 322 (445)
T ss_dssp HHHHHHHHHHSTTCEEEEEEEECCGGGCHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEECCCCBCCEECGGGGGGTGGG
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf 99999999976998599818886620789999999859979960454764860267887631456631574559975889
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHHH
Q ss_conf 01112322223474100272001--2456899999999746978999889599976788766665687266048845899
Q gi|254780458|r 328 YPILLVISAFAEGETIIKGLAEV--MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVA 405 (449)
Q Consensus 328 ~p~Lavla~~a~G~t~i~gi~~l--kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHRia 405 (449)
+|+|+++|++|+|+|+|+|++|+ |||||++++.++|+|||+++++++|+++|+|.+.+++....+++.++||+|||+|
T Consensus 323 ~p~la~~a~~a~g~s~i~gi~~lr~kEsdRi~~~~~eL~k~G~~i~~~~d~l~I~g~~~~~~~~~~~g~~i~t~~DHRia 402 (445)
T 2pqc_A 323 YPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATHLDHRIA 402 (445)
T ss_dssp HHHHHHHHTTSBSEEEECCCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSCEEEECCTTCTTCSCTTCCEECCTTCHHHH
T ss_pred HHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHHH
T ss_conf 99999999847997699122673010017899999999977987998388699968866656667767678589978999
Q ss_pred HHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHCCCEEEE
Q ss_conf 999999973599589944543027786988899865978988
Q gi|254780458|r 406 MSFLVMGLASEYSVVVDDYTMISTIFPDFINLMKTLGARIEW 447 (449)
Q Consensus 406 Ma~~i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~LGa~ie~ 447 (449)
|++++|||+++++++|+|++||+||||+||++|++|||+||.
T Consensus 403 ma~~iaal~~~g~~~I~~~~~v~ksyP~f~~~l~~LGa~ie~ 444 (445)
T 2pqc_A 403 MSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGLGAKIEL 444 (445)
T ss_dssp HHHHHHHTTSSSCEEESCCTTGGGTCTTHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHCCCEEEE
T ss_conf 999999986899899956807967046099999957988995
No 2
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=100.00 E-value=0 Score=690.03 Aligned_cols=416 Identities=31% Similarity=0.495 Sum_probs=381.1
Q ss_pred ECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 06885369998184222899999999744984999779802899999999998497999989989998126887568531
Q gi|254780458|r 13 SYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLLSPEY 92 (449)
Q Consensus 13 ~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~~~~~ 92 (449)
.++++|+|+|++|||||+|||+|++|+|++|+|+|+|+++|+||..|+++||+||++|++++++++|+|.|...+..|+.
T Consensus 5 ~~~~~l~G~v~~pgSKS~s~R~Li~aaLa~g~s~i~n~~~s~Dv~~~i~~L~~lG~~i~~~~~~~~i~g~g~~~~~~~~~ 84 (427)
T 1rf6_A 5 TNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQN 84 (427)
T ss_dssp CCCCCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEECCCSSCCCCCSS
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCHH
T ss_conf 67877079998379689999999999976998999279903999999999997899899649999999068877678626
Q ss_pred EEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEC-CCCCCCCEEECCCCCCCEEEEECC
Q ss_conf 0550333332200134314553103312333334465421010123127410101-343222012022211111343023
Q gi|254780458|r 93 PLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLP-EDKRLPLVLHGPRTPNPIVYKSPM 171 (449)
Q Consensus 93 ~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~-~~~~~Pi~I~g~~~~~~~~~~~~~ 171 (449)
.+|+++||+++||++++++..++.+.++|+++|++|||++|+++|++||+++++. +++++|+.++|+...+++.+..+.
T Consensus 85 ~i~~g~sgt~~r~l~~~~a~~~~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g~~~~~~~~~~~~~ 164 (427)
T 1rf6_A 85 ALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPI 164 (427)
T ss_dssp CEECTTCHHHHHHHHHHGGGCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEECCTTCCCCEEECSS
T ss_pred HHHHCCCCEEEECCCCCCCCCCCEECCCCCHHHHCCCCCHHHHHHHHCCCEEEECCCCCCCEEECCCCCCCCCEEEECCC
T ss_conf 67753443110002221112143334668866626532012345774284798313556301211477887555995357
Q ss_pred CCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 44433200000000001122234654544244446654497344411333100267528651023320023211221000
Q gi|254780458|r 172 DSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFP 251 (449)
Q Consensus 172 ~S~q~~s~lLlA~~~~~g~t~i~~~~~s~~~i~~~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ssAa~~ 251 (449)
+|||++++||||++..+|.+.+.++..+.+++..+|++||+++.+.. ..+.|+++++|.+.+|.||+|||+|+||
T Consensus 165 ~S~~~~s~Lllaa~~~~g~~~i~~~~~~~~~t~~~L~~~G~~i~~~~-----~~i~i~~~~~~~~~~~~Vp~D~s~a~~~ 239 (427)
T 1rf6_A 165 ASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDG-----KKITVQGPQKLTGQKVVVPGDISSAAFW 239 (427)
T ss_dssp CCHHHHHHHHHHHTTSSEEEEEECSSCCCCHHHHHHHHTTCCCEEET-----TEEEEEECCCCBCCEEECCBCHHHHHHH
T ss_pred CCHHHHHHHHHCEEECCCCEEEECCCCHHHHHHHHHHHCCCCCCCCC-----EEEEECCCEEECCCEEEECCCHHHHHHH
T ss_conf 77755110211012158844563234105678999986298421231-----1899875213267469917977889999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 00112255653222333232222222100000134323444227870343202564202333234644354301110111
Q gi|254780458|r 252 LAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPIL 331 (449)
Q Consensus 252 la~a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~~~~~~~~D~~p~L 331 (449)
+++|++.+|++|+++|++.++.|.+++++|++||+.+++.+.+.. .......+....|++++++..++|+++|++|++
T Consensus 240 l~~aal~~g~~i~i~n~~~~~~~~~~~~~l~~~g~~i~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p~~~d~~p~l 317 (427)
T 1rf6_A 240 LVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPV--AKSATLIVESSDLKGTEICGALIPRLIDELPII 317 (427)
T ss_dssp HHHHHHSTTEEEEEEEEECCTTTCHHHHHHHHTTCEEEEEEEETT--TTEEEEEEECCCCBCCEECTTSGGGTGGGHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 999996699879987789652247898865422541120243222--124532021267442223444587633443355
Q ss_pred CCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHH
Q ss_conf 2322223474100272001--24568999999997469789998895999767887666656872660488458999999
Q gi|254780458|r 332 LVISAFAEGETIIKGLAEV--MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFL 409 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~l--kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHRiaMa~~ 409 (449)
++++++|+|+|+|+|++|+ |||||++++.++|+|||+++++++|+++|+|++. .+++.++||+|||+|||++
T Consensus 318 a~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~eL~k~G~~i~~~~d~l~I~G~~~------l~~~~v~t~~DHR~ama~~ 391 (427)
T 1rf6_A 318 ALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSA------LHGARVNTFGDHRIGMMTA 391 (427)
T ss_dssp HHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECCC------CCCEEEECTTCHHHHHHHH
T ss_pred HHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCC------CCCCEEECCCCHHHHHHHH
T ss_conf 5652035773255006777878757999999999977997999899999979998------8578778888099999999
Q ss_pred HHHHH-CCCCEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 99973-599589944543027786988899865
Q gi|254780458|r 410 VMGLA-SEYSVVVDDYTMISTIFPDFINLMKTL 441 (449)
Q Consensus 410 i~gl~-~~~~~~I~~~~~v~ksyP~F~~~l~~L 441 (449)
++|+. ++++++|+|++||+||||+||++|++|
T Consensus 392 i~al~~~~g~~~I~~~~~v~ksyP~F~~~l~~L 424 (427)
T 1rf6_A 392 IAALLVADGEVELDRAEAINTSYPSFFDDLESL 424 (427)
T ss_dssp HHHHTCSSSCEEEETGGGGGGTCTTHHHHHHHH
T ss_pred HHHHHCCCCCEEECCCCEEECCCHHHHHHHHHH
T ss_conf 999865899599827837968764199999997
No 3
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A
Probab=100.00 E-value=0 Score=655.21 Aligned_cols=410 Identities=20% Similarity=0.313 Sum_probs=360.3
Q ss_pred EEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECC--EEEEEECCCC
Q ss_conf 15897068853699981842228999999997449849997798028999999999984979999899--8999812688
Q gi|254780458|r 8 STIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDR--EWIVQGVGNG 85 (449)
Q Consensus 8 ~~~~~~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~--~~~i~g~g~~ 85 (449)
..|+++..++|+|+|++|||||+|||+|++|+|++|+|+|+|+++++||..|+++|++||++|+++++ ++.++|.|..
