Query gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 449
No_of_seqs 127 out of 4165
Neff 7.9
Searched_HMMs 13730
Date Wed Jun 1 06:09:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780458.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rf6a_ d.68.2.2 (A:) 5-enol-p 100.0 0 0 693.7 22.6 416 13-441 5-424 (427)
2 d1g6sa_ d.68.2.2 (A:) 5-enol-p 100.0 0 0 641.1 24.6 408 9-441 3-423 (427)
3 d1ejda_ d.68.2.2 (A:) UDP-N-ac 100.0 0 0 635.5 17.9 410 9-449 3-417 (419)
4 d1p88a_ d.68.2.2 (A:) 5-enol-p 100.0 3.2E-35 2.3E-39 241.2 9.1 207 31-242 1-216 (216)
5 d1ejda_ d.68.2.2 (A:) UDP-N-ac 99.6 4E-15 2.9E-19 112.7 13.4 312 102-448 25-348 (419)
6 d1rf6a_ d.68.2.2 (A:) 5-enol-p 99.6 5.1E-15 3.7E-19 112.1 11.8 44 31-74 94-140 (427)
7 d1g6sa_ d.68.2.2 (A:) 5-enol-p 99.6 3.8E-14 2.7E-18 106.5 12.8 316 102-448 25-362 (427)
8 d1p88a_ d.68.2.2 (A:) 5-enol-p 99.2 4.8E-11 3.5E-15 86.6 8.0 193 179-384 4-206 (216)
9 d1qmha2 d.68.2.1 (A:5-184,A:28 93.9 0.043 3.2E-06 29.4 4.8 19 198-216 127-149 (239)
10 d2ftxb1 d.300.1.2 (B:155-213) 34.9 10 0.00073 14.3 2.3 26 56-81 4-29 (59)
11 d1mp9a1 d.129.1.1 (A:5-96) TAT 33.7 10 0.00076 14.2 3.2 37 332-368 55-92 (92)
12 d1x9za_ d.292.1.1 (A:) DNA mis 27.6 13 0.00097 13.5 4.2 12 206-217 74-85 (182)
13 d1o17a2 c.27.1.1 (A:71-343) An 25.0 8.4 0.00061 14.8 0.4 29 116-146 33-61 (273)
14 d1pffa_ c.67.1.3 (A:) Methioni 24.6 15 0.0011 13.2 3.1 47 27-73 21-68 (331)
15 d1x74a1 c.123.1.1 (A:2-360) 2- 23.3 16 0.0012 13.0 2.2 13 59-71 21-33 (359)
16 d1aisa1 d.129.1.1 (A:1-92) TAT 21.6 17 0.0013 12.8 2.9 37 332-368 55-92 (92)
No 1
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=100.00 E-value=0 Score=693.70 Aligned_cols=416 Identities=31% Similarity=0.492 Sum_probs=381.1
Q ss_pred ECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 06885369998184222899999999744984999779802899999999998497999989989998126887568531
Q gi|254780458|r 13 SYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLLSPEY 92 (449)
Q Consensus 13 ~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~~~~~ 92 (449)
.++++|+|+|++|||||+|||+|++|+|++|+|+|+|+++|+||..|+++|++||++|++++++++|+|.|.+.+..|+.
T Consensus 5 ~~~~~l~G~i~~pgSKS~s~R~L~laaLa~g~s~i~n~~~s~Dv~~~~~~L~~lG~~i~~~~~~~~I~g~g~~~~~~~~~ 84 (427)
T d1rf6a_ 5 TNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQN 84 (427)
T ss_dssp CCCCCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEECCCSSCCCCCSS
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCHH
T ss_conf 68877179998378689999999999976998999379904999999999997889899759999999168877678615
Q ss_pred EEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECC-CCCCCCEEECCCCCCCEEEEECC
Q ss_conf 05503333322001343145531033123333344654210101231274101013-43222012022211111343023
Q gi|254780458|r 93 PLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPE-DKRLPLVLHGPRTPNPIVYKSPM 171 (449)
Q Consensus 93 ~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~-~~~~Pi~I~g~~~~~~~~~~~~~ 171 (449)
.+++++||+++||++++++..++.+.++|+++|++|||++|+++|++|||++++.+ ++.+|+.++|+...+++.+..+.
T Consensus 85 ~i~~~~sgt~~r~l~~l~a~~~~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g~~~~~~~~i~~~~ 164 (427)
T d1rf6a_ 85 ALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPI 164 (427)
T ss_dssp CEECTTCHHHHHHHHHHGGGCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEECCTTCCCCEEECSS
T ss_pred HHHHCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCEEEECCCCCCCCCEEEECCC
T ss_conf 56531443000012222245431120479813036555420006876394798303556202302477887445995357
Q ss_pred CCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 44433200000000001122234654544244446654497344411333100267528651023320023211221000
Q gi|254780458|r 172 DSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFP 251 (449)
Q Consensus 172 ~S~q~~s~lLlA~~~~~g~t~i~~~~~s~~~i~~~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ssAa~~ 251 (449)
+|||+++++|||++..+|.+++.+.....++++.+|++||+++.+.. ..+.|+|+++|.|.+|.||+|||+|+||
T Consensus 165 ~S~q~ts~lllaa~~~~g~~~i~~~~~~~~~t~~~L~~~G~~i~~~~-----~~i~i~~~~~l~~~~~~V~~D~s~A~~~ 239 (427)
T d1rf6a_ 165 ASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDG-----KKITVQGPQKLTGQKVVVPGDISSAAFW 239 (427)
T ss_dssp CCHHHHHHHHHHHTTSSEEEEEECSSCCCCHHHHHHHHTTCCCEEET-----TEEEEEECCCCBCCEEECCBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCC-----EEEEECCCCEECCCEEECCCCHHHHHHH
T ss_conf 76756443554222058943553243107789999997399752231-----2899886311167469858976789999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 00112255653222333232222222100000134323444227870343202564202333234644354301110111