T Consensus 26 ~~~~i~p~~~l~G~v~vp~sKS~s~R~li~aaLa~g~s~I~n~~~~~Dv~~~l~~l~~LG~~i~~~~~~~~i~i~g~g~~ 105 (450)
T 3nvs_A 26 ESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQA 105 (450)
T ss_dssp CEEEECCCCCBCEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSSCEEEECCSSC
T ss_pred EEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCC
T ss_conf 27998079806899991780999999999999769989992499078999999999986997999579259999816876
Q ss_pred CCCCCCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEC-CCCCCCCEEECCCCCCC
Q ss_conf 75685310550333332200134314553103312333334465421010123127410101-34322201202221111
Q gi|254780458|r 86 CLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLP-EDKRLPLVLHGPRTPNP 164 (449)
Q Consensus 86 ~~~~~~~~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~-~~~~~Pi~I~g~~~~~~ 164 (449)
....++..+++++||+++||++++++..++.+.++|+++|++|||++|+++|++|||+|++. +++++|++|+|+...++
T Consensus 106 ~~~~~~~~i~~g~SGt~lrll~~l~~~~~~~v~~~G~~sL~~Rp~~~l~~~L~~lGa~i~~~~~~~~~P~~i~g~~l~~~ 185 (450)
T 3nvs_A 106 FHTTQPLELFLGNAGTAMRPLAAALCLGQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAG 185 (450)
T ss_dssp CBCSSCEEEECTTCHHHHHHHHHHTTSSBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCEEEECCCCCSE
T ss_pred CCCCCCHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECCCCCCC
T ss_conf 56788545431355778888876311456349705855553204878999999769899981157734169887876687
Q ss_pred EEEEECCCCCCCCCEEHHHHHCCCCCCCCC--CCCCCCCHHHHH---HHHCCCEEEEECCCCCEEEEEECCCCC-CCCCC
Q ss_conf 134302344433200000000001122234--654544244446---654497344411333100267528651-02332
Q gi|254780458|r 165 IVYKSPMDSVQSKSVVLLAGLNTPGITEVI--EPVKTQDHMEII---LKEFGVDLLIKSDTIEDYSVRIEGRKR-ISGCN 238 (449)
Q Consensus 165 ~~~~~~~~S~q~~s~lLlA~~~~~g~t~i~--~~~~s~~~i~~~---L~~fG~~i~~~~~~~~~~~i~i~g~~~-l~~~~ 238 (449)
........|+|++|++|||++.+++.+++. ++..|+||+++| |++||+++...+. ..+.++++++ +.|.+
T Consensus 186 ~~~i~~~~SsQ~~salLlaa~~~~g~t~I~~~~~~~s~p~i~~t~~~l~~~G~~i~~~~~----~~~~i~~~~~~~~~~~ 261 (450)
T 3nvs_A 186 TVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDY----QEFVIPAGQSYVSPGQ 261 (450)
T ss_dssp EEEECCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEETT----TEEEECTTCCCBCCSE
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEECCCC----CEEEEECCCCCCCCEE
T ss_conf 389787553288889998887358857997057667774899999987426732531687----2289964743447835
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 0023211221000001122556532223332322222--22100000134323444227870343202564202333234
Q gi|254780458|r 239 LKIPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLRV--GIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITI 316 (449)
Q Consensus 239 ~~Ip~D~ssAa~~la~a~l~~g~~i~i~n~~~~~~q~--~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i 316 (449)
|.||+|||+|+||+++++++ |++++++|+..++.|. .|+++|++||+++++.++++. ...+.++++++
T Consensus 262 ~~v~~D~s~Aa~~~~aa~l~-~g~i~i~~~~~~~~q~~~~~l~il~~mG~~i~~~~~~~~---------~~~~~l~~~~~ 331 (450)
T 3nvs_A 262 FLVEGDASSASYFLAAAAIK-GGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVI---------ARRGELNAVDL 331 (450)
T ss_dssp EECCBCHHHHHHHHHHHHHH-CSEEEEESCCTTCSCGGGGHHHHHHHHTCEEEECSSEEE---------EECCCCBCCEE
T ss_pred EEECCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCEEE---------EECCCCCCCCC
T ss_conf 88389988999999999974-995899377788654457999999976985996597799---------50687762346
Q ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCC
Q ss_conf 6443543011101112322223474100272001--24568999999997469789998895999767887666656872
Q gi|254780458|r 317 SDNRLRSIVDEYPILLVISAFAEGETIIKGLAEV--MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGH 394 (449)
Q Consensus 317 ~~~~~~~~~D~~p~Lavla~~a~G~t~i~gi~~l--kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~ 394 (449)
+ +.++||++|+|+++|++++|+|+|+|++|+ |||||+.++.++|++||+++++++|+++|+|+.. ..++
T Consensus 332 d---~~~~pD~~p~l~vla~~a~g~s~i~gi~~lr~KEsdRl~~~~~~L~klG~~i~~~~d~l~I~G~~~------~~~~ 402 (450)
T 3nvs_A 332 D---FNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTK------LIHA 402 (450)
T ss_dssp E---CTTCTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECCSS------CCCC
T ss_pred C---CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCC------CCCC
T ss_conf 8---456983677899999725998430455553013026899999999977998999799999979987------7676
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 66048845899999999973599589944543027786988899865
Q gi|254780458|r 395 MVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPDFINLMKTL 441 (449)
Q Consensus 395 ~v~s~~DHRiaMa~~i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~L 441 (449)
.|+||+|||++|++++||| +.++++|+|++||+||||+||++|++|
T Consensus 403 ~v~s~~DHR~ama~~iaal-~~~~~~I~~~~~i~~syP~F~~~l~~L 448 (450)
T 3nvs_A 403 AIDTYDDHRMAMCFSLVAL-SDTPVTINDPKCTSKTFPDYFDKFAQL 448 (450)
T ss_dssp EECCTTCHHHHHHHHGGGG-SSSCEEEESGGGGGGTCTTHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHH-CCCCEEEECCCEECCCCCCHHHHHHHH
T ss_conf 5778987899999999998-499989956650038671399999986
No 4
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 3lth_A* 3kqa_A* 3kqj_A* 2z2c_A* 1uae_A* 3iss_A* 3kr6_A* 1a2n_A* 2rl1_A* 2rl2_A*
Probab=100.00 E-value=0 Score=630.36 Aligned_cols=410 Identities=19% Similarity=0.180 Sum_probs=334.3
Q ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCC
Q ss_conf 58970688536999818422289999999974498499977980289999999999849799998998999812688756
Q gi|254780458|r 9 TIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLL 88 (449)
Q Consensus 9 ~~~~~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~ 88 (449)
.+.++++++|+|+|++|||||+|||+|+||+|++|+|+|+|+++|+||.+|++|||+||++|++++ ++.|.+.+.+.+.
T Consensus 3 ~~~i~g~~~L~G~i~ipgsKS~s~RaLi~aaLa~g~s~I~n~l~s~D~~~~i~~l~~LG~~I~~~~-~~~i~~~~~~~~~ 81 (419)
T 1ejd_A 3 KFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDG-SVWIDASNVNNFS 81 (419)
T ss_dssp EEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESS-SEEEECTTCCCCE
T ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEECC-EEEEECCCCCCCC
T ss_conf 599958893587997888389999999999973998999549902999999999997899999899-7999889978776
Q ss_pred CCCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCCCEEEE
Q ss_conf 85310550333332200134314553103312333334465421010123127410101343222012022211111343
Q gi|254780458|r 89 SPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYK 168 (449)
Q Consensus 89 ~~~~~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~~~~~~~ 168 (449)
.|.. +..++++++++++..+++.....+.++|+++|++|||++|+++|++|||++++. ++.+|+.+.|+...+ .+.
T Consensus 82 ~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~l~Gd~sl~~RPm~~li~~L~~lGa~i~~~-~g~~~~~i~g~l~g~--~~~ 157 (419)
T 1ejd_A 82 APYD-LVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLE-EGYVKASVNGRLKGA--HIV 157 (419)
T ss_dssp ECHH-HHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEE-TTEEEEECSSSCBCC--EEE
T ss_pred CCHH-HHHCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEC-CCCEEEECCCCCCCC--EEE
T ss_conf 6566-762466310020025664287179843885468897478999998678779960-792555037886674--696
Q ss_pred ECCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHH---HHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 0234443320000000000112223465454424444---6654497344411333100267528651023320023211
Q gi|254780458|r 169 SPMDSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEI---ILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDS 245 (449)
Q Consensus 169 ~~~~S~q~~s~lLlA~~~~~g~t~i~~~~~s~~~i~~---~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ 245 (449)
.+.+|||+++++|+|++.+++.+++. +..+++|+++ +|+.||++|+..+ ...+.++|+++|.|.+|.||+||
T Consensus 158 ~~~~Ssq~~s~llla~~~~~g~~~i~-~~~~~~~i~~t~~~l~~~G~~i~~~~----~~~~~i~g~~~~~~~~~~V~~D~ 232 (419)
T 1ejd_A 158 MDKVSVGATVTIMSAATLAEGTTIIE-NAAREPEIVDTANFLVALGAKISGQG----TDRITIEGVERLGGGVYRVLPDR 232 (419)
T ss_dssp CSSCCHHHHHHHHHHHTTSBSEEEEE-TCCCCHHHHHHHHHHHHTTCEEECTT----SSEEEEECCSCBCCEEEECCBCH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCCCHHHHHHHHHHCCEEEEECC----CEEEEEECCCCCCCCCEEECCCC
T ss_conf 58775899999998776166962897-25876659899888985963999638----71999907501579735958881
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCH
Q ss_conf 22100000112255653222333232222222100000134323444227870343202564202333234644354301
Q gi|254780458|r 246 SIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIV 325 (449)
Q Consensus 246 ssAa~~la~a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~~~~~~~~ 325 (449)
|+|+||+++|++. |++|++.|+..++.| .++++|++||+++++.++++... .....+++ ++ +...|
T Consensus 233 ssaa~~~~aa~l~-~~~i~~~~~~~~~~~-~~~~il~~mg~~i~~~~~~~~v~-------~~~~~~~~--id---~~~~~ 298 (419)
T 1ejd_A 233 IETGTFLVAAAIS-GGKIVCRNAQPDTLD-AVLAKLREAGADIETGEDWISLD-------MHGKRPKA--VT---VRTAP 298 (419)
T ss_dssp HHHHHHHHHHHTT-TCEEEEESCCGGGCH-HHHHHHHHTTCEEEECSSEEEEE-------CTTCCCBC--CC---EECCS
T ss_pred HHHHHHHHHHHCC-CCEEEECCCCHHHHH-HHHHHHHHCCCEEEECCCEEEEE-------EECCCCCC--EE---EECCC
T ss_conf 7899999998266-986999387868878-99999997599899648869998-------50564454--58---62785
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHH
Q ss_conf 110111232222347410027200--124568999999997469789998895999767887666656872660488458
Q gi|254780458|r 326 DEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYR 403 (449)
Q Consensus 326 D~~p~Lavla~~a~G~t~i~gi~~--lkesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHR 403 (449)
|..|+++++++++.+.+.++|..+ .|||||+.+++++|++||+++++++|+++|+|.+.+ .++.+++ +|||
T Consensus 299 d~~~~~~~~~~~~~~~~~~~G~~~~~~ke~dr~~~~~~~L~klG~~v~~~~d~l~I~G~~~l------~g~~v~s-~DHR 371 (419)
T 1ejd_A 299 HPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKL------SGAQVMA-TDLR 371 (419)
T ss_dssp TTSCCGGGHHHHHHHHHTSBSEEEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCSCC------BCCEECC-SSHH
T ss_pred CCCCCHHHHHHHHHHHEEECCCEEEEEEEEECHHHHHHHHHHCCCEEEEECCEEEEECCCCC------CCCEEEC-CCHH
T ss_conf 66641235677641212813632999999857899999999579979998999999899977------3872713-8089
Q ss_pred HHHHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHCCCEEEEEC
Q ss_conf 9999999997359958994454302778698889986597898859
Q gi|254780458|r 404 VAMSFLVMGLASEYSVVVDDYTMISTIFPDFINLMKTLGARIEWVD 449 (449)
Q Consensus 404 iaMa~~i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~LGa~ie~~~ 449 (449)
|||||++|||.++++++|+|++||+||||+||++|++|||+|||||
T Consensus 372 iaMa~ava~l~~~g~~~I~~~~~v~kSyP~F~~~l~~LGa~Ie~v~ 417 (419)
T 1ejd_A 372 ASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVK 417 (419)
T ss_dssp HHHHHHHHHHHSBEEEEECCTHHHHHHSSSHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEECCCEEEECCCCCHHHHHHHCCCEEEEEC
T ss_conf 9999999998399939984713897864248999996698999970
No 5
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=100.00 E-value=0 Score=622.16 Aligned_cols=399 Identities=21% Similarity=0.284 Sum_probs=337.6
Q ss_pred ECCCCEEEEEECCCCHHHHHHHHHHHHHC----CCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCC
Q ss_conf 06885369998184222899999999744----98499977980289999999999849799998998999812688756
Q gi|254780458|r 13 SYSCGLQGTICIPGDRSLSHFSIILGGIA----AGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLL 88 (449)
Q Consensus 13 ~~~~~L~G~i~vp~SKs~s~RaLl~AaLa----~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~ 88 (449)
..|++|+|+|++|||||+|||+|++|||+ +|+|+|+|++.++||..|+++|++||++|+++++++.|+|.+ ..