Q gi|254780458|r 252 LAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPIL 331 (449)
Q Consensus 252 la~a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~~~~~~~~D~~p~L 331 (449)
+++|++++|++|+++|++.++.|.+++++|++||+++++.+.+.. .......+....|++++++..++|++||++|++
T Consensus 240 l~aaal~~g~~i~i~~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p~~~d~~p~l 317 (427)
T d1rf6a_ 240 LVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPV--AKSATLIVESSDLKGTEICGALIPRLIDELPII 317 (427)
T ss_dssp HHHHHHSTTEEEEEEEEECCTTTCHHHHHHHHTTCEEEEEEEETT--TTEEEEEEECCCCBCCEECTTSGGGTGGGHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 999996799879987789760016788764114530341133232--223402331266442223445588723455577
Q ss_pred CCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHH
Q ss_conf 2322223474100272001--24568999999997469789998895999767887666656872660488458999999
Q gi|254780458|r 332 LVISAFAEGETIIKGLAEV--MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFL 409 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~l--kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHRiaMa~~ 409 (449)
+++|++|+|+|+|+|++|+ |||||+.++.++|+|||+++++++|+++|+|++. .+++.|+||+|||+|||++
T Consensus 318 a~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~eL~klG~~~~~~~d~l~I~G~~~------l~g~~v~s~~DHRiama~~ 391 (427)
T d1rf6a_ 318 ALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSA------LHGARVNTFGDHRIGMMTA 391 (427)
T ss_dssp HHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECCC------CCCEEEECTTCHHHHHHHH
T ss_pred HHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCC------CCCCEEECCCCHHHHHHHH
T ss_conf 7765315784000207888889989999999999977997999899999979998------8478778988199999999
Q ss_pred HHHHH-CCCCEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 99973-599589944543027786988899865
Q gi|254780458|r 410 VMGLA-SEYSVVVDDYTMISTIFPDFINLMKTL 441 (449)
Q Consensus 410 i~gl~-~~~~~~I~~~~~v~ksyP~F~~~l~~L 441 (449)
++|+. ++++++|+|++||+||||+||++|++|
T Consensus 392 i~al~~~~g~~~I~~~~~v~ksyP~F~~~l~~L 424 (427)
T d1rf6a_ 392 IAALLVADGEVELDRAEAINTSYPSFFDDLESL 424 (427)
T ss_dssp HHHHTCSSSCEEEETGGGGGGTCTTHHHHHHHH
T ss_pred HHHHHCCCCCEEECCCCEEECCCHHHHHHHHHH
T ss_conf 999965899699827837978765099999997
No 2
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=641.10 Aligned_cols=408 Identities=21% Similarity=0.302 Sum_probs=357.7
Q ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCE--EEEEECCCCC
Q ss_conf 58970688536999818422289999999974498499977980289999999999849799998998--9998126887
Q gi|254780458|r 9 TIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDRE--WIVQGVGNGC 86 (449)
Q Consensus 9 ~~~~~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~--~~i~g~g~~~ 86 (449)
.|.+++.++|+|+|++|||||+|||+|++|+|++|+|+|+|+++++||..|+++|++||++|+++++. +.+.|.|...
T Consensus 3 ~l~i~p~~~l~G~i~~pgsKs~s~R~l~~aaLa~g~s~i~n~~~~~Dv~~~~~~L~~LG~~i~~~~~~~~i~i~g~g~~~ 82 (427)
T d1g6sa_ 3 SLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPL 82 (427)
T ss_dssp EEEECCCCEEEEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSCCEEEECCSSCC
T ss_pred CEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCC
T ss_conf 28976898057999827848999999999997599899925992399999999999869979993795099999579865
Q ss_pred CCCCCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECC-CCCCCCEEECCCCCCCE
Q ss_conf 56853105503333322001343145531033123333344654210101231274101013-43222012022211111
Q gi|254780458|r 87 LLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPE-DKRLPLVLHGPRTPNPI 165 (449)
Q Consensus 87 ~~~~~~~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~-~~~~Pi~I~g~~~~~~~ 165 (449)
...+...+++++||+++||++++++..++.+.++|+++|++|||++|+++|++|||+|++.+ ++++|+.+.|+..++++
T Consensus 83 ~~~~~~~i~~g~sgt~~r~l~~l~~~~~~~v~l~G~~sL~~Rp~~~~~~~L~~lGa~i~~~~~~~~~p~~i~g~~~~~~i 162 (427)
T d1g6sa_ 83 HAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNV 162 (427)
T ss_dssp CCCTTEEEECTTCHHHHHHHHHHTTSSEEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSSTTSSCEEEEECCCCEEE
T ss_pred CCCCCCEEECCCCCHHEEEEEEEECCCCEEEECCCCCHHCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCEEE
T ss_conf 66664100001220110232233113432784366401102014568889984498899740565415996688766039
Q ss_pred EEEECCCCCCCCCEEHHHHHCCCCCCCCC--CCCCCCCHHHHH---HHHCCCEEEEECCCCCEEEEEECCCCC-CCCCCC
Q ss_conf 34302344433200000000001122234--654544244446---654497344411333100267528651-023320
Q gi|254780458|r 166 VYKSPMDSVQSKSVVLLAGLNTPGITEVI--EPVKTQDHMEII---LKEFGVDLLIKSDTIEDYSVRIEGRKR-ISGCNL 239 (449)
Q Consensus 166 ~~~~~~~S~q~~s~lLlA~~~~~g~t~i~--~~~~s~~~i~~~---L~~fG~~i~~~~~~~~~~~i~i~g~~~-l~~~~~ 239 (449)
.++.+.+| |+++++|||++..++.+++. ++..|+||+++| |+.||+++...+. ..+.+.++++ +.|.+|
T Consensus 163 ~~~~~~Ss-q~~s~lllaA~~~~~~~~i~~~~~~~S~p~v~~t~~~l~~~G~~i~~~~~----~~~~~~~~~~~~~~~~~ 237 (427)
T d1g6sa_ 163 DVDGSVSS-QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHY----QQFVVKGGQSYQSPGTY 237 (427)
T ss_dssp EEEESSCT-HHHHHHHHHGGGSSSCEEEEEEEEECSTHHHHHHHHHHHHTTCCCEEETT----TEEEECSSCCCBCCSEE
T ss_pred EECCCCCC-HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHCHHHHCCCCCCCCCCCC----CCCCCCCCCCCCCCCEE
T ss_conf 98885570-78878999877626874899556555572132000111034543101234----42223586113588368
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 023211221000001122556532223332322222--221000001343234442278703432025642023332346
Q gi|254780458|r 240 KIPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLRV--GIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITIS 317 (449)
Q Consensus 240 ~Ip~D~ssAa~~la~a~l~~g~~i~i~n~~~~~~q~--~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~ 317 (449)
.||+|||+|+||+++|+++ +++++++|++.++.|. .|+++|++||+++++.++++. .....+++++++
T Consensus 238 ~v~~D~s~Aa~~~~aa~l~-~g~i~i~~~~~~~~~~d~~~~~~l~~~G~~i~~~~~~~~---------~~~~~l~~~~~d 307 (427)
T d1g6sa_ 238 LVEGDASSASYFLAAAAIK-GGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYIS---------CTRGELNAIDMD 307 (427)
T ss_dssp ECCBCHHHHHHHHHHHHHH-EEEEEEESCCTTCCCGGGGHHHHHHHHTCEEEECSSEEE---------EECCCCBCCEEE
T ss_pred ECCCHHHHHHHHHHHHHHH-CCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC---------CCCCCCCCEECC
T ss_conf 4451031356799988850-571430540013231014555555523550798404332---------221222202003
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCE
Q ss_conf 443543011101112322223474100272001--245689999999974697899988959997678876666568726
Q gi|254780458|r 318 DNRLRSIVDEYPILLVISAFAEGETIIKGLAEV--MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHM 395 (449)
Q Consensus 318 ~~~~~~~~D~~p~Lavla~~a~G~t~i~gi~~l--kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~ 395 (449)
+.++||++|+++++|++++|.|+++|++|+ |||||+.+++++|++||+++++++|+++|+|++. ..++.
T Consensus 308 ---~~~~pd~~p~l~~la~~a~g~s~~~g~~~lr~KEsdRi~~~~~~L~klG~~i~~~~d~l~I~G~~~------l~~~~ 378 (427)
T d1g6sa_ 308 ---MNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEK------LNFAE 378 (427)
T ss_dssp ---CTTSTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECCSS------CCCCE
T ss_pred ---CCCCCCCCHHHHHHHHHHCCCCCEECCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCEEEEECCCC------CCCCE
T ss_conf ---522687422699997654376311104434508843799999999977998999699899969987------85266
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHC
Q ss_conf 6048845899999999973599589944543027786988899865
Q gi|254780458|r 396 VQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPDFINLMKTL 441 (449)
Q Consensus 396 v~s~~DHRiaMa~~i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~L 441 (449)
|+||+|||++||+++|||.++ +++|+|++||+||||+||++|++|
T Consensus 379 v~s~~DHRiama~~iaal~~~-g~~I~~~~~i~ksyP~F~~~l~~l 423 (427)
T d1g6sa_ 379 IATYNDHRMAMCFSLVALSDT-PVTILDPKCTAKTFPDYFEQLARI 423 (427)
T ss_dssp ECCTTCHHHHHHHHGGGSSSS-CEEEESGGGGGGTCTTHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 768987899999999997589-869969870226397899999998
No 3
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]}
Probab=100.00 E-value=0 Score=635.53 Aligned_cols=410 Identities=19% Similarity=0.187 Sum_probs=340.5
Q ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCC
Q ss_conf 58970688536999818422289999999974498499977980289999999999849799998998999812688756
Q gi|254780458|r 9 TIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLL 88 (449)
Q Consensus 9 ~~~~~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~ 88 (449)
.+.++++++|+|+|++|||||+|||+|++|+|++|+|+|+|+++|+||..|++|||+||++|+++ +++.|.+.+.+.+.
T Consensus 3 ~~~i~g~~~L~G~V~ipgsKS~s~Rali~aaLa~g~s~I~n~l~s~D~~~~~~al~~LG~~I~~~-~~~~I~~~~~~~~~ 81 (419)
T d1ejda_ 3 KFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERD-GSVWIDASNVNNFS 81 (419)
T ss_dssp EEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEES-SSEEEECTTCCCCE
T ss_pred EEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEC-CEEEEECCCCCCCC
T ss_conf 69994889047799788838999999999998499899925990199999999999779989989-87999899977776
Q ss_pred CCCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCCCEEEE
Q ss_conf 85310550333332200134314553103312333334465421010123127410101343222012022211111343
Q gi|254780458|r 89 SPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYK 168 (449)
Q Consensus 89 ~~~~~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~~~~~~~ 168 (449)
.+. .+..+++++++++++.+++...+.+.++|+++|++|||++++++|++||+++++. ++.+|+.+.|+...+ .+.