T Consensus 8 ~~p~~l~G~i~vpgsKS~s~RalilaaLa~~~~~G~s~i~n~~~~~Dv~~~l~~L~~LG~~i~~~~~~~~I~g~~---~~ 84 (450)
T 2o0b_A 8 TAPTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGVGSELTVSGRI---EP 84 (450)
T ss_dssp CCSSCCEEEECCCBCHHHHHHHHHHHHHHHHTTCCCEEEETCCCSHHHHHHHHHHHHTTCEEECSSSCEEEESCC---CC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCC---CC
T ss_conf 999987889982876799999999998627466992998989906999999999998799899879999996886---78
Q ss_pred CCCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCC--CCCCEE
Q ss_conf 853105503333322001343145531033123333344654210101231274101013432220120222--111113
Q gi|254780458|r 89 SPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPR--TPNPIV 166 (449)
Q Consensus 89 ~~~~~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~--~~~~~~ 166 (449)
.|...+|+++|||++||++++++..++.+.++|+++|++|||++|+++|++|||+|+. +.+|+.+.++. .++.+.
T Consensus 85 ~~~~~l~~g~Sgt~~rll~~l~a~~~~~~~l~G~~sL~~RP~~~l~~~L~~lGa~i~~---~~~p~~i~~~~~l~~~~i~ 161 (450)
T 2o0b_A 85 GPGARVDCGLAGTVLRFVPPLAALGSVPVTFDGDQQARGRPIAPLLDALRELGVAVDG---TGLPFRVRGNGSLAGGTVA 161 (450)
T ss_dssp CTTCEEECTTCHHHHHHHHHHHTTSSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEEC---SSSSEEEECCSCCCCEEEE
T ss_pred CCCCCEEHHCCHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCHHHHHHHHHCCCEEEC---CCCCEEEECCCCCCCCEEE
T ss_conf 9876322110277999999999626736996587675159855887676514807866---8575578558886697687
Q ss_pred EEECCCCCCCCCEEHHHH-HCCCCCCCC--CCCCCCCCHHHH---HHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 430234443320000000-000112223--465454424444---66544973444113331002675286510233200
Q gi|254780458|r 167 YKSPMDSVQSKSVVLLAG-LNTPGITEV--IEPVKTQDHMEI---ILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLK 240 (449)
Q Consensus 167 ~~~~~~S~q~~s~lLlA~-~~~~g~t~i--~~~~~s~~~i~~---~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~ 240 (449)
++.+.+| |+.|++|||+ ....|.+.+ .++..+++|+++ +|++||++|+..+. ..+.+.+ +++.+.+|.
T Consensus 162 l~~~~sS-Q~~salLlaa~~~~~g~~~i~~~~~~~s~p~i~~t~~~L~~~G~~I~~~~~----~~~~i~~-~~~~~~~~~ 235 (450)
T 2o0b_A 162 IDASASS-QFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTP----NRWQVRP-GPVAARRWD 235 (450)
T ss_dssp ECCTTCT-HHHHHHHHHGGGSTTCEEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCST----TEEEECC-CCCCCCCEE
T ss_pred ECCCCCH-HHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECCC----CEEEECC-CEECCCCCC
T ss_conf 1587731-999899987776069964431345446750099899999877935883478----4576225-021353211
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 23211221000001122556532223332322222--2210000013432344422787034320256420233323464
Q gi|254780458|r 241 IPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLRV--GIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISD 318 (449)
Q Consensus 241 Ip~D~ssAa~~la~a~l~~g~~i~i~n~~~~~~q~--~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~ 318 (449)
||+|+|+|+||+++++++ +++|++.|++..+.|. .|+++|++||+++++.++.++... ...+++++++
T Consensus 236 v~~D~ssAa~~l~aa~i~-~~~i~i~~~~~~~~q~~~~~l~~L~~mG~~i~~~~~~~~v~~--------~~~l~~~~~~- 305 (450)
T 2o0b_A 236 IEPDLTNAVAFLSAAVVS-GGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRG--------PTGYDGFDVD- 305 (450)
T ss_dssp CCBCHHHHHHHHHHHHHH-TCEEEETTCCSSCSSCHHHHHHHHHHTTCEEEEETTEEEEEC--------CSCCCCCEEE-
T ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEECC--------CCCCCEEECC-
T ss_conf 688767899999999857-995798424323335076999999865947997188379845--------7653205316-
Q ss_pred CCCCCCHHHCCCCCCCCCCCCC--CCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCC
Q ss_conf 4354301110111232222347--4100272001--24568999999997469789998895999767887666656872
Q gi|254780458|r 319 NRLRSIVDEYPILLVISAFAEG--ETIIKGLAEV--MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGH 394 (449)
Q Consensus 319 ~~~~~~~D~~p~Lavla~~a~G--~t~i~gi~~l--kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~ 394 (449)
+..+||++|+++++|++|.+ .|+++|++|+ |||||+++++++|++||+++++++|+++|+|.+ .+++
T Consensus 306 --~~~~pdl~p~l~~la~~a~~~~~s~i~gi~~lr~KESdRi~~~~~~L~klG~~~~~~~d~l~I~G~~-------l~~~ 376 (450)
T 2o0b_A 306 --LRAVGELTPSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVITATP-------LRPG 376 (450)
T ss_dssp --CTTCGGGHHHHHHHHHTSSTTCEEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEEECCC-------CCCE
T ss_pred --CCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHEHHHHHHHHHHHHHHCCCEEEEECCEEEEECCC-------CCCC
T ss_conf --6667543125677888741477402215103110100699999999997799899979989997977-------8677
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHCCC
Q ss_conf 6604884589999999997359958994454302778698889986597
Q gi|254780458|r 395 MVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPDFINLMKTLGA 443 (449)
Q Consensus 395 ~v~s~~DHRiaMa~~i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~LGa 443 (449)
.|+||+|||+||||++|||.+++ ++|+|++||+||||+||+.|++|++
T Consensus 377 ~v~s~~DHRiaMa~~i~al~~~g-~~I~~~~~v~ks~P~F~~~~~~L~g 424 (450)
T 2o0b_A 377 IWRAYADHRMAMAGAIIGLRVAG-VEVDDIAATTKTLPEFPRLWAEMVG 424 (450)
T ss_dssp EECCTTCHHHHHHHHHHHTTSTT-EEESCGGGGGGTCTTHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHHHHHCCCC-EEEECCCEEECCCCCHHHHHHHHHC
T ss_conf 45289719999999999976798-6993877142769887999998618
No 6
>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5}
Probab=100.00 E-value=0 Score=584.20 Aligned_cols=408 Identities=19% Similarity=0.192 Sum_probs=340.5
Q ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCC
Q ss_conf 58970688536999818422289999999974498499977980289999999999849799998998999812688756
Q gi|254780458|r 9 TIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLL 88 (449)
Q Consensus 9 ~~~~~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~ 88 (449)
...++.+.+|+|+|++|||||+|||+|++|+|++|+|+|+|++.|+||++|++|||+||++|+++++++.|++.+. .+.
T Consensus 12 ~~~i~g~~~L~G~v~ipgSKS~s~RaLi~aaLa~g~s~i~n~l~s~D~~~~l~aL~~LGa~I~~~~~~~~i~~~~~-~~~ 90 (425)
T 2yvw_A 12 YFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLNNTVFINPSIN-SFI 90 (425)
T ss_dssp EEEEECCCCCEEEEECCBCHHHHHHHHHHGGGCSSCEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEECCCC-CCE
T ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCC-CCC
T ss_conf 8999797967889977881999999999999779969991289079999999999977998998399999958977-767
Q ss_pred CCCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCCCEEEE
Q ss_conf 85310550333332200134314553103312333334465421010123127410101343222012022211111343
Q gi|254780458|r 89 SPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYK 168 (449)
Q Consensus 89 ~~~~~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~~~~~~~ 168 (449)
.+.. +.++.++++++++..++......+.++|+++|++|||++++++|++||++++..+ +.+|+.+.+.. +..+.
T Consensus 91 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~G~~~l~~Rp~~~l~~~L~~lG~~~~~~~-~~~~~~~~~~~---~~~~~ 165 (425)
T 2yvw_A 91 TNQE-IIRRMRASVLSLGPLLGRFGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVRE-GYVYVNLKEKR---RVHFK 165 (425)
T ss_dssp ECHH-HHHHCGGGGGGHHHHHHHHSEEEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEET-TEEEEECSSCC---CCEEE
T ss_pred CCHH-HHHCCCCCHHCCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCC-CCEEECCCCCC---CCCCC
T ss_conf 8877-8631563011124156644874474137544688978887630110000000246-74000355332---34203
Q ss_pred ECCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHH---HHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 02344433200000000001122234654544244446---654497344411333100267528651023320023211
Q gi|254780458|r 169 SPMDSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEII---LKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDS 245 (449)
Q Consensus 169 ~~~~S~q~~s~lLlA~~~~~g~t~i~~~~~s~~~i~~~---L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ 245 (449)
....|+|.++.+++++..+.+.+.+ ++..+++|+++| |++||+++....+ .+.+.|+++|.+.+|.||+||
T Consensus 166 ~~~~s~~~~~~~l~~~~~~~~~t~~-~~~~s~~~i~~t~~~l~~~g~~v~~~~~-----~i~i~g~~~~~~~~~~V~~D~ 239 (425)
T 2yvw_A 166 FDLVTVTGTENALLYLASVPEESIL-ENIALEPEVMDLIEVLKKMGAHVKVEGR-----SAYVKGSENLKGFTHSVIPDR 239 (425)
T ss_dssp CSSCCHHHHHHHHHHHTTCSSEEEE-ESCCCCHHHHHHHHHHHHTTCEEEEETT-----EEEEECCSSCCCCEEECCBCH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCEEECCE-----EEEEECCCCCCCCEEEECCCC
T ss_conf 5543136789999899747997202-3224442079999999857963130120-----489716721479538957883
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCC-C
Q ss_conf 221000001122556532223332322222221000001343234442278703432025642023332346443543-0
Q gi|254780458|r 246 SIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRS-I 324 (449)
Q Consensus 246 ssAa~~la~a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~~~~~~-~ 324 (449)
|+|+||+++|++. +++++++|+..++.|. ...++.+||+++....+... ......+++.+++..++++ +
T Consensus 240 ssAa~~~~aa~l~-~g~~~i~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 309 (425)
T 2yvw_A 240 IEAGTFMVGAVLT-DGEILLENARINHLRA-VVEKLKLIGGEVVEENGNLR--------VFRKESLRACDIETQVYPGFP 309 (425)
T ss_dssp HHHHHHHHHHHHT-TCEEEEESCCGGGCHH-HHHHHHHHTEEEEEETTEEE--------EEECSCCBCCCEEBCSTTSBC
T ss_pred HHHHHHHHHHHCC-CCCEEEECCCCCCCHH-HHHHHHHHCCEEEEECCCEE--------EEECCCCCCCCCCCCCCCCCC
T ss_conf 6777788886426-9846993676653123-44689872765896046326--------752244355556777687751
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHH
Q ss_conf 11101112322223474100272001245689999999974697899988959997678876666568726604884589
Q gi|254780458|r 325 VDEYPILLVISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRV 404 (449)
Q Consensus 325 ~D~~p~Lavla~~a~G~t~i~gi~~lkesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHRi 404 (449)
+|++|++++++++|+|.++++ .|||||+.++.++|++||+++++++|+++|+|++.+ +++.+++ +||||
T Consensus 310 ~d~~~~~~~~a~~a~G~~~lr----~KEsdRi~~~~~~L~klG~~v~~~~d~l~I~G~~~l------~g~~v~s-~DHRi 378 (425)
T 2yvw_A 310 TDMQAQFMALLSVAKGKSRIK----ENIFEHRFHHAQELNRLGANITVRGNTAYVEGVERL------YGSEVYS-TDLRA 378 (425)
T ss_dssp HHHHHHHHHHHTTSBSEEEEE----CSSCTTCCHHHHHHHTTTCCEEEETTEEEEECCSCC------BCCEEEC-CCTTT
T ss_pred HHCCHHHHHHEEEECCCEEEE----EECCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCC------CCCEECC-CCHHH
T ss_conf 110013212204824618999----620236889999999789979998998999899987------1773568-85899
Q ss_pred HHHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHCCCEEEEEC
Q ss_conf 999999997359958994454302778698889986597898859
Q gi|254780458|r 405 AMSFLVMGLASEYSVVVDDYTMISTIFPDFINLMKTLGARIEWVD 449 (449)
Q Consensus 405 aMa~~i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~LGa~ie~~~ 449 (449)
||||++|||.++++++|+|++||+||||+||++|++|||+|||++
T Consensus 379 aMa~avaal~~~g~~~I~~~~~v~kSyP~F~~~l~~LGa~Ie~i~ 423 (425)
T 2yvw_A 379 SASLVLAGLVAQGETVVRDVYHLDRGYEKLEEKLKKLGADIERVS 423 (425)
T ss_dssp THHHHHHHHHSBSEEEEECTHHHHHHCSSHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHCCCCEEECCCEEEECCCHHHHHHHHHCCCEEEEEE
T ss_conf 999999998589939986742897975319999996799899983
No 7
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=99.72 E-value=3.7e-17 Score=127.25 Aligned_cols=303 Identities=16% Similarity=0.167 Sum_probs=130.7
Q ss_pred CCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCCC-EEEEECCCCCCCCCEEHHHHHC--CCCC
Q ss_conf 310331233333446542101012312741010134322201202221111-1343023444332000000000--0112
Q gi|254780458|r 114 DFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNP-IVYKSPMDSVQSKSVVLLAGLN--TPGI 190 (449)
Q Consensus 114 ~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~~~-~~~~~~~~S~q~~s~lLlA~~~--~~g~ 190 (449)
.+++.+.+-.. ...+.-++++|++||++|+..++. +.|.|....++ ..+..+.+. ++..|+.++. .++.
T Consensus 41 ~G~s~i~n~~~--~~Dv~~~l~~L~~LG~~i~~~~~~---~~I~g~~~~~~~~~l~~g~Sg---t~~rll~~l~a~~~~~ 112 (450)
T 2o0b_A 41 RGASTISGALR--SRDTELMLDALQTLGLRVDGVGSE---LTVSGRIEPGPGARVDCGLAG---TVLRFVPPLAALGSVP 112 (450)
T ss_dssp CCCEEEETCCC--SHHHHHHHHHHHHTTCEEECSSSC---EEEESCCCCCTTCEEECTTCH---HHHHHHHHHHTTSSSE
T ss_pred CCEEEECCCCC--CHHHHHHHHHHHHCCCEEEEECCE---EEEECCCCCCCCCCEEHHCCH---HHHHHHHHHHHHCCEE
T ss_conf 99299898990--699999999999879989987999---999688678987632211027---7999999999626736
Q ss_pred CCCCC--CCCCCCHHHH--HHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHH--HHCCC-CCCCCCCCCC
Q ss_conf 22346--5454424444--6654497344411333100267528651023320023211221--00000-1122556532
Q gi|254780458|r 191 TEVIE--PVKTQDHMEI--ILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIA--FFPLA-AALLIPGSDI 263 (449)
Q Consensus 191 t~i~~--~~~s~~~i~~--~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ssA--a~~la-~a~l~~g~~i 263 (449)
+.+.+ ....||+-.. .|++||+++..++ .-+.+.+...+.+.++.++.+.|++ +-+|. ++.+..|..+
T Consensus 113 ~~l~G~~sL~~RP~~~l~~~L~~lGa~i~~~~-----~p~~i~~~~~l~~~~i~l~~~~sSQ~~salLlaa~~~~~g~~~ 187 (450)
T 2o0b_A 113 VTFDGDQQARGRPIAPLLDALRELGVAVDGTG-----LPFRVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLTV 187 (450)
T ss_dssp EEEECCGGGGGSCCHHHHHHHHHTTCEEECSS-----SSEEEECCSCCCCEEEEECCTTCTHHHHHHHHHGGGSTTCEEE
T ss_pred EEECCCHHHCCCCCHHHHHHHHHCCCEEECCC-----CCEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 99658767515985588767651480786685-----7557855888669768715877319998999877760699644
Q ss_pred CC--CCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 22--3332322222221000001343234442278703432025642023332346443543011101112322223474
Q gi|254780458|r 264 KL--LNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAFAEGE 341 (449)
Q Consensus 264 ~i--~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~~~~~~~~D~~p~Lavla~~a~G~ 341 (449)
.. .+....+--...+++|++||++|+...... +.+.+.++++.++.. -+|.... -+++++++...|.
T Consensus 188 i~~~~~~~s~p~i~~t~~~L~~~G~~I~~~~~~~--------~~i~~~~~~~~~~~v--~~D~ssA-a~~l~aa~i~~~~ 256 (450)
T 2o0b_A 188 QHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTPNR--------WQVRPGPVAARRWDI--EPDLTNA-VAFLSAAVVSGGT 256 (450)
T ss_dssp EECSSCCCCHHHHHHHHHHHHHTTCCEECCSTTE--------EEECCCCCCCCCEEC--CBCHHHH-HHHHHHHHHHTCE
T ss_pred ECCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCE--------EEECCCEECCCCCCC--CCCHHHH-HHHHHHHHHCCCC
T ss_conf 3134544675009989999987793588347845--------762250213532116--8876789-9999999857995
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCC--CC
Q ss_conf 100272001-245689999999974697899988959997678876666568726604884589999999997359--95
Q gi|254780458|r 342 TIIKGLAEV-MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASE--YS 418 (449)
Q Consensus 342 t~i~gi~~l-kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHRiaMa~~i~gl~~~--~~ 418 (449)
.++.|+... .+-++ .+.+.|++||++++..++++.+.+....++... ....+.|. .+.+++++..+. +.
T Consensus 257 i~i~~~~~~~~q~~~--~~l~~L~~mG~~i~~~~~~~~v~~~~~l~~~~~----~~~~~pdl--~p~l~~la~~a~~~~~ 328 (450)
T 2o0b_A 257 VRITGWPRVSVQPAD--HILAILRQLNAVVIHADSSLEVRGPTGYDGFDV----DLRAVGEL--TPSVAALAALASPGSV 328 (450)
T ss_dssp EEETTCCSSCSSCHH--HHHHHHHHTTCEEEEETTEEEEECCSCCCCCEE----ECTTCGGG--HHHHHHHHHTSSTTCE
T ss_pred EEEECCCCCCCCCHH--HHHHHHHHCCCEEEECCCCEEECCCCCCCEEEC----CCCCCCCC--CHHHHHHHHHHHCCCC
T ss_conf 798424323335076--999999865947997188379845765320531----66667543--1256778887414774
Q ss_pred EEEECCCEECCCCC----CHHHHHHHCCCEEEEE
Q ss_conf 89944543027786----9888998659789885
Q gi|254780458|r 419 VVVDDYTMISTIFP----DFINLMKTLGARIEWV 448 (449)
Q Consensus 419 ~~I~~~~~v~ksyP----~F~~~l~~LGa~ie~~ 448 (449)
+++.|.+..+--.. .+.+.|+++|++++.-
T Consensus 329 s~i~gi~~lr~KESdRi~~~~~~L~klG~~~~~~ 362 (450)
T 2o0b_A 329 SRLSGIAHLRGHETDRLAALSTEINRLGGTCRET 362 (450)
T ss_dssp EEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred EEECCHHHHHHEHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 0221510311010069999999999779989997
No 8
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 3lth_A* 3kqa_A* 3kqj_A* 2z2c_A* 1uae_A* 3iss_A* 3kr6_A* 1a2n_A* 2rl1_A* 2rl2_A*
Probab=99.66 E-value=3.7e-16 Score=120.84 Aligned_cols=305 Identities=15% Similarity=0.164 Sum_probs=120.8
Q ss_pred HHHHHCCCCEEEECC--CCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEECCCC
Q ss_conf 999744984999779--802899999999998497999989989998126887568531055033333220013431455
Q gi|254780458|r 36 ILGGIAAGETQIRGV--LESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVY 113 (449)
Q Consensus 36 l~AaLa~g~s~i~n~--~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~~~~~~i~~~~sgt~~r~l~~~l~~~ 113 (449)
++|++.++.+++.+- +..+-+...+++|++||++|+..++...+...| .++..+...+...+....-++++. ...
T Consensus 100 ~~a~~~~~~~~l~Gd~sl~~RPm~~li~~L~~lGa~i~~~~g~~~~~i~g--~l~g~~~~~~~~Ssq~~s~llla~-~~~ 176 (419)
T 1ejd_A 100 LVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNG--RLKGAHIVMDKVSVGATVTIMSAA-TLA 176 (419)
T ss_dssp HHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETTEEEEECSS--SCBCCEEECSSCCHHHHHHHHHHH-TTS
T ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEECCC--CCCCCEEECCCCCHHHHHHHHHHH-HHC
T ss_conf 56642871798438854688974789999986787799607925550378--866746965877589999999877-616
Q ss_pred CCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCC--CCCEEEEECCCCCCCCCEEHHHHHCCCCCC
Q ss_conf 310331233333446542101012312741010134322201202221--111134302344433200000000001122
Q gi|254780458|r 114 DFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRT--PNPIVYKSPMDSVQSKSVVLLAGLNTPGIT 191 (449)
Q Consensus 114 ~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~--~~~~~~~~~~~S~q~~s~lLlA~~~~~g~t 191 (449)
++.+.+. ..-.++.++..++.|+.+|++++..++.. +.+.|+.. +..+.+..+.+|+ +.++.|++...+..