T Consensus 82 ~~~-~~~~~~~~t~~~~~~~~a~~~~~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~-~g~~~~~i~g~l~g~--~~~ 157 (419)
T d1ejda_ 82 APY-DLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLE-EGYVKASVNGRLKGA--HIV 157 (419)
T ss_dssp ECH-HHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEE-TTEEEEECSSSCBCC--EEE
T ss_pred CCH-HHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEC-CCCEEEECCCCCCCC--EEE
T ss_conf 655-4540354320024425665277524666643457774267889998536169962-892445337886674--674
Q ss_pred ECCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHH---HHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 0234443320000000000112223465454424444---6654497344411333100267528651023320023211
Q gi|254780458|r 169 SPMDSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEI---ILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDS 245 (449)
Q Consensus 169 ~~~~S~q~~s~lLlA~~~~~g~t~i~~~~~s~~~i~~---~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ 245 (449)
.+.+|+|++|++|||++++++.+.+. +..++||+++ +|++||+++...++ ..+.++|.+.+.+.+|.||+||
T Consensus 158 ~~~~Ssq~~s~llla~~~~~g~~~i~-~~~~~~~i~~t~~~l~~~G~~i~~~~~----~~~~i~g~~~~~~~~~~V~~D~ 232 (419)
T d1ejda_ 158 MDKVSVGATVTIMSAATLAEGTTIIE-NAAREPEIVDTANFLVALGAKISGQGT----DRITIEGVERLGGGVYRVLPDR 232 (419)
T ss_dssp CSSCCHHHHHHHHHHHTTSBSEEEEE-TCCCCHHHHHHHHHHHHTTCEEECTTS----SEEEEECCSCBCCEEEECCBCH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCHHHHHHHHHHHCCEEEECCCC----EEEEECCCCCCCCCCEEECCHH
T ss_conf 58762567788984455237963542-024441566677776522010011795----4999805423467740535706
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCH
Q ss_conf 22100000112255653222333232222222100000134323444227870343202564202333234644354301
Q gi|254780458|r 246 SIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIV 325 (449)
Q Consensus 246 ssAa~~la~a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~~~~~~~~ 325 (449)
|+|+||+++|++ +|+++++.|+..+++| .++++|++||++|++.++++. +......+++++ +...|
T Consensus 233 ssAa~~~~aa~i-~g~~i~i~~~~~~~~~-~~~~~l~~mg~~i~~~~~~~~-------i~~~~~~~~~i~-----~~~~~ 298 (419)
T d1ejda_ 233 IETGTFLVAAAI-SGGKIVCRNAQPDTLD-AVLAKLREAGADIETGEDWIS-------LDMHGKRPKAVT-----VRTAP 298 (419)
T ss_dssp HHHHHHHHHHHT-TTCEEEEESCCGGGCH-HHHHHHHHTTCEEEECSSEEE-------EECTTCCCBCCC-----EECCS
T ss_pred HHHHHHHHHHCC-CCCEEECCCCCHHHHH-HHHHHHHHHCCEEEECCCEEE-------EEECCCCCCCCC-----CCCCC
T ss_conf 643113332215-6865521677806778-898876642313997377699-------997676544300-----25663
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHH
Q ss_conf 110111232222347410027200--124568999999997469789998895999767887666656872660488458
Q gi|254780458|r 326 DEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYR 403 (449)
Q Consensus 326 D~~p~Lavla~~a~G~t~i~gi~~--lkesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHR 403 (449)
|..|+++++++++.+.++++|+.+ .||+||+.+++++|++||+++++++|+++|+|++.+ .++.+++ +|||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~G~~~~~~ke~dr~~~~~~eL~klG~~v~~~~d~l~I~G~~~l------~g~~v~~-~DHR 371 (419)
T d1ejda_ 299 HPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKL------SGAQVMA-TDLR 371 (419)
T ss_dssp TTSCCGGGHHHHHHHHHTSBSEEEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCSCC------BCCEECC-SSHH
T ss_pred CCCCCCCHHHHHHCCCEEECCCEEEEEECCCHHHHHHHHHHHCCCEEEEECCEEEEECCCCC------CCCEECC-CCHH
T ss_conf 22344211455412221873616776402343878999999688979996999999799986------3761613-8389
Q ss_pred HHHHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHCCCEEEEEC
Q ss_conf 9999999997359958994454302778698889986597898859
Q gi|254780458|r 404 VAMSFLVMGLASEYSVVVDDYTMISTIFPDFINLMKTLGARIEWVD 449 (449)
Q Consensus 404 iaMa~~i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~LGa~ie~~~ 449 (449)
|||||++|||.++++++|+|++||+||||+||++|++|||+|||+|
T Consensus 372 iAMa~aia~l~~~g~~~I~~~~~i~~SyP~F~~~l~~LGa~I~~~~ 417 (419)
T d1ejda_ 372 ASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVK 417 (419)
T ss_dssp HHHHHHHHHHHSBEEEEECCTHHHHHHSSSHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEECCCEEEECCCHHHHHHHHHCCCEEEEEC
T ss_conf 9999999998199949983613786873409999996798999971
No 4
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.2e-35 Score=241.18 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=166.4
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEE--CCCCCCCCCCCEEEECCCCCCCCEEEE
Q ss_conf 999999997449849997798028999999999984979999899899981--268875685310550333332200134
Q gi|254780458|r 31 SHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQG--VGNGCLLSPEYPLDFKGFDMGYGLMMG 108 (449)
Q Consensus 31 s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g--~g~~~~~~~~~~i~~~~sgt~~r~l~~ 108 (449)
|||||++|||++|+|+|+|++.++||..|+++|++||++|+++++...+.. .+......+....+.+.+++.+++++.