T Consensus 177 ~g~~~i~--~~~~~~~i~~t~~~l~~~G~~i~~~~~~~--~~i~g~~~~~~~~~~V~~D~ssa---a~~~~aa~l~~~~i 249 (419)
T 1ejd_A 177 EGTTIIE--NAAREPEIVDTANFLVALGAKISGQGTDR--ITIEGVERLGGGVYRVLPDRIET---GTFLVAAAISGGKI 249 (419)
T ss_dssp BSEEEEE--TCCCCHHHHHHHHHHHHTTCEEECTTSSE--EEEECCSCBCCEEEECCBCHHHH---HHHHHHHHTTTCEE
T ss_pred CCCEEEE--ECCCCCCHHHHHHHHHHCCEEEEECCCEE--EEEECCCCCCCCCEEECCCCHHH---HHHHHHHHCCCCEE
T ss_conf 6962897--25876659899888985963999638719--99907501579735958881789---99999982669869
Q ss_pred CCCCC-CCCCCHHHHHHHHCCCEEEEECCCCCEEEEEECC-CCCCCCCCCCCCCCH----HHHHHCCCCCCCCCCCCCCC
Q ss_conf 23465-4544244446654497344411333100267528-651023320023211----22100000112255653222
Q gi|254780458|r 192 EVIEP-VKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEG-RKRISGCNLKIPGDS----SIAFFPLAAALLIPGSDIKL 265 (449)
Q Consensus 192 ~i~~~-~~s~~~i~~~L~~fG~~i~~~~~~~~~~~i~i~g-~~~l~~~~~~Ip~D~----ssAa~~la~a~l~~g~~i~i 265 (449)
++..- ..+...+...|++||+++.+..+. +.+.. ...+.+.+..-.+|. ..++.++.+++...|. -.+
T Consensus 250 ~~~~~~~~~~~~~~~il~~mg~~i~~~~~~-----~~v~~~~~~~~~id~~~~~d~~~~~~~~~~~~~~~~~~~G~-~~~ 323 (419)
T 1ejd_A 250 VCRNAQPDTLDAVLAKLREAGADIETGEDW-----ISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGT-GVI 323 (419)
T ss_dssp EEESCCGGGCHHHHHHHHHTTCEEEECSSE-----EEEECTTCCCBCCCEECCSTTSCCGGGHHHHHHHHHTSBSE-EEE
T ss_pred EECCCCHHHHHHHHHHHHHCCCEEEECCCE-----EEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHEEECCC-EEE
T ss_conf 993878688789999999759989964886-----99985056445458627856664123567764121281363-299
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEE-EECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 333232222222100000134323444227870343202564-2023332346443543011101112322223474100
Q gi|254780458|r 266 LNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVR-FSKIKGITISDNRLRSIVDEYPILLVISAFAEGETII 344 (449)
Q Consensus 266 ~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~-~~~l~g~~i~~~~~~~~~D~~p~Lavla~~a~G~t~i 344 (449)
++-..+.. ..+.+-|++||++++..++.+. +. ...++|.+++..|.. ..+.++++++.++|+++|
T Consensus 324 ~~ke~dr~-~~~~~~L~klG~~v~~~~d~l~---------I~G~~~l~g~~v~s~DHR----iaMa~ava~l~~~g~~~I 389 (419)
T 1ejd_A 324 TETIFENR-FMHVPELIRMGAHAEIESNTVI---------CHGVEKLSGAQVMATDLR----ASASLVLAGCIAEGTTVV 389 (419)
T ss_dssp ECCSCSSC-CTHHHHHHHTTCEEEEETTEEE---------EECCSCCBCCEECCSSHH----HHHHHHHHHHHSBEEEEE
T ss_pred EEEEEECH-HHHHHHHHHCCCEEEEECCEEE---------EECCCCCCCCEEECCCHH----HHHHHHHHHHHCCCCEEE
T ss_conf 99998578-9999999957997999899999---------989997738727138089----999999999839993998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 2720012456899999999746978999
Q gi|254780458|r 345 KGLAEVMTSKQFSGIIECFNINNIQYER 372 (449)
Q Consensus 345 ~gi~~lkesdRi~~~~~~L~~~G~~~~~ 372 (449)
.|.+++..|= -.+.+.|+++|+++|.
T Consensus 390 ~~~~~v~kSy--P~F~~~l~~LGa~Ie~ 415 (419)
T 1ejd_A 390 DRIYHIDRGY--ERIEDKLRALGANIER 415 (419)
T ss_dssp CCTHHHHHHS--SSHHHHHHTTTCEEEE
T ss_pred CCCEEEECCC--CCHHHHHHHCCCEEEE
T ss_conf 4713897864--2489999966989999
No 9
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A
Probab=99.64 E-value=9.2e-15 Score=111.93 Aligned_cols=329 Identities=15% Similarity=0.155 Sum_probs=184.6
Q ss_pred EEEECCC-CCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCC----CCEEE
Q ss_conf 0550333-332200134314553103312333334465421010123127410101343222012022211----11134
Q gi|254780458|r 93 PLDFKGF-DMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTP----NPIVY 167 (449)
Q Consensus 93 ~i~~~~s-gt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~----~~~~~ 167 (449)
.+.+-.| ..+.|.++ ++++.++++++.+- +..+.+...+++|++||++|+..+++.. +.+.|.... .+..+
T Consensus 39 ~v~vp~sKS~s~R~li-~aaLa~g~s~I~n~--~~~~Dv~~~l~~l~~LG~~i~~~~~~~~-i~i~g~g~~~~~~~~~~i 114 (450)
T 3nvs_A 39 EVNLPGSKSVSNRALL-LAALASGTTRLTNL--LDSDDIRHMLNALTKLGVNYRLSADKTT-CEVEGLGQAFHTTQPLEL 114 (450)
T ss_dssp EEECCBCHHHHHHHHH-HHHHSBSEEEEESC--CCSHHHHHHHHHHHHTTCEEEECTTSSC-EEEECCSSCCBCSSCEEE
T ss_pred EEEECCCHHHHHHHHH-HHHHCCCCEEECCC--CCCHHHHHHHHHHHHCCCEEEEECCCEE-EEEECCCCCCCCCCCHHH
T ss_conf 9991780999999999-99976998999249--9078999999999986997999579259-999816876567885454
Q ss_pred EECCCCCCCCCEEHHHHH--CCCCCCCCC--CCCCCCCHHHH--HHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 302344433200000000--001122234--65454424444--665449734441133310026752865102332002
Q gi|254780458|r 168 KSPMDSVQSKSVVLLAGL--NTPGITEVI--EPVKTQDHMEI--ILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKI 241 (449)
Q Consensus 168 ~~~~~S~q~~s~lLlA~~--~~~g~t~i~--~~~~s~~~i~~--~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~I 241 (449)
..+. | - +++.++.++ ..++.+.+. ..+..||+-.. .|++||++++...+. +..-+++.|.+ +.+..+.+
T Consensus 115 ~~g~-S-G-t~lrll~~l~~~~~~~v~~~G~~sL~~Rp~~~l~~~L~~lGa~i~~~~~~-~~~P~~i~g~~-l~~~~~~i 189 (450)
T 3nvs_A 115 FLGN-A-G-TAMRPLAAALCLGQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQE-NFPPLRIQGTG-LQAGTVTI 189 (450)
T ss_dssp ECTT-C-H-HHHHHHHHHTTSSBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSST-TSSCEEEECCC-CCSEEEEE
T ss_pred HHCC-C-H-HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-CCCCEEEECCC-CCCCEEEE
T ss_conf 3135-5-7-78888876311456349705855553204878999999769899981157-73416988787-66873897
Q ss_pred CCCHHHH--HHCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 3211221--0000011225565-3222-3332322222221000001343234442278703432025642023332346
Q gi|254780458|r 242 PGDSSIA--FFPLAAALLIPGS-DIKL-LNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITIS 317 (449)
Q Consensus 242 p~D~ssA--a~~la~a~l~~g~-~i~i-~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~ 317 (449)
+++.|+. +-++.+|.+.+|. .|.+ .|....+--...+++|++||++++..+.....-.. ....+++.++.
T Consensus 190 ~~~~SsQ~~salLlaa~~~~g~t~I~~~~~~~s~p~i~~t~~~l~~~G~~i~~~~~~~~~i~~------~~~~~~~~~~~ 263 (450)
T 3nvs_A 190 DGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPA------GQSYVSPGQFL 263 (450)
T ss_dssp CCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEETTTEEEECT------TCCCBCCSEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEECCCCCEEEEEC------CCCCCCCEEEE
T ss_conf 875532888899988873588579970576677748999999874267325316872289964------74344783588
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEE
Q ss_conf 44354301110111232222347410027200-12456899999999746978999889599976788766665687266
Q gi|254780458|r 318 DNRLRSIVDEYPILLVISAFAEGETIIKGLAE-VMTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMV 396 (449)
Q Consensus 318 ~~~~~~~~D~~p~Lavla~~a~G~t~i~gi~~-lkesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v 396 (449)
.+.=+-..-+++++++...|+.++.|+.- ....| ..+.+.|++||++++..++.+...+.. . .+..+
T Consensus 264 ---v~~D~s~Aa~~~~aa~l~~g~i~i~~~~~~~~q~~--~~~l~il~~mG~~i~~~~~~~~~~~~~-l------~~~~~ 331 (450)
T 3nvs_A 264 ---VEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGD--IQFADALEKMGAQIEWGDDYVIARRGE-L------NAVDL 331 (450)
T ss_dssp ---CCBCHHHHHHHHHHHHHHCSEEEEESCCTTCSCGG--GGHHHHHHHHTCEEEECSSEEEEECCC-C------BCCEE
T ss_pred ---ECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHH--HHHHHHHHHCCCEEEECCCEEEEECCC-C------CCCCC
T ss_conf ---38998899999999997499589937778865445--799999997698599659779950687-7------62346
Q ss_pred ECCCCHHHHHHHHHHHHHCCCCEEEECCCEECCCCC----CHHHHHHHCCCEEEEE
Q ss_conf 048845899999999973599589944543027786----9888998659789885
Q gi|254780458|r 397 QSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFP----DFINLMKTLGARIEWV 448 (449)
Q Consensus 397 ~s~~DHRiaMa~~i~gl~~~~~~~I~~~~~v~ksyP----~F~~~l~~LGa~ie~~ 448 (449)
+...---.++.+++++..+++.+++.|.+..+--.- .+.+.|+++|++++.-
T Consensus 332 d~~~~pD~~p~l~vla~~a~g~s~i~gi~~lr~KEsdRl~~~~~~L~klG~~i~~~ 387 (450)
T 3nvs_A 332 DFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEG 387 (450)
T ss_dssp ECTTCTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 84569836778999997259984304555530130268999999999779989997
No 10
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=99.59 E-value=1e-14 Score=111.65 Aligned_cols=320 Identities=13% Similarity=0.133 Sum_probs=171.1
Q ss_pred HHHHHHHHH-HHHHCCCCEEEECC--CCHHHHHHHHHHHHHCCCEEEEECC-E--EEEEECCCCCCCCCCCEEEECCCC-
Q ss_conf 228999999-99744984999779--8028999999999984979999899-8--999812688756853105503333-
Q gi|254780458|r 28 RSLSHFSII-LGGIAAGETQIRGV--LESDDVLNTMRMMHYLGARFTKKDR-E--WIVQGVGNGCLLSPEYPLDFKGFD- 100 (449)
Q Consensus 28 Ks~s~RaLl-~AaLa~g~s~i~n~--~~s~Dv~~~l~al~~LG~~i~~~~~-~--~~i~g~g~~~~~~~~~~i~~~~sg- 100 (449)
...+-|.++ ++++.++++++.+- +..+.+...+++|++||++++.+++ . +.|+|.. ......++...+.