T Consensus 1 S~Rali~AaLa~g~t~I~n~~~~~Dv~~~i~~L~~lG~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (216)
T d1p88a_ 1 SNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAA 80 (216)
T ss_dssp CTHHHHHHHSEESEEEEESCCCSHHHHHHHHHHHHHTCEEEECSSSCCEEEECCSSSCCCSSCEEEECSSCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEC
T ss_conf 97999999976998899689975899999999998499799837630357502333443223201012332201110110
Q ss_pred ECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECC-CCCCCCEEECCCCCCCEEEEECCCCCCCCCEEHHHHHCC
Q ss_conf 3145531033123333344654210101231274101013-432220120222111113430234443320000000000
Q gi|254780458|r 109 VVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPE-DKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNT 187 (449)
Q Consensus 109 ~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~-~~~~Pi~I~g~~~~~~~~~~~~~~S~q~~s~lLlA~~~~ 187 (449)
.++.....+.+.|+++++.||+++++++|+++|++++..+ ++.+|+.+.|+..++.+.++...+| |+.+++|||++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~G~~i~~~~~~~~~p~~~~g~~~~~~i~i~~~~Ss-q~~s~lllaa~~~ 159 (216)
T d1p88a_ 81 ALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS-QFLTALLMTAPLA 159 (216)
T ss_dssp HTTSSCCCEEEECCGGGGGSCCHHHHHHHHHTTCCEECSSSTTSSCCEECCCCCCCCEEEESSSCH-HHHHHHHHHSTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCH-HHHHHHHHHHHHC
T ss_conf 112456324430353323321013344454168589963675313577558876852998478871-8886899999755
Q ss_pred CCCCCC--CCCCCCCCHHHHH---HHHCCCEEEEECCCCCEEEEEECCCCCCC-CCCCCCC
Q ss_conf 112223--4654544244446---65449734441133310026752865102-3320023
Q gi|254780458|r 188 PGITEV--IEPVKTQDHMEII---LKEFGVDLLIKSDTIEDYSVRIEGRKRIS-GCNLKIP 242 (449)
Q Consensus 188 ~g~t~i--~~~~~s~~~i~~~---L~~fG~~i~~~~~~~~~~~i~i~g~~~l~-~~~~~Ip 242 (449)
++.+++ .++..|+||+++| |++||++|+.++. +.|+|+|+|+|. |.||.||
T Consensus 160 ~~~t~I~~~~~~~s~~~v~~t~~~L~~~Ga~I~~~~~----~~i~I~G~~~~~~p~dy~vE 216 (216)
T d1p88a_ 160 PEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHY----QQFVVKGGQSYQSPGTYLVE 216 (216)
T ss_dssp SSCEEEEEESSCSCHHHHHHHHHHHHTTTCCEEECSS----SCEEECSSCCEECCSEEECC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCC----CEEEECCCCCCCCCCEEEEC
T ss_conf 8964899535457876399999999988996996689----88999099744579328969
No 5
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]}
Probab=99.63 E-value=4e-15 Score=112.72 Aligned_cols=312 Identities=14% Similarity=0.149 Sum_probs=127.9
Q ss_pred CCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCCCE-EEEECCCCCCCCCEE
Q ss_conf 2200134314553103312333334465421010123127410101343222012022211111-343023444332000
Q gi|254780458|r 102 GYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPI-VYKSPMDSVQSKSVV 180 (449)
Q Consensus 102 ~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~~~~-~~~~~~~S~q~~s~l 180 (449)
+.|.++ +++++++++.+.+- +..+...-.+++|++||++|+.. +. +.|.++...+.. .........-....+
T Consensus 25 s~Rali-~aaLa~g~s~I~n~--l~s~D~~~~~~al~~LG~~I~~~--~~--~~I~~~~~~~~~~~~~~~~~~~~t~~~~ 97 (419)
T d1ejda_ 25 ALPILF-AALLAEEPVEIQNV--PKLKDIDTTMKLLTQLGTKVERD--GS--VWIDASNVNNFSAPYDLVKTMRASIWAL 97 (419)
T ss_dssp HHHHHH-HGGGBSSCEEEESC--CCCHHHHHHHHHHHHTTCEEEES--SS--EEEECTTCCCCEECHHHHTTCGGGGGGH
T ss_pred HHHHHH-HHHHCCCCEEECCC--CCCHHHHHHHHHHHHCCCEEEEC--CE--EEEECCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 999999-99984998999259--90199999999999779989989--87--9998999777766554540354320024
Q ss_pred -HHHHHCCCCCCCCCC--CCCCCCHHHH--HHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHH-HHCCCC
Q ss_conf -000000011222346--5454424444--6654497344411333100267528651023320023211221-000001
Q gi|254780458|r 181 -LLAGLNTPGITEVIE--PVKTQDHMEI--ILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIA-FFPLAA 254 (449)
Q Consensus 181 -LlA~~~~~g~t~i~~--~~~s~~~i~~--~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ssA-a~~la~ 254 (449)
++++...++.+++.+ ....||+-.. .|++||+++..... ...+.+++ .+++.++..+.-.+.. +.++.+
T Consensus 98 ~~~~a~~~~~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~g---~~~~~i~g--~l~g~~~~~~~~Ssq~~s~llla 172 (419)
T d1ejda_ 98 GPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEG---YVKASVNG--RLKGAHIVMDKVSVGATVTIMSA 172 (419)
T ss_dssp HHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETT---EEEEECSS--SCBCCEEECSSCCHHHHHHHHHH
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCC---CEEEECCC--CCCCCEEECCCCCHHHHHHHHHH
T ss_conf 42566527752466664345777426788999853616996289---24453378--86674674587625677889844
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEE-EECCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 12255653222333232222222100000134323444227870343202564-20233323464435430111011123
Q gi|254780458|r 255 ALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVR-FSKIKGITISDNRLRSIVDEYPILLV 333 (449)
Q Consensus 255 a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~-~~~l~g~~i~~~~~~~~~D~~p~Lav 333 (449)
+.+..| ..++.+....+-....+++|++||++|+..+.... .+. ...+++.++.. -+|..-... +++
T Consensus 173 ~~~~~g-~~~i~~~~~~~~i~~t~~~l~~~G~~i~~~~~~~~--------~i~g~~~~~~~~~~V--~~D~ssAa~-~~~ 240 (419)