T Consensus 94 sgt~~r~l~~l~~~~~~~~~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~lPi~i~g~~----~~~~~~i~~~~~S~ 169 (445)
T 2pqc_A 94 AATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGPK----TPTPITYRVPMASA 169 (445)
T ss_dssp CHHHHHHHHHHHHTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEEEEEECCS----SCCCCEEECSSSCH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEECCC----CCCCEEEECCCCCH
T ss_conf 56788876555405784399758634164138999999985474576057984677998668----88667998156549
Q ss_pred -CCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEE--CCCCCCCCEEECCCCC--CCEEEEECCCCCC
Q ss_conf -3220013431455310331233333446542101012312741010--1343222012022211--1113430234443
Q gi|254780458|r 101 -MGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKL--PEDKRLPLVLHGPRTP--NPIVYKSPMDSVQ 175 (449)
Q Consensus 101 -t~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~--~~~~~~Pi~I~g~~~~--~~~~~~~~~~S~q 175 (449)
.+..+|++ +...++.+.+.... . .+ +...+.|..+|+++.. ...+..-+.|.|.... ..+.+..+.+|.
T Consensus 170 ~~~s~llla-a~~~~g~~~i~~~~-~-~~--~~~~~~l~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~v~~D~s~a- 243 (445)
T 2pqc_A 170 QVKSAVLLA-GLNTPGITTVIEPI-M-TR--DHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGDPSST- 243 (445)
T ss_dssp HHHHHHHHH-HHTSSSEEEEEESS-C-CC--CHHHHHHHHTTCCEEEEECTTSCEEEEEETTCCCBCCEEECCBCHHHH-
T ss_pred HHHHHHHHC-CCCCCCCEEEECCC-C-CC--CHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCHHHH-
T ss_conf 999999952-31489958995887-7-77--799999998526654211588816999876555688478838987899-
Q ss_pred CCCEEHHHHHCCCC-CCCCCCCCCC---CCHHHHHHHHCCCEEEEECCCCC----EEEEEECCCCCCCCCCCCC--CCCH
Q ss_conf 32000000000011-2223465454---42444466544973444113331----0026752865102332002--3211
Q gi|254780458|r 176 SKSVVLLAGLNTPG-ITEVIEPVKT---QDHMEIILKEFGVDLLIKSDTIE----DYSVRIEGRKRISGCNLKI--PGDS 245 (449)
Q Consensus 176 ~~s~lLlA~~~~~g-~t~i~~~~~s---~~~i~~~L~~fG~~i~~~~~~~~----~~~i~i~g~~~l~~~~~~I--p~D~ 245 (449)
+.+++|++...| ..++.+ ... +..+-..|++||+++.+..+.+. ...+.+.+ ..+.+.++.. .+|+
T Consensus 244 --a~~~~aaa~~~g~~i~i~n-~~~~~~~~~~l~iL~~mG~~i~~~~~~~~~~~~~~~i~~~~-~~l~~~~~~~~~~p~~ 319 (445)
T 2pqc_A 244 --AFPLVAALLVPGSDVTILN-VLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRS-STLKGVTVPEDRAPSM 319 (445)
T ss_dssp --HHHHHHHHHSTTCEEEEEE-EECCGGGCHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEEC-CCCBCCEECGGGGGGT
T ss_pred --HHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHCCCEEEEECCEEECCCCEEEEEEEE-CCCCCCCCCCCCCCCH
T ss_conf --9999999976998599818-88662078999999985997996045476486026788763-1456631574559975
Q ss_pred H-HHHHCCCCCCCCCCCCCCCCCCCCCCC----C-CCCCCHHCCCCCCCCCCCCEEEE-ECCCCCEEEEEECCCCCCCCC
Q ss_conf 2-210000011225565322233323222----2-22210000013432344422787-034320256420233323464
Q gi|254780458|r 246 S-IAFFPLAAALLIPGSDIKLLNVLTNPL----R-VGIIDILREMGADITLSNSRIES-GENIADIRVRFSKIKGITISD 318 (449)
Q Consensus 246 s-sAa~~la~a~l~~g~~i~i~n~~~~~~----q-~~~ldiL~~mG~~i~~~~~~~~~-~~~~~~i~~~~~~l~g~~i~~ 318 (449)
. ....+.++++...| ...++|+..... + ..+.+-|++||++++..++.... |.+.. .....++|..++.
T Consensus 320 ~D~~p~la~~a~~a~g-~s~i~gi~~lr~kEsdRi~~~~~eL~k~G~~i~~~~d~l~I~g~~~~---~~~~~~~g~~i~t 395 (445)
T 2pqc_A 320 IDEYPILAVAAAFAEG-ATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDG---KGLGNASGAAVAT 395 (445)
T ss_dssp GGGHHHHHHHHTTSBS-EEEECCCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSCEEEECCTTC---TTCSCTTCCEECC
T ss_pred HHHHHHHHHHHHHCCC-CEEEECHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCC---CCCCCCCCCEEEC
T ss_conf 8899999999984799-76991226730100178999999999779879983886999688666---5666776767858
Q ss_pred C-CCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCCCEEEE
Q ss_conf 4-3543011101112322223474100272001245-6899999999746978999
Q gi|254780458|r 319 N-RLRSIVDEYPILLVISAFAEGETIIKGLAEVMTS-KQFSGIIECFNINNIQYER 372 (449)
Q Consensus 319 ~-~~~~~~D~~p~Lavla~~a~G~t~i~gi~~lkes-dRi~~~~~~L~~~G~~~~~ 372 (449)
. |.. ..+.+++++..++|+++|.|++++..+ .. +.+.|+++|+++|+
T Consensus 396 ~~DHR----iama~~iaal~~~g~~~I~~~~~v~ksyP~---f~~~l~~LGa~ie~ 444 (445)
T 2pqc_A 396 HLDHR----IAMSFLVMGLVSENPVTVDDATMIATSFPE---FMDLMAGLGAKIEL 444 (445)
T ss_dssp TTCHH----HHHHHHHHHTTSSSCEEESCCTTGGGTCTT---HHHHHHHHTCEEEE
T ss_pred CCCHH----HHHHHHHHHHHCCCCEEEECCEEEECCCHH---HHHHHHHCCCEEEE
T ss_conf 99789----999999999868998999568079670460---99999957988995
No 11
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=99.59 E-value=1.4e-14 Score=110.78 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=15.4
Q ss_pred HCCCCEEEECC--CCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 44984999779--80289999999999849799998
Q gi|254780458|r 40 IAAGETQIRGV--LESDDVLNTMRMMHYLGARFTKK 73 (449)
Q Consensus 40 La~g~s~i~n~--~~s~Dv~~~l~al~~LG~~i~~~ 73 (449)
..++.+++.+- +..+.+...+++|++||++++.+
T Consensus 104 ~~~~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~ 139 (427)
T 1rf6_A 104 GADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQ 139 (427)
T ss_dssp GCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEE
T ss_pred CCCCEECCCCCHHHHCCCCCHHHHHHHHCCCEEEEC
T ss_conf 214333466886662653201234577428479831
No 12
>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5}
Probab=99.47 E-value=5.7e-13 Score=100.49 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=35.3
Q ss_pred CCCHHCCCCCCCCCCCCEEEEECCCCCEEEE-EECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHH-H
Q ss_conf 2100000134323444227870343202564-2023332346443543011101112322223474100272001245-6
Q gi|254780458|r 277 IIDILREMGADITLSNSRIESGENIADIRVR-FSKIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAEVMTS-K 354 (449)
Q Consensus 277 ~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~-~~~l~g~~i~~~~~~~~~D~~p~Lavla~~a~G~t~i~gi~~lkes-d 354 (449)
+.+-|++||++++..++++. +. ..+++|.+++..|.+ ..+.++++++.++|+++|.|++++..| -
T Consensus 340 ~~~~L~klG~~v~~~~d~l~---------I~G~~~l~g~~v~s~DHR----iaMa~avaal~~~g~~~I~~~~~v~kSyP 406 (425)
T 2yvw_A 340 HAQELNRLGANITVRGNTAY---------VEGVERLYGSEVYSTDLR----ASASLVLAGLVAQGETVVRDVYHLDRGYE 406 (425)
T ss_dssp HHHHHHTTTCCEEEETTEEE---------EECCSCCBCCEEECCCTT----TTHHHHHHHHHSBSEEEEECTHHHHHHCS
T ss_pred HHHHHHHCCCEEEEECCEEE---------EECCCCCCCCEECCCCHH----HHHHHHHHHHHCCCCEEECCCEEEECCCH
T ss_conf 99999978997999899899---------989998717735688589----99999999985899399867428979753
Q ss_pred HHHHHHHHHHHCCCEEEE
Q ss_conf 899999999746978999
Q gi|254780458|r 355 QFSGIIECFNINNIQYER 372 (449)
Q Consensus 355 Ri~~~~~~L~~~G~~~~~ 372 (449)
. +.+.|+++|+++|.
T Consensus 407 ~---F~~~l~~LGa~Ie~ 421 (425)
T 2yvw_A 407 K---LEEKLKKLGADIER 421 (425)
T ss_dssp S---HHHHHHHTTCCEEE
T ss_pred H---HHHHHHHCCCEEEE
T ss_conf 1---99999967998999
No 13
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=47.01 E-value=9.9 Score=15.84 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHCCCEE
Q ss_conf 23222234741002720012456-8999999997469789
Q gi|254780458|r 332 LVISAFAEGETIIKGLAEVMTSK-QFSGIIECFNINNIQY 370 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~lkesd-Ri~~~~~~L~~~G~~~ 370 (449)
+++..|..|.-.+.|.....+-+ -++.+.+.|.+++...
T Consensus 150 ~t~liF~SGkivitGaks~~~~~~a~~~i~~~L~~~~~~~ 189 (198)
T 1mp9_A 150 VVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELDCVK 189 (198)
T ss_dssp EEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8999978975999778999999999999999999851557
No 14
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structure initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A*
Probab=45.15 E-value=10 Score=15.73 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=7.6
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 9999998497999
Q gi|254780458|r 59 TMRMMHYLGARFT 71 (449)
Q Consensus 59 ~l~al~~LG~~i~ 71 (449)
.-..|-.|||+|-
T Consensus 24 a~~~Lad~GAeVI 36 (428)
T 1q7e_A 24 CTQMLAWFGADVI 36 (428)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHHCCEEE
T ss_conf 9999998099199
No 15
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=43.94 E-value=3.8 Score=18.52 Aligned_cols=94 Identities=9% Similarity=0.016 Sum_probs=60.4
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEC----CEEEEEECCCCCCCCCCCEEEECCCCCCCCEEE
Q ss_conf 9999999744984999779802899999999998497999989----989998126887568531055033333220013
Q gi|254780458|r 32 HFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKD----REWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMM 107 (449)
Q Consensus 32 ~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~----~~~~i~g~g~~~~~~~~~~i~~~~sgt~~r~l~ 107 (449)
.-|+|.|.-.+|.| .+++..+.++++..|.++++.. ..+.+.|+|..++ +-| | ...