T d1ejda_ 173 ATLAEG-TTIIENAAREPEIVDTANFLVALGAKISGQGTDRI--------TIEGVERLGGGVYRV--LPDRIETGT-FLV 240 (419)
T ss_dssp HTTSBS-EEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEE--------EEECCSCBCCEEEEC--CBCHHHHHH-HHH
T ss_pred HHHCCC-CEEEECCCCCCHHHHHHHHHHHCCEEEECCCCEEE--------EECCCCCCCCCCEEE--CCHHHHHHH-HHH
T ss_conf 552379-63542024441566677776522010011795499--------980542346774053--570664311-333
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCH----HHHHHHH
Q ss_conf 222234741002720012456899999999746978999889599976788766665687266048845----8999999
Q gi|254780458|r 334 ISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGY----RVAMSFL 409 (449)
Q Consensus 334 la~~a~G~t~i~gi~~lkesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DH----RiaMa~~ 409 (449)
+|+...++.++.|+. .+.++.+.+.|.+||++++...+.+.|..... ...+..++...|- =...+++
T Consensus 241 aa~i~g~~i~i~~~~----~~~~~~~~~~l~~mg~~i~~~~~~~~i~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~ 311 (419)
T d1ejda_ 241 AAAISGGKIVCRNAQ----PDTLDAVLAKLREAGADIETGEDWISLDMHGK-----RPKAVTVRTAPHPAFPTDMQAQFT 311 (419)
T ss_dssp HHHTTTCEEEEESCC----GGGCHHHHHHHHHTTCEEEECSSEEEEECTTC-----CCBCCCEECCSTTSCCGGGHHHHH
T ss_pred HHCCCCCEEECCCCC----HHHHHHHHHHHHHHCCEEEECCCEEEEEECCC-----CCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 221568655216778----06778898876642313997377699997676-----544300256632234421145541
Q ss_pred HHHHHCCCCEEEECCCEECCCCCCHHHHHHHCCCEEEEE
Q ss_conf 999735995899445430277869888998659789885
Q gi|254780458|r 410 VMGLASEYSVVVDDYTMISTIFPDFINLMKTLGARIEWV 448 (449)
Q Consensus 410 i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~LGa~ie~~ 448 (449)
.++..+.|...+++.++=+ --.+.+.|+++|+++++-
T Consensus 312 ~~~~~~~G~~~~~~ke~dr--~~~~~~eL~klG~~v~~~ 348 (419)
T d1ejda_ 312 LLNLVAEGTGVITETIFEN--RFMHVPELIRMGAHAEIE 348 (419)
T ss_dssp HHHHTSBSEEEEECCSCSS--CCTHHHHHHHTTCEEEEE
T ss_pred CCCEEECCCEEEEEECCCH--HHHHHHHHHHCCCEEEEE
T ss_conf 2221873616776402343--878999999688979996
No 6
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.60 E-value=5.1e-15 Score=112.06 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=21.3
Q ss_pred HHHHHH-HHHHCCCCEEEECC--CCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 999999-99744984999779--802899999999998497999989
Q gi|254780458|r 31 SHFSII-LGGIAAGETQIRGV--LESDDVLNTMRMMHYLGARFTKKD 74 (449)
Q Consensus 31 s~RaLl-~AaLa~g~s~i~n~--~~s~Dv~~~l~al~~LG~~i~~~~ 74 (449)
+.|.++ +++..++.+.+.+- +..+.+...+++|++||++|+.++
T Consensus 94 ~~r~l~~l~a~~~~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~ 140 (427)
T d1rf6a_ 94 SIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQT 140 (427)
T ss_dssp HHHHHHHHGGGCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEET
T ss_pred EECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCEEEECC
T ss_conf 00012222245431120479813036555420006876394798303
No 7
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=99.56 E-value=3.8e-14 Score=106.51 Aligned_cols=316 Identities=14% Similarity=0.143 Sum_probs=178.6
Q ss_pred CCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCC----CCEEEEECCCCCCCC
Q ss_conf 2200134314553103312333334465421010123127410101343222012022211----111343023444332
Q gi|254780458|r 102 GYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTP----NPIVYKSPMDSVQSK 177 (449)
Q Consensus 102 ~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~----~~~~~~~~~~S~q~~ 177 (449)
+.|.++ ++++.++.+++.+- +..+.+.-.+++|++||++++..++. ..+.+.|.... ....+..+.+. +
T Consensus 25 s~R~l~-~aaLa~g~s~i~n~--~~~~Dv~~~~~~L~~LG~~i~~~~~~-~~i~i~g~g~~~~~~~~~~i~~g~sg---t 97 (427)
T d1g6sa_ 25 SNRALL-LAALAHGKTVLTNL--LDSDDVRHMLNALTALGVSYTLSADR-TRCEIIGNGGPLHAEGALELFLGNAG---T 97 (427)
T ss_dssp HHHHHH-HHHHSBSEEEEESC--CCSHHHHHHHHHHHHTTCEEEECTTS-CCEEEECCSSCCCCCTTEEEECTTCH---H
T ss_pred HHHHHH-HHHHCCCCEEECCC--CCCHHHHHHHHHHHHCCCEEEEECCC-EEEEEEECCCCCCCCCCCEEECCCCC---H
T ss_conf 999999-99975998999259--92399999999999869979993795-09999957986566664100001220---1
Q ss_pred CEEHHHHHC--CCCCCCCCC--CCCCCCHHHH--HHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHH--H
Q ss_conf 000000000--011222346--5454424444--6654497344411333100267528651023320023211221--0
Q gi|254780458|r 178 SVVLLAGLN--TPGITEVIE--PVKTQDHMEI--ILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIA--F 249 (449)
Q Consensus 178 s~lLlA~~~--~~g~t~i~~--~~~s~~~i~~--~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ssA--a 249 (449)
+..++.++. .+..+.+.+ ....||.-.. .|+++|+++....+. ...-+.+.|+ +.+.++.++++.|+. +
T Consensus 98 ~~r~l~~l~~~~~~~v~l~G~~sL~~Rp~~~~~~~L~~lGa~i~~~~~~-~~~p~~i~g~--~~~~~i~~~~~~Ssq~~s 174 (427)
T d1g6sa_ 98 AMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQE-NYPPLRLQGG--FTGGNVDVDGSVSSQFLT 174 (427)
T ss_dssp HHHHHHHHTTSSEEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSST-TSSCEEEEEC--CCCEEEEEEESSCTHHHH
T ss_pred HEEEEEEEECCCCEEEECCCCCHHCCCHHHHHHHHHHHCCCEEEEEECC-CCEEEEECCC--CCCEEEEECCCCCCHHHH
T ss_conf 1023223311343278436640110201456888998449889974056-5415996688--766039988855707887
Q ss_pred HCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEE-EC-CCCCCCCCCCCCCC
Q ss_conf 00001122556532223---332322222221000001343234442278703432025642-02-33323464435430
Q gi|254780458|r 250 FPLAAALLIPGSDIKLL---NVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRF-SK-IKGITISDNRLRSI 324 (449)
Q Consensus 250 ~~la~a~l~~g~~i~i~---n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~-~~-l~g~~i~~~~~~~~ 324 (449)
-++.+|.+.++ ..+++ +....+--...+++|++||+++........ .+.+ .. +.+.++. .++=
T Consensus 175 ~lllaA~~~~~-~~~i~~~~~~~S~p~v~~t~~~l~~~G~~i~~~~~~~~--------~~~~~~~~~~~~~~~---v~~D 242 (427)
T d1g6sa_ 175 ALLMTAPLAPE-DTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQF--------VVKGGQSYQSPGTYL---VEGD 242 (427)
T ss_dssp HHHHHGGGSSS-CEEEEEEEEECSTHHHHHHHHHHHHTTCCCEEETTTEE--------EECSSCCCBCCSEEE---CCBC
T ss_pred HHHHHHHHCCC-CCEEEECCCCCCCCHHHHCHHHHCCCCCCCCCCCCCCC--------CCCCCCCCCCCCEEE---CCCH
T ss_conf 89998776268-74899556555572132000111034543101234422--------235861135883684---4510
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHH
Q ss_conf 11101112322223474100272001-24568999999997469789998895999767887666656872660488458
Q gi|254780458|r 325 VDEYPILLVISAFAEGETIIKGLAEV-MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYR 403 (449)
Q Consensus 325 ~D~~p~Lavla~~a~G~t~i~gi~~l-kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHR 403 (449)
.-..-+++++|+...|..++.|+... ...|+ .+.+.|++||++++..++.+.+.+. ..++.. ..++.+.|
T Consensus 243 ~s~Aa~~~~aa~l~~g~i~i~~~~~~~~~~d~--~~~~~l~~~G~~i~~~~~~~~~~~~-~l~~~~----~d~~~~pd-- 313 (427)
T d1g6sa_ 243 ASSASYFLAAAAIKGGTVKVTGIGRNSMQGDI--RFADVLEKMGATICWGDDYISCTRG-ELNAID----MDMNHIPD-- 313 (427)
T ss_dssp HHHHHHHHHHHHHHEEEEEEESCCTTCCCGGG--GHHHHHHHHTCEEEECSSEEEEECC-CCBCCE----EECTTSTT--
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCCCHH--HHHHHHHHCCCCEEEECCCCCCCCC-CCCCEE----CCCCCCCC--
T ss_conf 31356799988850571430540013231014--5555555235507984043322212-222020----03522687--
Q ss_pred HHHHHHHHHHHCCCCEEEECCCEECCC-CC---CHHHHHHHCCCEEEEE
Q ss_conf 999999999735995899445430277-86---9888998659789885
Q gi|254780458|r 404 VAMSFLVMGLASEYSVVVDDYTMISTI-FP---DFINLMKTLGARIEWV 448 (449)
Q Consensus 404 iaMa~~i~gl~~~~~~~I~~~~~v~ks-yP---~F~~~l~~LGa~ie~~ 448 (449)
.++.++++++.+.+.++++|.+...-- +. .+.+.|+++|++++.-
T Consensus 314 ~~p~l~~la~~a~g~s~~~g~~~lr~KEsdRi~~~~~~L~klG~~i~~~ 362 (427)
T d1g6sa_ 314 AAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEG 362 (427)
T ss_dssp THHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEC
T ss_pred CCHHHHHHHHHHCCCCCEECCCCCCEEEEHHHHHHHHHHHHCCCEEEEE
T ss_conf 4226999976543763111044345088437999999999779989996
No 8
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=99.16 E-value=4.8e-11 Score=86.63 Aligned_cols=193 Identities=20% Similarity=0.232 Sum_probs=102.8
Q ss_pred EEHHHHHCCCCCCCCCCCCCCCCHHHH--HHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC-HHHH--HHCCC
Q ss_conf 000000000112223465454424444--665449734441133310026752865102332002321-1221--00000
Q gi|254780458|r 179 VVLLAGLNTPGITEVIEPVKTQDHMEI--ILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGD-SSIA--FFPLA 253 (449)
Q Consensus 179 ~lLlA~~~~~g~t~i~~~~~s~~~i~~--~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D-~ssA--a~~la 253 (449)
+||+|+ +++|++++.+...+.|-..+ .|++||++|....+.. .+.+.+...........+.+ -+++ .++++
T Consensus 4 ali~Aa-La~g~t~I~n~~~~~Dv~~~i~~L~~lG~~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (216)
T d1p88a_ 4 ALLLAA-LAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRT---RCEIIGNGGPLHAEGALELFLGNAGTAMRPLA 79 (216)
T ss_dssp HHHHHH-SEESEEEEESCCCSHHHHHHHHHHHHHTCEEEECSSSC---CEEEECCSSSCCCSSCEEEECSSCHHHHHHHH
T ss_pred HHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCC---EEEEECCCCCCCCCCCEEECCCCCCCCCCCEE
T ss_conf 999999-76998899689975899999999998499799837630---35750233344322320101233220111011
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCC--CCCCCCCCCCHHHCC
Q ss_conf 112255653222333232222--2221000001343234442278703432025642023332--346443543011101
Q gi|254780458|r 254 AALLIPGSDIKLLNVLTNPLR--VGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGI--TISDNRLRSIVDEYP 329 (449)
Q Consensus 254 ~a~l~~g~~i~i~n~~~~~~q--~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~--~i~~~~~~~~~D~~p 329 (449)
+.+......+.+.+-.....+ ...++.|++||++++...+.. ...+.+. +++.+. +++ .+..+...-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~G~~i~~~~~~~-----~~p~~~~-g~~~~~~i~i~---~~~Ssq~~s 150 (216)
T d1p88a_ 80 AALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQEN-----YPPLRLQ-GGFTGGNVDVD---GSVSSQFLT 150 (216)
T ss_dssp HHTTSSCCCEEEECCGGGGGSCCHHHHHHHHHTTCCEECSSSTT-----SSCCEEC-CCCCCCCEEEE---SSSCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCC-----EEEEEEC-CCCCCCEEEEC---CCCCHHHHH
T ss_conf 01124563244303533233210133444541685899636753-----1357755-88768529984---788718886
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC-CEEEEECCCC
Q ss_conf 112322223474100272001245689999999974697899988-9599976788
Q gi|254780458|r 330 ILLVISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREG-DYLMIKGVPG 384 (449)
Q Consensus 330 ~Lavla~~a~G~t~i~gi~~lkesdRi~~~~~~L~~~G~~~~~~~-d~l~I~G~~~ 384 (449)
.|..+|++++|.++|+....+.....++.+.+.|++||++++.++ +.+.|.|.+.