T Consensus 65 iaAfL~Al~~kGet-------~~Eiag~~~am~~~~~~i~~~~~~~~~~vD~~gTGGdG~---------niS-t---~~a 124 (474)
T 1uou_A 65 IGAMLMAIRLRGMD-------LEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGGVGD---------KVS-L---VLA 124 (474)
T ss_dssp HHHHHHHHHHHCCC-------HHHHHHHHHHHHTTSCCCCCCGGGGGGBEEEEESCCTTC---------CHH-H---HHH
T ss_pred HHHHHHHHHHHCCC-------HHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCC---------HHH-H---HHH
T ss_conf 99999999874989-------999999999999848826676457887340589999872---------277-9---999
Q ss_pred EECCCCCCEEEECCCCCCCCCCCCCEEEEEEEC-CCCEEEC
Q ss_conf 431455310331233333446542101012312-7410101
Q gi|254780458|r 108 GVVGVYDFQTFFKGRAEILQPTIESLLAPLYQM-GVQVKLP 147 (449)
Q Consensus 108 ~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~l-Ga~i~~~ 147 (449)
.+++.++.++.-.|+.++... .--.|.|+.+ |+++...
T Consensus 125 ~v~Aa~G~~VaKhGnR~~ss~--~GSaD~LEal~Gv~i~~s 163 (474)
T 1uou_A 125 PALAACGCKVPMISGRGLGHT--GGTLDKLESIPGFNVIQS 163 (474)
T ss_dssp HHHHTTTCBEEEECCCCBTTB--CCHHHHHTTSTTCCCCCC
T ss_pred HHHHHCCCCHHHCCCCCCCCC--CCHHHHHHHCCCCCCCCC
T ss_conf 999976983321268888988--656999997239776779
No 16
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=41.88 E-value=9.1 Score=16.09 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHH
Q ss_conf 232222347410027200124568-9999999974
Q gi|254780458|r 332 LVISAFAEGETIIKGLAEVMTSKQ-FSGIIECFNI 365 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~lkesdR-i~~~~~~L~~ 365 (449)
+.+..|..|...+.|.....|-.+ +..+.+.|.+
T Consensus 146 ~t~liF~sGkivitGaks~~~~~~a~~~i~~~L~~ 180 (182)
T 1ais_A 146 SVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDK 180 (182)
T ss_dssp EEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999779879997679999999999999999996
No 17
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=39.80 E-value=15 Score=14.78 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=7.3
Q ss_pred HHHHCCCEEEE
Q ss_conf 66544973444
Q gi|254780458|r 206 ILKEFGVDLLI 216 (449)
Q Consensus 206 ~L~~fG~~i~~ 216 (449)
.|+++|..++.
T Consensus 79 ~L~~lGf~~e~ 89 (188)
T 1x9z_A 79 ALAELGIDFQS 89 (188)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHCCCEEEE
T ss_conf 99977959996
No 18
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA; 1.55A {Thermus thermophilus HB8} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=37.93 E-value=7.9 Score=16.48 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=57.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEC-CEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEC
Q ss_conf 9999999744984999779802899999999998497999989-989998126887568531055033333220013431
Q gi|254780458|r 32 HFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKD-REWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVV 110 (449)
Q Consensus 32 ~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~-~~~~i~g~g~~~~~~~~~~i~~~~sgt~~r~l~~~l 110 (449)
.-|++.|.--+|.| .+++..+.++++..|.++.+.. ..+.+.+.+.++...+. ..-+...++
T Consensus 35 i~AfL~a~~~kg~t-------~~El~g~~~a~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~----------~s~~aa~v~ 97 (329)
T 2elc_A 35 AAGLLVALSLRGER-------PHEIAAMARAMREAARPLRVHRRPLLDIVGTGGDGKGLMN----------LSTLAALVA 97 (329)
T ss_dssp HHHHHHHHHHHCCC-------HHHHHHHHHHHHHHSCCCCCCCSSEEEEEECCCCSSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC----------HHHHHHHHH
T ss_conf 99999999987939-------9999999999998567554246776533478999877653----------178899998
Q ss_pred CCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEC
Q ss_conf 4553103312333334465421010123127410101
Q gi|254780458|r 111 GVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLP 147 (449)
Q Consensus 111 ~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~ 147 (449)
+.++.++...|...+..+ ....+.|+.+|+.+...
T Consensus 98 A~~g~~v~~hg~~~~~~~--~g~~d~le~lg~~~~~~ 132 (329)
T 2elc_A 98 AAGGVAVAKHGNRAASSR--AGSADLLEALGVDLEAP 132 (329)
T ss_dssp HHTTCEEEEEECCCTTTT--CSHHHHHHHTTCCTTCC
T ss_pred HCCCCEEEEECCCCCCCC--CCHHHHHHHCCCCCCCC
T ss_conf 537936982279989966--23799986415774678
No 19
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=37.08 E-value=16 Score=14.51 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=69.6
Q ss_pred EEEECCCCEE--EEEECCCCHHHHHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCC-
Q ss_conf 8970688536--99981842228999999997-4498499977980289999999999849799998998999812688-
Q gi|254780458|r 10 IQSSYSCGLQ--GTICIPGDRSLSHFSIILGG-IAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNG- 85 (449)
Q Consensus 10 ~~~~~~~~L~--G~i~vp~SKs~s~RaLl~Aa-La~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~- 85 (449)
+.++..++|+ |+|-.|+|-++..-.-.-+. ...-+..|.-+...+|+..+++.++..|..|. +.|.|+.
T Consensus 2 ~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~~~~~~P~~vv~P~s~~~V~~~v~~A~~~~~~v~-------~rggGhs~ 74 (459)
T 2bvf_A 2 VSSKLATPLSIQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEIS-------VRSGGHNP 74 (459)
T ss_dssp ---CCSSCCCCSSEEECTTSTTHHHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHHTCCEE-------EESSCCCT
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEE-------EECCCCCC
T ss_conf 75333776679825989899047999988854625787689965999999999999998798299-------98899688
Q ss_pred -CCCCC--CCEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCE
Q ss_conf -75685--310550333332200134314553103312333334465421010123127410
Q gi|254780458|r 86 -CLLSP--EYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQV 144 (449)
Q Consensus 86 -~~~~~--~~~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i 144 (449)
+.... -..||+.+... + . .-.....+++-++.++ .++.++|.+.|..+
T Consensus 75 ~g~s~~~~gi~Id~~~~~~----i-~-id~~~~tv~V~aG~~~-----~~l~~~l~~~G~~~ 125 (459)
T 2bvf_A 75 NGYATNDGGIVLDLRLMNS----I-H-IDTAGSRARIGGGVIS-----GDLVKEAAKFGLAA 125 (459)
T ss_dssp TCTTCCSSSEEEECTTCCC----E-E-EETTTTEEEEETTCBH-----HHHHHHHHTTTEEE
T ss_pred CCCCCCCCEEEEECCCCCC----E-E-EECCCCEEEEECCEEH-----HHHHHHHHHCCEEE
T ss_conf 8875788989999867898----7-9-8279998999577499-----99999998689367
No 20
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1cdw_A* 1nvp_A ...
Probab=34.58 E-value=14 Score=14.85 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCCCHHH
Q ss_conf 2322223474100272001
Q gi|254780458|r 332 LVISAFAEGETIIKGLAEV 350 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~l 350 (449)
++++.|..|...|.|....
T Consensus 142 vt~lIF~SGkivItGaks~ 160 (180)
T 1ytb_A 142 IVLLIFVSGKIVLTGAKQR 160 (180)
T ss_dssp CEEEECTTSEEEEEEESSH
T ss_pred EEEEEECCCEEEEECCCCH
T ss_conf 8999966986999767999
No 21
>3gmg_A Uncharacterized protein RV1825/MT1873; structural genomics, unknown function, cell membrane, membrane, transmembrane, PSI-2; 1.50A {Mycobacterium tuberculosis}
Probab=34.13 E-value=18 Score=14.21 Aligned_cols=32 Identities=6% Similarity=-0.058 Sum_probs=13.2
Q ss_pred HHHHHHCCCEEEEE-CCEEEEECCCCCCCCCCC
Q ss_conf 99997469789998-895999767887666656
Q gi|254780458|r 360 IECFNINNIQYERE-GDYLMIKGVPGGKGLGCS 391 (449)
Q Consensus 360 ~~~L~~~G~~~~~~-~d~l~I~G~~~~~~~~~~ 391 (449)
.+.++..|+.++.+ .|.+.|..........+.
T Consensus 126 ~~~~~~~g~~v~v~~~~~i~Ipa~~~~~~~~yA 158 (170)
T 3gmg_A 126 QDGVKRVGGRMVVQQADRVDVTALRQPKQHQYA 158 (170)
T ss_dssp HHHHHHTTCEEEEEEEEEEEECCCCCCCCCSSC
T ss_pred HHHHHHCCCEEEEEECCCEEEECCCCCCCCCCE
T ss_conf 999997197899996270897167889887325
No 22
>2bpq_A Anthranilate phosphoribosyltransferase; tryptophan biosynthesis, transferase phosphoribosyltransferase, amino-acid biosynthesis; 1.9A {Mycobacterium tuberculosis} PDB: 1zvw_A*
Probab=33.09 E-value=19 Score=14.11 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=57.6
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEE---CCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEC
Q ss_conf 9999974498499977980289999999999849799998---9989998126887568531055033333220013431
Q gi|254780458|r 34 SIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKK---DREWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVV 110 (449)
Q Consensus 34 aLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~---~~~~~i~g~g~~~~~~~~~~i~~~~sgt~~r~l~~~l 110 (449)
|++.|.-.+|+ ..+++..+.++++.-+-++..+ +..+.+.|+|.++.+..+ ..-+..+++
T Consensus 64 AfL~alr~kge-------t~~Ei~g~~~am~~~~~~~~~~~~~~~~iD~~gtgg~~~~t~n----------iS~~~a~vl 126 (373)
T 2bpq_A 64 AFAVAMTMKAP-------TADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVN----------LSTMAAIVV 126 (373)
T ss_dssp HHHHHHHHSCC-------CHHHHHHHHHHHHHHSCCCCTTCSCTTCEEEEECCBTTBCCHH----------HHHHHHHHH
T ss_pred HHHHHHHHHCC-------CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCC----------HHHHHHHHH
T ss_conf 99999998797-------9999999999999848846776678877224688889878752----------178999998
Q ss_pred CCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 455310331233333446542101012312741010
Q gi|254780458|r 111 GVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKL 146 (449)
Q Consensus 111 ~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~ 146 (449)
+.++.++...|+..+..+ .-..+.|+.+|+++..