T Consensus 151 ~lllaa~~~~~~t~I~~~~~~~s~~~v~~t~~~L~~~Ga~I~~~~~~~i~I~G~~~ 206 (216)
T d1p88a_ 151 ALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQS 206 (216)
T ss_dssp HHHHHSTTSSSCEEEEEESSCSCHHHHHHHHHHHHTTTCCEEECSSSCEEECSSCC
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEECCCCC
T ss_conf 89999975589648995354578763999999999889969966898899909974
No 9
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]}
Probab=93.86 E-value=0.043 Score=29.40 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=10.1
Q ss_pred CCCCHHHH----HHHHCCCEEEE
Q ss_conf 54424444----66544973444
Q gi|254780458|r 198 KTQDHMEI----ILKEFGVDLLI 216 (449)
Q Consensus 198 ~s~~~i~~----~L~~fG~~i~~ 216 (449)
.|.||++. +|++||++.++
T Consensus 127 psvd~~~~v~lp~l~~~G~~~~~ 149 (239)
T d1qmha2 127 PPADFIRRVLEPLLAKIGIHQQT 149 (239)
T ss_dssp CCTHHHHHTHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 88889999999999976997389
No 10
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.88 E-value=10 Score=14.29 Aligned_cols=26 Identities=8% Similarity=0.264 Sum_probs=15.5
Q ss_pred HHHHHHHHHHCCCEEEEECCEEEEEE
Q ss_conf 99999999984979999899899981
Q gi|254780458|r 56 VLNTMRMMHYLGARFTKKDREWIVQG 81 (449)
Q Consensus 56 v~~~l~al~~LG~~i~~~~~~~~i~g 81 (449)
+..-++..|+||+.++.+++...|.-
T Consensus 4 ~iLkLklYRSLGv~id~e~~k~iI~n 29 (59)
T d2ftxb1 4 NILKLKLYRSLGVILDLENDQVLINR 29 (59)
T ss_dssp HHHHHHHHHHTTEEEEGGGTEEEECS
T ss_pred CEEEEEEHHHCCEEEECCCCEEEEEE
T ss_conf 23442222434679855687699980
No 11
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=33.70 E-value=10 Score=14.17 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHCCC
Q ss_conf 232222347410027200124568-9999999974697
Q gi|254780458|r 332 LVISAFAEGETIIKGLAEVMTSKQ-FSGIIECFNINNI 368 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~lkesdR-i~~~~~~L~~~G~ 368 (449)
+.+..|..|.-.+.|.....+..+ ++.+...|+++|+
T Consensus 55 ~t~lIF~SGkivitGaks~~~~~~a~~~~~~~L~~~G~ 92 (92)
T d1mp9a1 55 ITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGM 92 (92)
T ss_dssp EEEEECTTSEEEEECCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 79999858879998259999999999999999998189
No 12
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=27.59 E-value=13 Score=13.51 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=7.9
Q ss_pred HHHHCCCEEEEE
Q ss_conf 665449734441
Q gi|254780458|r 206 ILKEFGVDLLIK 217 (449)
Q Consensus 206 ~L~~fG~~i~~~ 217 (449)
.|+++|.+++..
T Consensus 74 ~L~~~Gf~~e~~ 85 (182)
T d1x9za_ 74 ALAELGIDFQSD 85 (182)
T ss_dssp HHHHTTCEEEEC
T ss_pred HHHHCCCEEECC
T ss_conf 999769888704
No 13
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=25.03 E-value=8.4 Score=14.79 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=19.0
Q ss_pred EEEECCCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 0331233333446542101012312741010
Q gi|254780458|r 116 QTFFKGRAEILQPTIESLLAPLYQMGVQVKL 146 (449)
Q Consensus 116 ~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~ 146 (449)
++.-.|+.++..+ ---.|.|+.||++++.
T Consensus 33 ~VaKHGnr~~ssk--~GSaDvLe~LGi~~~~ 61 (273)
T d1o17a2 33 PVAKHGNRAVSGK--SGSADVLEALGYNIIV 61 (273)
T ss_dssp CEEEEECCCSSSS--CSHHHHHHHHTBCCCC
T ss_pred CEEEECCCCCCCC--CCHHHHHHHCCCCCCC
T ss_conf 6787789988887--6789999873998778
No 14
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}
Probab=24.56 E-value=15 Score=13.16 Aligned_cols=47 Identities=11% Similarity=-0.036 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 22289999999974498499977-980289999999999849799998
Q gi|254780458|r 27 DRSLSHFSIILGGIAAGETQIRG-VLESDDVLNTMRMMHYLGARFTKK 73 (449)
Q Consensus 27 SKs~s~RaLl~AaLa~g~s~i~n-~~~s~Dv~~~l~al~~LG~~i~~~ 73 (449)
|=-.++-+.+++.+..|...|.. ..+..=....-+.++.+|+++..-
T Consensus 21 SGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~ 68 (331)
T d1pffa_ 21 SGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFI 68 (331)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf 789999999999729999999928975179999999998659589996
No 15
>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.30 E-value=16 Score=13.01 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=7.7
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 9999998497999
Q gi|254780458|r 59 TMRMMHYLGARFT 71 (449)
Q Consensus 59 ~l~al~~LG~~i~ 71 (449)
.-..|-.|||+|-
T Consensus 21 ~~~~lad~GA~Vi 33 (359)
T d1x74a1 21 AAMILGDLGADVV 33 (359)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHHCCEEE
T ss_conf 9999998399799
No 16
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=21.61 E-value=17 Score=12.80 Aligned_cols=37 Identities=11% Similarity=0.309 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHCCC
Q ss_conf 232222347410027200124568-9999999974697
Q gi|254780458|r 332 LVISAFAEGETIIKGLAEVMTSKQ-FSGIIECFNINNI 368 (449)
Q Consensus 332 avla~~a~G~t~i~gi~~lkesdR-i~~~~~~L~~~G~ 368 (449)
+.+..|..|.-.+.|.....|..+ ++.+...|+++|+
T Consensus 55 ~~~lIF~sGkivitGakS~~~~~~a~~~i~~~l~~lGv 92 (92)
T d1aisa1 55 VALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGV 92 (92)
T ss_dssp CEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999789889998269999999999999999998389
Done!