T Consensus 127 Aa~G~~V~kHG~r~~~~~--~Gs~D~Le~lg~~~~~ 160 (373)
T 2bpq_A 127 AAAGVPVVKHGNRAASSL--SGGADTLEALGVRIDL 160 (373)
T ss_dssp HHTTCCEEEEECCGGGSS--SCCHHHHHHTTCCCCC
T ss_pred HCCCCEEEEECCCCCCCC--CCHHHHHHHCCCCCCC
T ss_conf 717983777778999885--0755676640255469
No 23
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=31.68 E-value=15 Score=14.66 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCCCCCHH---HH-HHHHHHHHHHHHHH
Q ss_conf 232222347410027200---12-45689999999974
Q gi|254780458|r 332 LVISAFAEGETIIKGLAE---VM-TSKQFSGIIECFNI 365 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~---lk-esdRi~~~~~~L~~ 365 (449)
+.++.|..|...|.|... ++ -.+++..+..++++
T Consensus 150 ~t~lIF~SGkivItGaks~~~i~~a~~~i~~~l~~~~~ 187 (188)
T 2z8u_A 150 VVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQE 187 (188)
T ss_dssp EEEEECTTSEEEEESCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999779779997789999999999999999999753
No 24
>2ftx_B Hypothetical 24.6 kDa protein in ILV2-ADE17 intergenic region; alpha-beta, complex, coiled-coil, structural protein, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.300.1.2
Probab=31.37 E-value=20 Score=13.93 Aligned_cols=25 Identities=8% Similarity=0.288 Sum_probs=13.5
Q ss_pred HHHHHHHHHHCCCEEEEECCEEEEE
Q ss_conf 9999999998497999989989998
Q gi|254780458|r 56 VLNTMRMMHYLGARFTKKDREWIVQ 80 (449)
Q Consensus 56 v~~~l~al~~LG~~i~~~~~~~~i~ 80 (449)
+..-++..|+||+.++.+++...|.
T Consensus 9 ~lLkLklYRSLGv~ld~d~~k~iI~ 33 (64)
T 2ftx_B 9 NILKLKLYRSLGVILDLENDQVLIN 33 (64)
T ss_dssp HHHHHHHHHHTTEEEEGGGTEEEEC
T ss_pred CEEEEEEHHHCCEEEECCCCEEEEE
T ss_conf 0001000354567985478779999
No 25
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=29.43 E-value=21 Score=13.72 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=6.5
Q ss_pred HHHHHCCCEEEE
Q ss_conf 466544973444
Q gi|254780458|r 205 IILKEFGVDLLI 216 (449)
Q Consensus 205 ~~L~~fG~~i~~ 216 (449)
.+|++||+++..
T Consensus 122 ~~~~~~Gi~~~~ 133 (398)
T 2rfv_A 122 HSMPKFGINVRF 133 (398)
T ss_dssp THHHHTTCEEEE
T ss_pred HHCCCCCEEEEC
T ss_conf 541248647753
No 26
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi}
Probab=27.18 E-value=23 Score=13.47 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCCCCCHH
Q ss_conf 232222347410027200
Q gi|254780458|r 332 LVISAFAEGETIIKGLAE 349 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~ 349 (449)
+++..|..|...|.|...
T Consensus 180 vt~lIF~SGkIvITGaks 197 (218)
T 3eik_A 180 IVLLIFVSGKIVLTGAKV 197 (218)
T ss_dssp EEEEECTTSEEEEEEESS
T ss_pred EEEEEECCCEEEEECCCC
T ss_conf 899997897799975899
No 27
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=26.84 E-value=9 Score=16.13 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCEEEECCCCCCCCCC-CCCEEEEEEECCCCEEECCCCCCC
Q ss_conf 3103312333334465-421010123127410101343222
Q gi|254780458|r 114 DFQTFFKGRAEILQPT-IESLLAPLYQMGVQVKLPEDKRLP 153 (449)
Q Consensus 114 ~~~~~i~G~~~l~~Rp-i~~li~~L~~lGa~i~~~~~~~~P 153 (449)
++-+.|+|+.-+.+++ +.++++.+++.|..+....+|.++
T Consensus 4 ~ggVt~sGGEP~l~~~~l~ei~~~~k~~g~~~~l~TNG~l~ 44 (182)
T 3can_A 4 GGGVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLAR 44 (182)
T ss_dssp CCCEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCCC
T ss_pred CCCEEEEECCHHCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 99689983035098879999999998879919998177524
No 28
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=26.24 E-value=24 Score=13.36 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCCEEEEC-CCCHHHHHHHH-HHHHHCCCEEEEEC
Q ss_conf 9999999974498499977-98028999999-99998497999989
Q gi|254780458|r 31 SHFSIILGGIAAGETQIRG-VLESDDVLNTM-RMMHYLGARFTKKD 74 (449)
Q Consensus 31 s~RaLl~AaLa~g~s~i~n-~~~s~Dv~~~l-~al~~LG~~i~~~~ 74 (449)
+.-+.+++.+..|...|-. .++. .+..++ +.++.+|+++...+
T Consensus 25 Ai~~~l~~ll~~Gd~vv~~~~~Yg-~T~~l~~~~l~~~Gi~~~~~d 69 (331)
T 1pff_A 25 AIAASVWTFLKAGDHLISDDCLYG-CTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHCCTTCEEEEESCCCH-HHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHHHHHCCEEEEEEC
T ss_conf 999999997299999999289801-699999999876486899955
No 29
>2gci_A Probable alpha-methylacyl-COA racemase MCR; COA transferase, proton transfer, coenzyme A, isomerase; HET: MRR; 1.60A {Mycobacterium tuberculosis} SCOP: c.123.1.1 PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A*
Probab=25.98 E-value=25 Score=13.33 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=8.3
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 9999998497999
Q gi|254780458|r 59 TMRMMHYLGARFT 71 (449)
Q Consensus 59 ~l~al~~LG~~i~ 71 (449)
.-..|-.|||+|-
T Consensus 22 a~~~lad~GA~Vi 34 (360)
T 2gci_A 22 AAMILGDLGADVV 34 (360)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHHCCEEE
T ss_conf 9999998299799
No 30
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=23.13 E-value=25 Score=13.31 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCHH
Q ss_conf 232222347410027200
Q gi|254780458|r 332 LVISAFAEGETIIKGLAE 349 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~ 349 (449)
+++..|..|.-.|.|...
T Consensus 202 vt~lIF~SGkivITGaks 219 (240)
T 1rm1_A 202 IVLLIFVSGKIVLTGAKQ 219 (240)
T ss_dssp EEEEECTTSEEEEEEESS
T ss_pred EEEEEECCCEEEEECCCC
T ss_conf 899997897299976899
No 31
>2fv4_B Hypothetical 24.6 kDa protein in ILV2-ADE17 intergenic region; alpha-beta, complex, coiled-coil, structural protein, protein binding; NMR {Saccharomyces cerevisiae} SCOP: d.300.1.2
Probab=22.62 E-value=28 Score=12.93 Aligned_cols=24 Identities=8% Similarity=0.331 Sum_probs=10.1
Q ss_pred HHHHHHHHHCCCEEEEECCEEEEE
Q ss_conf 999999998497999989989998
Q gi|254780458|r 57 LNTMRMMHYLGARFTKKDREWIVQ 80 (449)
Q Consensus 57 ~~~l~al~~LG~~i~~~~~~~~i~ 80 (449)
..-++..|+||+.++.+++...|.
T Consensus 23 lLkLklYRSLGv~ld~e~~k~iI~ 46 (77)
T 2fv4_B 23 ILKLKLYRSLGVILDLENDQVLIN 46 (77)
T ss_dssp HHHHHHHHHTTEEEETTTTEEEEE
T ss_pred HHHHHHHHHCCEEEECCCCEEEEE
T ss_conf 221110555466874578769998
No 32
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=22.26 E-value=12 Score=15.41 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=50.5
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEECCC
Q ss_conf 99999974498499977980289999999999849799998998999812688756853105503333322001343145
Q gi|254780458|r 33 FSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGV 112 (449)
Q Consensus 33 RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~~~~~~i~~~~sgt~~r~l~~~l~~ 112 (449)
-|++.|--.+|.| .+++..+.++++..+.++.+. ..+.+.+.|.+....+. .-.+.++++.
T Consensus 39 ~AfL~alr~kget-------~~El~g~~~am~~~~~~~~~~-~~id~~~~gg~~~~~~~-----------~~~~~~~~aa 99 (345)
T 1o17_A 39 SAILVALRMKGES-------KNEIVGFARAMRELAIKIDVP-NAIDTAGTGGDGLGTVN-----------VSTASAILLS 99 (345)
T ss_dssp HHHHHHHHHHCCC-------HHHHHHHHHHHHHHSCCCCCT-TCEECCC----CCCBCC-----------HHHHHHHHHT
T ss_pred HHHHHHHHHHCCC-------HHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCH-----------HHHHHHHHHH
T ss_conf 9999999988929-------999999999999848878755-42576667998501340-----------0688899886
Q ss_pred CCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 5310331233333446542101012312741010
Q gi|254780458|r 113 YDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKL 146 (449)
Q Consensus 113 ~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~ 146 (449)
...++...|+..+..+ ..-.+.|+.+|+.+..
T Consensus 100 ~g~~V~khg~r~~~~~--~Gs~D~le~lgi~~~~ 131 (345)
T 1o17_A 100 LVNPVAKHGNRAVSGK--SGSADVLEALGYNIIV 131 (345)
T ss_dssp TTSCEEEEECCCSSSS--CSHHHHHHHHTBCCCC
T ss_pred HCCEEEEECCCCCCCC--CCHHHHHHHHCCCCCC
T ss_conf 2680676578765775--4679999870776567
No 33
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=21.80 E-value=11 Score=15.47 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=12.6
Q ss_pred CCCCCCCCEEEEEEECCCCEEEC
Q ss_conf 34465421010123127410101
Q gi|254780458|r 125 ILQPTIESLLAPLYQMGVQVKLP 147 (449)
Q Consensus 125 l~~Rpi~~li~~L~~lGa~i~~~ 147 (449)
|-+|.+.+.+++|..+|++++..
T Consensus 45 mPRRT~QD~I~AL~dlgI~~~Fv 67 (117)
T 3ke2_A 45 MPRRTLQDAIASFADIGIEVEFV 67 (117)
T ss_dssp CCHHHHHHHHHTGGGGTCEEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 96868999998610277599996
No 34
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=21.26 E-value=30 Score=12.75 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=4.6
Q ss_pred EEEECCCCEEE
Q ss_conf 12312741010
Q gi|254780458|r 136 PLYQMGVQVKL 146 (449)
Q Consensus 136 ~L~~lGa~i~~ 146 (449)
.|+++|+++.+
T Consensus 124 ~l~~~Gi~~~~ 134 (398)
T 1gc0_A 124 GIGEFGVKLRH 134 (398)
T ss_dssp TGGGGTCEEEE
T ss_pred CCCCCCEEEEC
T ss_conf 13358668634
No 35
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=20.36 E-value=32 Score=12.63 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=14.4
Q ss_pred HHHHHHHCCCEEEEECCEEEEECCC
Q ss_conf 9999974697899988959997678
Q gi|254780458|r 359 IIECFNINNIQYEREGDYLMIKGVP 383 (449)
Q Consensus 359 ~~~~L~~~G~~~~~~~d~l~I~G~~ 383 (449)
+...|+..|+++..+++.|.++++.
T Consensus 10 lL~~l~~~GI~L~~e~~kLr~~ap~ 34 (78)
T 2jug_A 10 LLAHAASLGVRLWVEGERLRFQAPP 34 (78)
T ss_dssp HHHHHHHHTCEEEEETTEEEEECCT
T ss_pred HHHHHHHCCCEEEEECCEEEEECCC
T ss_conf 9999998898899989999996787
Done!